MELO3C031934.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031934.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	WD-40 repeat-containing protein MSI4
Location	chr06 : 11065033 .. 11066794 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGGAATGATAATCTGAAAGAGCCGAAGTGGTTTTCTTCACAGATATTTCGAGTGATTTGATGGAAGAAAGGTTTGTGATAGAGTGAGAGTGAGTGTGATGGAATAAATATTTTTTTTTTTTAATAAATAGGGTTGGTTTGATGTTGTGAGCGAAATTAACAAGGATTGCAAGTATGGCGATGAAGATGTTCGTGGGACAGGAGAGATTTGCAACAGTTCTTCTGATGAGACTGACTGAAACAGTGATATTGTGGCTTTTTTAAGATAAAGCTTTTTGGGAAGAGGTTGAAGAAGGGTCTCGCCCGCCTCGCCCATTGGGCCCTTCGACCTTCAGCAAGTAAGTTCTTGACAACAAATAAACTGAGGTCTAACCTCTATTTGAATAGATCTATTTTATATAAAAAATTACCAAAATTAAATTATCTCTATTAAAATTGTTGGATCTGTTTATGTTTAACCTCCAATTTTGGTTTTTTTTCTCTTCAATGTAATCCCAAACCTGAGCTGAATTGGAGTTCAAGTTTGATCTTTCACGGTGGTTTCAGTTGGAGACTTTGTGGCTTCTTCAATCTTCAAGTCAATTTCGGTTCTAATTCAGTCCTTCACCGTTCGAATTTCGTTTTCCGATCTTATTTCTACTTTCGAGTTGGGTTTTTAGTTCTTGTGGACAATAGTTTTTAGTTCTTGGGTTTTTAGTTCTCTATGTAATTATGTTGAATTGCAGCTGAGGATTGTTTACTTATGGTGTATAGCTAGATGTTGCTATATCACGTTGAAGATTGTTTTGTAAATGTTATTTACTTTTTGTTTTTTCTTTTCATTCTTTGTTATCAGACTGATGGTAGTGTTCCAAATACACTAGTTATTGCAAATTGTGAAGTTGTGAGGCCTAGAGTTGCAACTGCAGAGTACATCTTTAAGGTGATTGATCAATTTCAAAGTCCAAAACCACTGTTTGCCGACTAAAAATTATAACTTGGTCCCTTCTTTTTCAGTTTTCTTCATTTTCTTAATTATAACTTGTGTTTGTTATGTAAAAATAAAATCTAGAAATTTAAACTTGATGAATATGATTGGCTAAAGAGAAGTTTATGTTCCTTGGTTTGTTATTCATTTGTTATAATTAATAGTAAAGTTAGATATTGTTATTGGTTGCATATGTTTCCTCTGTGCTTCTAAAAAATGTTTGGTTTGGCTTTCATGTTGACAATAAGATATTGCTTTGCAATAGGTGCTAACTCAACAACGCCTTTGTCCATTCCCTAAGGTACCGTAACTCAAAAACGCATTTTAACTATTTTGTGATTTTTTTAAAGGTATATTGATAATTTGGTAAAATATATTGATGGTTTTGTGAAATATATTATTGGCTATGTGAAGAAGCATTTTGGTAGCTTACAATGTCTTGGTGTATTTTGGTTCAGATTGTGGAATCCAAGTTTGTATTTAAAGTCGAGATCATCCAAGATTATTGAGTTCCAAGCTTGATGTCTAGCTATTACTTTAGTTTTGAGGACATTCATTCCCTTGCCAAGATTTTTAGTTCTTTTATCCTTTAATGTGTGTAATTTTTATGGTATATCATATGTAGTTAAGGTAGAATTTTTACTTCTCTTGCTAAGGTAGAATTTGAATTTTTTATCAAAGAATTGTTAAAAGATATATTTGGGTTTAATTGATTTCAAGTAGTTACTTGCTTCAAACAGTGAAATTCAGTGACTGTGTTCTTTCTTCTAGGCTAGGAACGAACACCTAA

mRNA sequence

ATGGATGGGAATGATAATCTGAAAGAGCCGAAGTGGTTTTCTTCACAGATATTTCGAGGTTGGTTTGATGTTGTGAGCGAAATTAACAAGGATTGCAAGTATGGCGATGAAGATATAAAGCTTTTTGGGAAGAGGTTGAAGAAGGGTCTCGCCCGCCTCGCCCATTGGGCCCTTCGACCTTCAGCAATTGGAGACTTTGTGGCTTCTTCAATCTTCAAGTCAATTTCGGTTCTAATTCAGTCCTTCACCGTTCGAATTTCGTTTTCCGATCTTATTTCTACTTTCGAGTTGGCTGAGGATTGTTTACTTATGACTGATGGTAGTGTTCCAAATACACTAGTTATTGCAAATTGTGAAGTTGTGAGGCCTAGAGTTGCAACTGCAGAGTACATCTTTAAGATATTGTTATTGGTTGCATATGTTTCCTCTGTGCTTCTAAAAAATGTTTGGTTTGGCTTTCATGTTGACAATAAGATATTGCTTTGCAATAGGTATATTGATAATTTGGTAAAATATATTGATGGTTTTGTGAAATATATTATTGGCTATGTGAAGAAGCATTTTGGTAGCTTACAATGTCTTGGTGTATTTTGGTTCAGATTGTGGAATCCAAGTTTTTACTTGCTTCAAACAGTGAAATTCAGTGACTGTGTTCTTTCTTCTAGGCTAGGAACGAACACCTAA

Coding sequence (CDS)

ATGGATGGGAATGATAATCTGAAAGAGCCGAAGTGGTTTTCTTCACAGATATTTCGAGGTTGGTTTGATGTTGTGAGCGAAATTAACAAGGATTGCAAGTATGGCGATGAAGATATAAAGCTTTTTGGGAAGAGGTTGAAGAAGGGTCTCGCCCGCCTCGCCCATTGGGCCCTTCGACCTTCAGCAATTGGAGACTTTGTGGCTTCTTCAATCTTCAAGTCAATTTCGGTTCTAATTCAGTCCTTCACCGTTCGAATTTCGTTTTCCGATCTTATTTCTACTTTCGAGTTGGCTGAGGATTGTTTACTTATGACTGATGGTAGTGTTCCAAATACACTAGTTATTGCAAATTGTGAAGTTGTGAGGCCTAGAGTTGCAACTGCAGAGTACATCTTTAAGATATTGTTATTGGTTGCATATGTTTCCTCTGTGCTTCTAAAAAATGTTTGGTTTGGCTTTCATGTTGACAATAAGATATTGCTTTGCAATAGGTATATTGATAATTTGGTAAAATATATTGATGGTTTTGTGAAATATATTATTGGCTATGTGAAGAAGCATTTTGGTAGCTTACAATGTCTTGGTGTATTTTGGTTCAGATTGTGGAATCCAAGTTTTTACTTGCTTCAAACAGTGAAATTCAGTGACTGTGTTCTTTCTTCTAGGCTAGGAACGAACACCTAA

Protein sequence

MDGNDNLKEPKWFSSQIFRGWFDVVSEINKDCKYGDEDIKLFGKRLKKGLARLAHWALRPSAIGDFVASSIFKSISVLIQSFTVRISFSDLISTFELAEDCLLMTDGSVPNTLVIANCEVVRPRVATAEYIFKILLLVAYVSSVLLKNVWFGFHVDNKILLCNRYIDNLVKYIDGFVKYIIGYVKKHFGSLQCLGVFWFRLWNPSFYLLQTVKFSDCVLSSRLGTNT

Homology

[Close]

BLAST of MELO3C031934.2 vs. NCBI nr
Match: OMO67289.1 (hypothetical protein CCACVL1_20631 [Corchorus capsularis])

HSP 1 Score: 54.7 bits (130), Expect = 4.8e-04
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 102 LLMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           +L+TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 130 ILLTDGSVPNTLVIANCEVVKPRVAAAEHI 159

[Close]

BLAST of MELO3C031934.2 vs. NCBI nr
Match: POF03201.1 (wd-40 repeat-containing protein msi4 [Quercus suber])

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-04
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 102 LLMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           LL TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 23  LLPTDGSVPNTLVIANCEVVKPRVAAAEHI 52

[Close]

BLAST of MELO3C031934.2 vs. NCBI nr
Match: POF23778.1 (wd-40 repeat-containing protein msi4 [Quercus suber])

HSP 1 Score: 53.9 bits (128), Expect = 8.2e-04
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 102 LLMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           LL TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 23  LLPTDGSVPNTLVIANCEVVKPRVAAAEHI 52

[Close]

BLAST of MELO3C031934.2 vs. TAIR10
Match: AT2G19520.1 (Transducin family protein / WD-40 repeat family protein)

HSP 1 Score: 52.0 bits (123), Expect = 5.6e-07
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 105 TDGSVPNTLVIANCEVVRPRVATAEYI 132
           TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 117 TDGSVPNTLVIANCEVVKPRVAAAEHI 143

[Close]

BLAST of MELO3C031934.2 vs. Swiss-Prot
Match: sp|O22607|MSI4_ARATH (WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 1.0e-05
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 0


Query: 105 TDGSVPNTLVIANCEVVRPRVATAEYI 132
           TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 117 TDGSVPNTLVIANCEVVKPRVAAAEHI 143

[Close]

BLAST of MELO3C031934.2 vs. TrEMBL
Match: tr|A0A1R3HAA4|A0A1R3HAA4_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20631 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.2e-04
Identity = 25/30 (83.33%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 102 LLMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           +L+TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 130 ILLTDGSVPNTLVIANCEVVKPRVAAAEHI 159

[Close]

BLAST of MELO3C031934.2 vs. TrEMBL
Match: tr|A0A2P4N1W9|A0A2P4N1W9_QUESU (Wd-40 repeat-containing protein msi4 OS=Quercus suber OX=58331 GN=CFP56_13715 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-04
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 102 LLMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           LL TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 23  LLPTDGSVPNTLVIANCEVVKPRVAAAEHI 52

[Close]

BLAST of MELO3C031934.2 vs. TrEMBL
Match: tr|A0A2P4LD61|A0A2P4LD61_QUESU (Wd-40 repeat-containing protein msi4 OS=Quercus suber OX=58331 GN=CFP56_54730 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.4e-04
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 102 LLMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           LL TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 23  LLPTDGSVPNTLVIANCEVVKPRVAAAEHI 52

[Close]

BLAST of MELO3C031934.2 vs. TrEMBL
Match: tr|A0A068TNU8|A0A068TNU8_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021862001 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.1e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 97  LAEDCLLMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           L+E     TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 71  LSEQARQSTDGSVPNTLVIANCEVVKPRVAAAEHI 105

[Close]

BLAST of MELO3C031934.2 vs. TrEMBL
Match: tr|A0A1D6G362|A0A1D6G362_MAIZE (WD-40 repeat-containing protein MSI4 OS=Zea mays OX=4577 GN=541934 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.2e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 103 LMTDGSVPNTLVIANCEVVRPRVATAEYI 132
           L TDGSVPNTLVIANCEVV+PRVA AE+I
Sbjct: 91  LQTDGSVPNTLVIANCEVVKPRVAAAEHI 119

The following BLAST results are available for this feature:

BLAST of MELO3C031934.2 vs. NCBI nr


Match Name	E-value	Identity	Description
OMO67289.1	4.8e-04	83.33	hypothetical protein CCACVL1_20631 [Corchorus capsularis]	[more]
POF03201.1	8.2e-04	86.67	wd-40 repeat-containing protein msi4 [Quercus suber]	[more]
POF23778.1	8.2e-04	86.67	wd-40 repeat-containing protein msi4 [Quercus suber]	[more]

BLAST of MELO3C031934.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G19520.1	5.6e-07	88.89	Transducin family protein / WD-40 repeat family protein	[more]

BLAST of MELO3C031934.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22607\|MSI4_ARATH	1.0e-05	88.89	WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=...	[more]

BLAST of MELO3C031934.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1R3HAA4\|A0A1R3HAA4_COCAP	3.2e-04	83.33	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_20631 PE=4 ...	[more]
tr\|A0A2P4N1W9\|A0A2P4N1W9_QUESU	5.4e-04	86.67	Wd-40 repeat-containing protein msi4 OS=Quercus suber OX=58331 GN=CFP56_13715 PE...	[more]
tr\|A0A2P4LD61\|A0A2P4LD61_QUESU	5.4e-04	86.67	Wd-40 repeat-containing protein msi4 OS=Quercus suber OX=58331 GN=CFP56_54730 PE...	[more]
tr\|A0A068TNU8\|A0A068TNU8_COFCA	7.1e-04	74.29	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021862001 PE=4 ...	[more]
tr\|A0A1D6G362\|A0A1D6G362_MAIZE	9.2e-04	86.21	WD-40 repeat-containing protein MSI4 OS=Zea mays OX=4577 GN=541934 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031934.2.1	MELO3C031934.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031934.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031934.2	Cucumber (Gy14) v1	cgymedB002
MELO3C031934.2	Cucurbita maxima (Rimu)	cmamedB346
MELO3C031934.2	Cucurbita maxima (Rimu)	cmamedB777
MELO3C031934.2	Cucurbita moschata (Rifu)	cmomedB332
MELO3C031934.2	Cucurbita moschata (Rifu)	cmomedB774
MELO3C031934.2	Cucurbita pepo (Zucchini)	cpemedB234
MELO3C031934.2	Cucurbita pepo (Zucchini)	cpemedB481
MELO3C031934.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031934.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031934.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031934.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031934.2	Watermelon (97103) v1	medwmB448
MELO3C031934.2	Silver-seed gourd	carmedB0661
MELO3C031934.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031934.2	Watermelon (97103) v2	medwmbB424
MELO3C031934.2	Wax gourd	medwgoB531