MELO3C031944.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031944.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMagnesium transporter NIPA
Locationchr06 : 11569765 .. 11570808 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATCTCATCACTTTCTCCCCTCTCTTCTCTGATCAGTCGCCAACGCACGTGAACTCGCCGCCGTGCTATCATCGTAGGCAGCTTCTTCCGTTGCCGCATCGTGCTCGTGCCTCACGTGGAACACTCACCCTCCTCACCACCGACACGTTACCGGCTCGGGATGTCCGTTGTTGAGCGATTTCGGTTGCAATATCCTGGCACCGGAGGCTCATCTAGCAAGTCAGTTTTTAGCGAAATGGTTCGAGGCACGTGGAGGGTCGCCCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTATGGACGTCCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGCCGTTATTTCGGCATTTCGGTGCTTCTGGAACTAGAGCAGGTTTGCTTGAACATCTTTTTAGATGAATAATTTCGATTTTATTAATGGTTGAATTTCATGTTTGTGTAAAAGTTGAAGCGATTAGTTTGTGATTTAATGTAGCGCTTTGTACGTAGTTAGAACCGATATTTTGATAATTTTTAGATTCTAGTTGTATTTCTTCTTGTTTTATTAAACTTGTTTTCATGTTATCAGGTTTTGGAGGATATTCGTGTTTGTTTGAACCTATGTGGTGGGCCGAGATGATAAGTAGTAAGTTTCTTCTTCATTCATTTCGTTGCTTATTCATATTGTTATCACGTCCAAACCTCGAGATGCTAAAACTAGCAGCGTTCTCAAGAAAGCATTACCATATTCACTAGCATTTGAATTTTTGTTTGATGAGTTTTCAAACTCTGCTCGTGTGTGTTTAATCTCTTTTTTTCTCCAGTTGATTTCTCTTTTGAGTGTTTCCTTTTCTGAATTCAAGTAGTTAATTAAGGTTTAAGAACTCAGAAGAATTCTTATCTATGAATATGAATACTTCAAGTTACAAGGTACAAAATTAGTTGTCGCTGCTTTTCTCTTTGGAATTAGGAGTTTCTCTAATTTTACCATATTTATCACTTCCAAATTCAAACACATAGCCATTGCATTTTGTTTTGCTGGTCC

mRNA sequence

TCAATCTCATCACTTTCTCCCCTCTCTTCTCTGATCAGTCGCCAACGCACGTGAACTCGCCGCCGTGCTATCATCGTAGGCAGCTTCTTCCGTTGCCGCATCGTGCTCGTGCCTCACGTGGAACACTCACCCTCCTCACCACCGACACGTTACCGGCTCGGGATCGAAATGGTTCGAGGCACGTGGAGGGTCGCCCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTATGGACGTCCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGCCGTTATTTCGGCATTTCGGTGCTTCTGGAACTAGAGCAGGTTTTGGAGGATATTCGTGTTTGTTTGAACCTATGTGGTGGGCCGAGATGATAAGTAGTAAGTTTCTTCTTCATTCATTTCGTTGCTTATTCATATTGTTATCACGTCCAAACCTCGAGATGCTAAAACTAGCAGCGTTCTCAAGAAAGCATTACCATATTCACTAGCATTTGAATTTTTGTTTGATGAGTTTTCAAACTCTGCTCGTGTGTGTTTAATCTCTTTTTTTCTCCAGTTGATTTCTCTTTTGAGTGTTTCCTTTTCTGAATTCAAGTAGTTAATTAAGGTTTAAGAACTCAGAAGAATTCTTATCTATGAATATGAATACTTCAAGTTACAAGGTACAAAATTAGTTGTCGCTGCTTTTCTCTTTGGAATTAGGAGTTTCTCTAATTTTACCATATTTATCACTTCCAAATTCAAACACATAGCCATTGCATTTTGTTTTGCTGGTCC

Coding sequence (CDS)

AATCTCATCACTTTCTCCCCTCTCTTCTCTGATCAGTCGCCAACGCACGTGAACTCGCCGCCGTGCTATCATCGTAGGCAGCTTCTTCCGTTGCCGCATCGTGCTCGTGCCTCACGTGGAACACTCACCCTCCTCACCACCGACACGTTACCGGCTCGGGATCGAAATGGTTCGAGGCACGTGGAGGGTCGCCCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTATGGACGTCCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGCCGTTATTTCGGCATTTCGGTGCTTCTGGAACTAGAGCAGGTTTTGGAGGATATTCGTGTTTGTTTGAACCTATGTGGTGGGCCGAGATGATAAGTAGTAAGTTTCTTCTTCATTCATTTCGTTGCTTATTCATATTGTTATCACGTCCAAACCTCGAGATGCTAAAACTAGCAGCGTTCTCAAGAAAGCATTACCATATTCACTAG

Protein sequence

NLITFSPLFSDQSPTHVNSPPCYHRRQLLPLPHRARASRGTLTLLTTDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPLFRHFGASGTRAGFGGYSCLFEPMWWAEMISSKFLLHSFRCLFILLSRPNLEMLKLAAFSRKHYHIH
Homology
[Close]
BLAST of MELO3C031944.2 vs. NCBI nr
Match: XP_020156028.1 (probable magnesium transporter NIPA4 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 53.1 bits (126), Expect = 1.0e-03
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 47  TDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPL--FRHFGASG 106
           T T  A    G   VE   GM    ++  G+ V        +G  F+V     R  GASG
Sbjct: 5   TSTSAAAGSGGGSWVESYTGMSTDNIK--GL-VLALSSSVFIGTSFIVKKKGLRKAGASG 64

Query: 107 TRAGFGGYSCLFEPMWWAEMIS 127
            RAG GGYS L+EP+WWA MI+
Sbjct: 65  VRAGVGGYSYLYEPLWWAGMIT 83

[Close]
BLAST of MELO3C031944.2 vs. NCBI nr
Match: CDM85447.1 (unnamed protein product [Triticum aestivum])

HSP 1 Score: 53.1 bits (126), Expect = 1.0e-03
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 47  TDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPL--FRHFGASG 106
           T T  A    G   VE   GM    ++  G+ V        +G  F+V     R  GASG
Sbjct: 5   TSTSAAAGSGGGSWVESYTGMSTDNIK--GL-VLALSSSVFIGTSFIVKKKGLRKAGASG 64

Query: 107 TRAGFGGYSCLFEPMWWAEMIS 127
            RAG GGYS L+EP+WWA MI+
Sbjct: 65  VRAGVGGYSYLYEPLWWAGMIT 83

[Close]
BLAST of MELO3C031944.2 vs. TAIR10
Match: AT1G34470.1 (Protein of unknown function (DUF803))

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 88  VGVPFVVPL--FRHFGASGTRAGFGGYSCLFEPMWWAEMIS 127
           +G  F+V     +  GASG RAG GGYS L EP+WW  MI+
Sbjct: 33  IGASFIVKKKGLKRAGASGLRAGSGGYSYLLEPLWWVGMIT 73

[Close]
BLAST of MELO3C031944.2 vs. TAIR10
Match: AT2G21120.1 (Protein of unknown function (DUF803))

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-05
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 101 GASGTRAGFGGYSCLFEPMWWAEMIS 127
           GA GTRAG+GGY+ L EP+WWA M++
Sbjct: 34  GAIGTRAGYGGYTYLLEPLWWAGMVT 59

[Close]
BLAST of MELO3C031944.2 vs. TAIR10
Match: AT4G09640.1 (Protein of unknown function (DUF803))

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-05
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 88  VGVPFVVPL--FRHFGASGTRAGFGGYSCLFEPMWWAEMIS 127
           +G  F+V     +  GASG RAG GGYS L EP+WW  MI+
Sbjct: 33  IGASFIVKKKGLKKAGASGLRAGSGGYSYLLEPLWWIGMIT 73

[Close]
BLAST of MELO3C031944.2 vs. TAIR10
Match: AT4G38730.1 (Protein of unknown function (DUF803))

HSP 1 Score: 44.3 bits (103), Expect = 8.4e-05
Identity = 16/28 (57.14%), Postives = 22/28 (78.57%), Query Frame = 0 

Query: 102 ASGTRAGFGGYSCLFEPMWWAEMISSKF 130
           A+GTRAGFGGY+ L EP+WW  +++  F
Sbjct: 35  ANGTRAGFGGYTYLLEPLWWVGLVTMTF 62

[Close]
BLAST of MELO3C031944.2 vs. TAIR10
Match: AT4G13800.1 (Protein of unknown function (DUF803))

HSP 1 Score: 43.1 bits (100), Expect = 1.9e-04
Identity = 19/41 (46.34%), Postives = 25/41 (60.98%), Query Frame = 0 

Query: 88  VGVPFVVPL--FRHFGASGTRAGFGGYSCLFEPMWWAEMIS 127
           +G  F++     +  G SG RAG GGY  L+EP WWA MI+
Sbjct: 22  IGSSFIIKKKGLKKAGVSGARAGEGGYGYLYEPWWWAGMIT 62

[Close]
BLAST of MELO3C031944.2 vs. Swiss-Prot
Match: sp|Q9LNK7|NIPA3_ARATH (Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana OX=3702 GN=At1g34470 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.0e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 88  VGVPFVVPL--FRHFGASGTRAGFGGYSCLFEPMWWAEMIS 127
           +G  F+V     +  GASG RAG GGYS L EP+WW  MI+
Sbjct: 33  IGASFIVKKKGLKRAGASGLRAGSGGYSYLLEPLWWVGMIT 73

[Close]
BLAST of MELO3C031944.2 vs. Swiss-Prot
Match: sp|F4JKQ7|NIPA5_ARATH (Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana OX=3702 GN=At4g09640 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.8e-04
Identity = 21/41 (51.22%), Postives = 26/41 (63.41%), Query Frame = 0 

Query: 88  VGVPFVVPL--FRHFGASGTRAGFGGYSCLFEPMWWAEMIS 127
           +G  F+V     +  GASG RAG GGYS L EP+WW  MI+
Sbjct: 33  IGASFIVKKKGLKKAGASGLRAGSGGYSYLLEPLWWIGMIT 73

[Close]
BLAST of MELO3C031944.2 vs. Swiss-Prot
Match: sp|Q8GWX2|NIPA6_ARATH (Probable magnesium transporter NIPA6 OS=Arabidopsis thaliana OX=3702 GN=At2g21120 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.8e-04
Identity = 17/26 (65.38%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 101 GASGTRAGFGGYSCLFEPMWWAEMIS 127
           GA GTRAG+GGY+ L EP+WWA M++
Sbjct: 34  GAIGTRAGYGGYTYLLEPLWWAGMVT 59

[Close]
BLAST of MELO3C031944.2 vs. TrEMBL
Match: tr|R7WAK5|R7WAK5_AEGTA (Probable magnesium transporter OS=Aegilops tauschii OX=37682 GN=F775_07463 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 47  TDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPL--FRHFGASG 106
           T T  A    G   VE   GM    ++  G+ V        +G  F+V     R  GASG
Sbjct: 5   TSTSAAAGSGGGSWVESYTGMSTDNIK--GL-VLALSSSVFIGTSFIVKKKGLRKAGASG 64

Query: 107 TRAGFGGYSCLFEPMWWAEMIS 127
            RAG GGYS L+EP+WWA MI+
Sbjct: 65  VRAGVGGYSYLYEPLWWAGMIT 83

[Close]
BLAST of MELO3C031944.2 vs. TrEMBL
Match: tr|A0A077RYC8|A0A077RYC8_WHEAT (Probable magnesium transporter OS=Triticum aestivum OX=4565 GN=TRAES_3BF021600130CFD_c1 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 47  TDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPL--FRHFGASG 106
           T T  A    G   VE   GM    ++  G+ V        +G  F+V     R  GASG
Sbjct: 5   TSTSAAAGSGGGSWVESYTGMSTDNIK--GL-VLALSSSVFIGTSFIVKKKGLRKAGASG 64

Query: 107 TRAGFGGYSCLFEPMWWAEMIS 127
            RAG GGYS L+EP+WWA MI+
Sbjct: 65  VRAGVGGYSYLYEPLWWAGMIT 83

[Close]
BLAST of MELO3C031944.2 vs. TrEMBL
Match: tr|A0A287M954|A0A287M954_HORVV (Probable magnesium transporter OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 47  TDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPL--FRHFGASG 106
           T T  A    G   VE   GM    ++  G+ V        +G  F+V     R  GASG
Sbjct: 4   TSTSAAAGSGGGSWVESYTGMSTDNIK--GL-VLALSSSVFIGTSFIVKKKGLRKAGASG 63

Query: 107 TRAGFGGYSCLFEPMWWAEMIS 127
            RAG GGYS L+EP+WWA MI+
Sbjct: 64  VRAGVGGYSYLYEPLWWAGMIT 82

[Close]
BLAST of MELO3C031944.2 vs. TrEMBL
Match: tr|A0A287M956|A0A287M956_HORVV (Probable magnesium transporter OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 47  TDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPL--FRHFGASG 106
           T T  A    G   VE   GM    ++  G+ V        +G  F+V     R  GASG
Sbjct: 8   TSTSAAAGSGGGSWVESYTGMSTDNIK--GL-VLALSSSVFIGTSFIVKKKGLRKAGASG 67

Query: 107 TRAGFGGYSCLFEPMWWAEMIS 127
            RAG GGYS L+EP+WWA MI+
Sbjct: 68  VRAGVGGYSYLYEPLWWAGMIT 86

[Close]
BLAST of MELO3C031944.2 vs. TrEMBL
Match: tr|A0A287M945|A0A287M945_HORVV (Probable magnesium transporter OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.6e-04
Identity = 33/82 (40.24%), Postives = 41/82 (50.00%), Query Frame = 0 

Query: 47  TDTLPARDRNGSRHVEGRPGMGLGCVRTWGMDVRRRDDMSSVGVPFVVPL--FRHFGASG 106
           T T  A    G   VE   GM    ++  G+ V        +G  F+V     R  GASG
Sbjct: 8   TSTSAAAGSGGGSWVESYTGMSTDNIK--GL-VLALSSSVFIGTSFIVKKKGLRKAGASG 67

Query: 107 TRAGFGGYSCLFEPMWWAEMIS 127
            RAG GGYS L+EP+WWA MI+
Sbjct: 68  VRAGVGGYSYLYEPLWWAGMIT 86

The following BLAST results are available for this feature:
BLAST of MELO3C031944.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_020156028.11.0e-0340.24probable magnesium transporter NIPA4 [Aegilops tauschii subsp. tauschii][more]
CDM85447.11.0e-0340.24unnamed protein product [Triticum aestivum][more]
BLAST of MELO3C031944.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G34470.12.2e-0551.22Protein of unknown function (DUF803)[more]
AT2G21120.13.8e-0565.38Protein of unknown function (DUF803)[more]
AT4G09640.13.8e-0551.22Protein of unknown function (DUF803)[more]
AT4G38730.18.4e-0557.14Protein of unknown function (DUF803)[more]
AT4G13800.11.9e-0446.34Protein of unknown function (DUF803)[more]
BLAST of MELO3C031944.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LNK7|NIPA3_ARATH4.0e-0451.22Probable magnesium transporter NIPA3 OS=Arabidopsis thaliana OX=3702 GN=At1g3447... [more]
sp|F4JKQ7|NIPA5_ARATH6.8e-0451.22Probable magnesium transporter NIPA5 OS=Arabidopsis thaliana OX=3702 GN=At4g0964... [more]
sp|Q8GWX2|NIPA6_ARATH6.8e-0465.38Probable magnesium transporter NIPA6 OS=Arabidopsis thaliana OX=3702 GN=At2g2112... [more]
BLAST of MELO3C031944.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|R7WAK5|R7WAK5_AEGTA6.6e-0440.24Probable magnesium transporter OS=Aegilops tauschii OX=37682 GN=F775_07463 PE=3 ... [more]
tr|A0A077RYC8|A0A077RYC8_WHEAT6.6e-0440.24Probable magnesium transporter OS=Triticum aestivum OX=4565 GN=TRAES_3BF02160013... [more]
tr|A0A287M954|A0A287M954_HORVV6.6e-0440.24Probable magnesium transporter OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 ... [more]
tr|A0A287M956|A0A287M956_HORVV6.6e-0440.24Probable magnesium transporter OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 ... [more]
tr|A0A287M945|A0A287M945_HORVV6.6e-0440.24Probable magnesium transporter OS=Hordeum vulgare subsp. vulgare OX=112509 PE=3 ... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1903830 magnesium ion transmembrane transport
biological_process GO:0015693 magnesium ion transport
cellular_component GO:0005769 early endosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0015095 magnesium ion transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031944.2.1MELO3C031944.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031944.2Cucurbita maxima (Rimu)cmamedB777
MELO3C031944.2Cucurbita moschata (Rifu)cmomedB332
MELO3C031944.2Cucurbita moschata (Rifu)cmomedB774
MELO3C031944.2Cucurbita pepo (Zucchini)cpemedB234
MELO3C031944.2Cucurbita pepo (Zucchini)cpemedB481
MELO3C031944.2Wild cucumber (PI 183967)cpimedB233
MELO3C031944.2Wild cucumber (PI 183967)cpimedB239
MELO3C031944.2Cucumber (Chinese Long) v2cumedB232
MELO3C031944.2Cucumber (Chinese Long) v2cumedB238
MELO3C031944.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C031944.2Watermelon (Charleston Gray)medwcgB417
MELO3C031944.2Watermelon (97103) v1medwmB448
MELO3C031944.2Silver-seed gourdcarmedB0384
MELO3C031944.2Silver-seed gourdcarmedB0661
MELO3C031944.2Cucumber (Chinese Long) v3cucmedB240
MELO3C031944.2Cucumber (Chinese Long) v3cucmedB246
MELO3C031944.2Watermelon (97103) v2medwmbB424
MELO3C031944.2Wax gourdmedwgoB531
MELO3C031944.2Cucumber (Gy14) v2cgybmedB210
MELO3C031944.2Cucumber (Gy14) v2cgybmedB215
MELO3C031944.2Cucurbita maxima (Rimu)cmamedB346