MELO3C031940.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031940.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr06 : 11243036 .. 11243476 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCAATAAATGGGCGCATTCCGATGACGATCACCCCGGAGCGGAGAAGCCTATTTCCTCACACGCCGTTCGCTTCAACCAAACGATAGGCGTGTGTGCGCGAAAGACCCATCCACTGCCTTAAGTGGGTGGACGTTGGGAGAGAATATATTAAGGTCGTCAAAGGCGACCTCCAGGTAATTAAGTGCACTACACATTTATGATTTCATTTGAAACATATCTAAGTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTATTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATACTCACGACCTTTAAAGATTTCCAGACCAATTGTCACAGACATTTCATAAAGTACAGCGACCCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

mRNA sequence

ATGTTCAATAAATGGGCGCATTCCGATGACGATCACCCCGGAGCGGAGAAGCCTATTTCCTCACACGCCGTTCGCTTCAACCAAACGATAGGCCGATTATTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATACTCACGACCTTTAAAGATTTCCAGACCAATTGTCACAGACATTTCATAAAGTACAGCGACCCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

Coding sequence (CDS)

ATGTTCAATAAATGGGCGCATTCCGATGACGATCACCCCGGAGCGGAGAAGCCTATTTCCTCACACGCCGTTCGCTTCAACCAAACGATAGGCCGATTATTTGTGCTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGAGCATCAGATACTCACGACCTTTAAAGATTTCCAGACCAATTGTCACAGACATTTCATAAAGTACAGCGACCCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

Protein sequence

MFNKWAHSDDDHPGAEKPISSHAVRFNQTIGRLFVLDFNDQAMNRFVEHQILTTFKDFQTNCHRHFIKYSDPEEARANPPNALVGRHED

Homology

[Close]

BLAST of MELO3C031940.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 64/107 (59.81%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 13  PGAEKPISSHAVRFNQTIG------------------------------RLFVLDFNDQA 72
           PGAEKPIS +AV F+Q IG                              R FVLDFNDQA
Sbjct: 66  PGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQA 125

Query: 73  MNRFVEHQILTTFKDFQTNCHRHFIKYSDPEEARANPPNALVGRHED 90
           MNRFVEHQ++TTFK+FQ +CHRHF KYSDPEEARANPPNALVGR ED
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C031940.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 3.0e-18
Identity = 55/107 (51.40%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 13  PGAEKPISSHAVRFNQTIG------------------------------RLFVLDFNDQA 72
           PGAE PI  +A+RF+Q IG                              R FVLDFNDQA
Sbjct: 75  PGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDFNDQA 134

Query: 73  MNRFVEHQILTTFKDFQTNCHRHFIKYSDPEEARANPPNALVGRHED 90
           +NRFVEHQ+LTTFK+F  +CHRHF      +EARANPPN LVGRHED
Sbjct: 135 INRFVEHQMLTTFKEFWGDCHRHF------KEARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C031940.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-14
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 32  RLFVLDFNDQAMNRFVEHQILTTFKDFQTNCHRHFIKYSDPEEARANPPNALVGRHED 90
           + FVLDF+DQAMN  VE+Q+  TFK+F  +CH+ F KYSDPEEARANPPN LVGR+ED
Sbjct: 128 QFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

[Close]

BLAST of MELO3C031940.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.7e-25
Identity = 64/107 (59.81%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 13  PGAEKPISSHAVRFNQTIG------------------------------RLFVLDFNDQA 72
           PGAEKPIS +AV F+Q IG                              R FVLDFNDQA
Sbjct: 66  PGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVLDFNDQA 125

Query: 73  MNRFVEHQILTTFKDFQTNCHRHFIKYSDPEEARANPPNALVGRHED 90
           MNRFVEHQ++TTFK+FQ +CHRHF KYSDPEEARANPPNALVGR ED
Sbjct: 126 MNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C031940.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.0e-18
Identity = 55/107 (51.40%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 13  PGAEKPISSHAVRFNQTIG------------------------------RLFVLDFNDQA 72
           PGAE PI  +A+RF+Q IG                              R FVLDFNDQA
Sbjct: 75  PGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVLDFNDQA 134

Query: 73  MNRFVEHQILTTFKDFQTNCHRHFIKYSDPEEARANPPNALVGRHED 90
           +NRFVEHQ+LTTFK+F  +CHRHF      +EARANPPN LVGRHED
Sbjct: 135 INRFVEHQMLTTFKEFWGDCHRHF------KEARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C031940.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 32  RLFVLDFNDQAMNRFVEHQILTTFKDFQTNCHRHFIKYSDPEEARANPPNALVGRHED 90
           + FVLDF+DQAMN  VE+Q+  TFK+F  +CH+ F KYSDPEEARANPPN LVGR+ED
Sbjct: 128 QFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

The following BLAST results are available for this feature:

BLAST of MELO3C031940.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	2.5e-25	59.81	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901035.1	3.0e-18	51.40	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_016901155.1	2.6e-14	68.97	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]

BLAST of MELO3C031940.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031940.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031940.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	1.7e-25	59.81	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	2.0e-18	51.40	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	1.7e-14	68.97	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031940.2.1	MELO3C031940.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031940.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031940.2	Cucumber (Gy14) v1	cgymedB002
MELO3C031940.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C031940.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C031940.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C031940.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C031940.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C031940.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C031940.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031940.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031940.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031940.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031940.2	Watermelon (97103) v1	medwmB448
MELO3C031940.2	Silver-seed gourd	carmedB0064
MELO3C031940.2	Silver-seed gourd	carmedB0661
MELO3C031940.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031940.2	Watermelon (97103) v2	medwmbB424
MELO3C031940.2	Wax gourd	medwgoB531