MELO3C031939.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031939.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	NBS-LRR type resistance protein
Location	chr06 : 11242019 .. 11242987 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAATTATGATAACAAGTTTTAATATGTATAAGAAATAAACAATATAATTGTTTTCATGTAGAAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAATAGTGGGTCAAAGTCGTTTTTATAACGACAGTACAAGCTCGCTGAGAGAAAAGGTAAGCCAGTCAATCGTGTGGAGTTGTTCCAAGAAACACATGTTCGAGTTGGAACGTTCGTGTCGCAGGCCGTAGAGGATGCGCTGTAAGTTATGCCCTTATTAATTATCCTCTTTCATTATATATTTTTGCGTGTTACCTAACATAGTTTTTAAATTTGTTGCAGAATCAAATGCTGGAACTCCAATCCCAGCCTACCCTAGAGGGTAGTCAGCCACTCTCGGAGGATGAGATATGCGATCAGGTGTTGGGTAGATGACCAAGCTACTCAAAAGACCTTCGTTATGGACCTAAGCCGAAGGCCCGCAGGACGACGAGTGCGAGCAGTTCGTCAACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGTTAAACTTAATGAAGCTTTGAAACATATTGGATGAAAGATAGAAATCACCAAGGGTTAGCTGCACAAGTGGAACGAATGCAAAAGTTGATAGAAGACTTCAATCGTGCACAACAGGGACCACCACATGATCCTTAGCTCTGCGGTACGTATATATGTCTCCATTATTTTTAAGTTTCTGCAATGATAGTATACAGTGAACATATAGATATATGTACTAAACTTAGTTACTTTTATATCATTTTAGCACTGAAGGTGTAGAATGATGCGTACGTGCCTCATTGGGAGACTTTTTGTTATCTTTGTGTTTTCTTATATTGTGAGAACTACATTTTTTGTATTAAACTTACTAATATTTTGTGAACTTATTTGTATTATTAATTTTAAATCTTTTTATTTAATTTGTGTTTGTATTTCTTAAT

mRNA sequence

ATGATTAATTATGATAACAAAAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAATAGTGGGTCAAAGTCGTTTTTATAACGACAGTACAAGCTCGCTGAGAGAAAAGAATCAAATGCTGGAACTCCAATCCCAGCCTACCCTAGAGGGTAGTCAGCCACTCTCGGAGGATGAGATATGCGATCAGGTGTTGGGTAGATGACCAAGCTACTCAAAAGACCTTCGTTATGGACCTAAGCCGAAGGCCCGCAGGACGACGAGTGCGAGCAGTTCGTCAACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGTTAAACTTAATGAAGCTTTGAAACATATTGGATGAAAGATAGAAATCACCAAGGGTTAGCTGCACAAGTGGAACGAATGCAAAAGTTGATAGAAGACTTCAATCGTGCACAACAGGGACCACCACATGATCCTTAGCTCTGCGCACTGAAGGTGTAGAATGATGCGTACGTGCCTCATTGGGAGACTTTTTGTTATCTTTGTGTTTTCTTATATTGTGAGAACTACATTTTTTGTATTAAACTTATTGTATTATTAATTTTAAATCTTTTTATTTAATTTGTGTTTGTATTTCTTAAT

Coding sequence (CDS)

ATGATTAATTATGATAACAAAAGCAATCACGGACGAACAAGGCTGCTAGACAGAAGCAGCCTTACAATCATAATAGTGGGTCAAAGTCGTTTTTATAACGACAGTACAAGCTCGCTGAGAGAAAAGAATCAAATGCTGGAACTCCAATCCCAGCCTACCCTAGAGGGTAGTCAGCCACTCTCGGAGGATGAGATATGCGATCAGGTGTTGGGTAGATGA

Protein sequence

MINYDNKSNHGRTRLLDRSSLTIIIVGQSRFYNDSTSSLREKNQMLELQSQPTLEGSQPLSEDEICDQVLGR

Homology

[Close]

BLAST of MELO3C031939.2 vs. NCBI nr
Match: ADN34241.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 57.8 bits (138), Expect = 1.8e-05
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 6  NKSNHGRTRLLDRSSLTIIIVGQSRFYNDSTSSLREK 43
          ++SNH RTRLLDRSSLTII+ G S FYNDS SSL+E+
Sbjct: 16 SRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEE 52

[Close]

BLAST of MELO3C031939.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 53.1 bits (126), Expect = 4.4e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 43  NQMLELQSQPTLEGSQPLSEDEICD 68
           NQMLELQSQPTLEGSQPLSEDEICD
Sbjct: 251 NQMLELQSQPTLEGSQPLSEDEICD 275

[Close]

BLAST of MELO3C031939.2 vs. TrEMBL
Match: tr|E5GCP2|E5GCP2_CUCME (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-05
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 6  NKSNHGRTRLLDRSSLTIIIVGQSRFYNDSTSSLREK 43
          ++SNH RTRLLDRSSLTII+ G S FYNDS SSL+E+
Sbjct: 16 SRSNHRRTRLLDRSSLTIIVAGPSHFYNDSMSSLKEE 52

[Close]

BLAST of MELO3C031939.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 43  NQMLELQSQPTLEGSQPLSEDEICD 68
           NQMLELQSQPTLEGSQPLSEDEICD
Sbjct: 251 NQMLELQSQPTLEGSQPLSEDEICD 275

The following BLAST results are available for this feature:

BLAST of MELO3C031939.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34241.1	1.8e-05	72.97	NBS-LRR type resistance protein [Cucumis melo subsp. melo]	[more]
ADN34071.1	4.4e-04	100.00	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C031939.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031939.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031939.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GCP2\|E5GCP2_CUCME	1.2e-05	72.97	NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|E5GC72\|E5GC72_CUCME	2.9e-04	100.00	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031939.2.1	MELO3C031939.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..72

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031939.2	Wax gourd	medwgoB531
MELO3C031939.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031939.2	Cucumber (Gy14) v1	cgymedB002
MELO3C031939.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C031939.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C031939.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C031939.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C031939.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C031939.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C031939.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031939.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031939.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031939.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031939.2	Watermelon (97103) v1	medwmB448
MELO3C031939.2	Silver-seed gourd	carmedB0064
MELO3C031939.2	Silver-seed gourd	carmedB0661
MELO3C031939.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031939.2	Watermelon (97103) v2	medwmbB424