MELO3C031855.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031855.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	F-box protein At1g67340
Location	chr06 : 26236041 .. 26236267 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTTGTTGAGCAATTTCGGTTGCAATATCCCGGCACCAGAGGCTCATCTAGCAAGTCAGTTTTTAGCGAAATGGTTCGAGGCACGTGGGGGGTCGCTCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTGTGGACGTTCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGCCGTTATTTCGGCATTTCGGAGCTTCTGGAACTAGA

mRNA sequence

ATGTCTGTTGTTGAGCAATTTCGGTTGCAATATCCCGGCACCAGAGGCTCATCTAGCAAGTCAGTTTTTAGCGAAATGGTTCGAGGCACGTGGGGGGTCGCTCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTGTGGACGTTCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGCCGTTATTTCGGCATTTCGGAGCTTCTGGAACTAGA

Coding sequence (CDS)

TGTCTGTTGTTGAGCAATTTCGGTTGCAATATCCCGGCACCAGAGGCTCATCTAGCAAGTCAGTTTTTAGCGAAATGGTTCGAGGCACGTGGGGGGTCGCTCGGGAATGGGCTTAGGCTGTGTTCGCACGTGGGGTGTGGACGTTCGGAGACGAGACGACATGAGTTCCGTCGGTGTTCCGTTTGTGGTGCCGTTATTTCGGCATTTCGGAGCTTCTGGAACTAG

Protein sequence

CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCSVCGAVISAFRSFWN

Homology

[Close]

BLAST of MELO3C031855.2 vs. NCBI nr
Match: XP_004135325.1 (PREDICTED: F-box protein At1g67340 [Cucumis sativus] >KGN51672.1 hypothetical protein Csa_5G589890 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCNIPAPEAH ASQFLA+WFEARGGS GNGLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 273 CPLLSDFGCNIPAPEAHPASQFLAEWFEARGGSPGNGLRLCSHVGCGRPETRRHEFRRCS 332

Query: 61  VCGAV 66
           VCGAV
Sbjct: 333 VCGAV 337

[Close]

BLAST of MELO3C031855.2 vs. NCBI nr
Match: XP_008446037.1 (PREDICTED: F-box protein At1g67340 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 2.9e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCNIPAPEAH ASQFLA+WFEARGGS GNGLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 273 CPLLSDFGCNIPAPEAHPASQFLAEWFEARGGSPGNGLRLCSHVGCGRPETRRHEFRRCS 332

Query: 61  VCGAV 66
           VCGAV
Sbjct: 333 VCGAV 337

[Close]

BLAST of MELO3C031855.2 vs. NCBI nr
Match: XP_022998094.1 (F-box protein At1g67340 [Cucurbita maxima])

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCNIPAPEAH ASQFLA+WF ARGGS G+GLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 273 CPLLSDFGCNIPAPEAHPASQFLAEWFAARGGSPGDGLRLCSHVGCGRPETRRHEFRRCS 332

Query: 61  VCGAV 66
           VCGAV
Sbjct: 333 VCGAV 337

[Close]

BLAST of MELO3C031855.2 vs. NCBI nr
Match: XP_023516587.1 (F-box protein At1g67340-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.9 bits (315), Expect = 5.5e-26
Identity = 57/65 (87.69%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCNIPAPEAH ASQFLA+WF ARGGS G+GLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 295 CPLLSDFGCNIPAPEAHPASQFLAEWFAARGGSPGDGLRLCSHVGCGRPETRRHEFRRCS 354

Query: 61  VCGAV 66
           VCGAV
Sbjct: 355 VCGAV 359

[Close]

BLAST of MELO3C031855.2 vs. NCBI nr
Match: PON50665.1 (Eukaryotic elongation factor 2 kinase [Parasponia andersonii])

HSP 1 Score: 125.2 bits (313), Expect = 9.4e-26
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCN+PAPEAH AS+F+A+WF ARGGS GNGLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 283 CPLLSDFGCNVPAPEAHPASRFMAEWFAARGGSPGNGLRLCSHVGCGRPETRRHEFRRCS 342

Query: 61  VCGAV 66
           VCGAV
Sbjct: 343 VCGAV 347

[Close]

BLAST of MELO3C031855.2 vs. TAIR10
Match: AT1G67340.1 (HCP-like superfamily protein with MYND-type zinc finger)

HSP 1 Score: 109.4 bits (272), Expect = 9.7e-25
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSL-GNGLRLCSHVGCGRSETRRHEFRRC 60
           C LLS+FGCN+PAPE H A++FLA WF  RGG   G+GLRLCSH GCGR ETR+HEFRRC
Sbjct: 261 CPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRC 320

Query: 61  SVCGAV 66
           SVCG V
Sbjct: 321 SVCGVV 326

[Close]

BLAST of MELO3C031855.2 vs. TAIR10
Match: AT5G50450.1 (HCP-like superfamily protein with MYND-type zinc finger)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-14
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 11  IPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCSVCGAV 66
           +P  E H  ++FL +WF +    L  GLR+CSH GCGR ETR HEFRRCSVCG V
Sbjct: 231 VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKV 285

[Close]

BLAST of MELO3C031855.2 vs. Swiss-Prot
Match: sp|Q9FYF9|FB76_ARATH (F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-23
Identity = 48/66 (72.73%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSL-GNGLRLCSHVGCGRSETRRHEFRRC 60
           C LLS+FGCN+PAPE H A++FLA WF  RGG   G+GLRLCSH GCGR ETR+HEFRRC
Sbjct: 261 CPLLSDFGCNVPAPETHPANRFLADWFAVRGGDCPGDGLRLCSHAGCGRPETRKHEFRRC 320

Query: 61  SVCGAV 66
           SVCG V
Sbjct: 321 SVCGVV 326

[Close]

BLAST of MELO3C031855.2 vs. Swiss-Prot
Match: sp|Q9FK27|FB342_ARATH (F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.1e-13
Identity = 32/55 (58.18%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 11  IPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCSVCGAV 66
           +P  E H  ++FL +WF +    L  GLR+CSH GCGR ETR HEFRRCSVCG V
Sbjct: 231 VPVQEIHPVNRFLKEWFSSGRVDLAEGLRMCSHGGCGRPETRAHEFRRCSVCGKV 285

[Close]

BLAST of MELO3C031855.2 vs. TrEMBL
Match: tr|A0A1S3BE37|A0A1S3BE37_CUCME (F-box protein At1g67340 OS=Cucumis melo OX=3656 GN=LOC103488887 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCNIPAPEAH ASQFLA+WFEARGGS GNGLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 273 CPLLSDFGCNIPAPEAHPASQFLAEWFEARGGSPGNGLRLCSHVGCGRPETRRHEFRRCS 332

Query: 61  VCGAV 66
           VCGAV
Sbjct: 333 VCGAV 337

[Close]

BLAST of MELO3C031855.2 vs. TrEMBL
Match: tr|A0A0A0KTC5|A0A0A0KTC5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589890 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.9e-27
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCNIPAPEAH ASQFLA+WFEARGGS GNGLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 273 CPLLSDFGCNIPAPEAHPASQFLAEWFEARGGSPGNGLRLCSHVGCGRPETRRHEFRRCS 332

Query: 61  VCGAV 66
           VCGAV
Sbjct: 333 VCGAV 337

[Close]

BLAST of MELO3C031855.2 vs. TrEMBL
Match: tr|A0A2P5BPE9|A0A2P5BPE9_PARAD (Eukaryotic elongation factor 2 kinase OS=Parasponia andersonii OX=3476 GN=PanWU01x14_221980 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-26
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCN+PAPEAH AS+F+A+WF ARGGS GNGLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 283 CPLLSDFGCNVPAPEAHPASRFMAEWFAARGGSPGNGLRLCSHVGCGRPETRRHEFRRCS 342

Query: 61  VCGAV 66
           VCGAV
Sbjct: 343 VCGAV 347

[Close]

BLAST of MELO3C031855.2 vs. TrEMBL
Match: tr|A0A2P5EBD3|A0A2P5EBD3_9ROSA (Eukaryotic elongation factor 2 kinase OS=Trema orientalis OX=63057 GN=TorRG33x02_214350 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.0e-25
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCN+PAPEAH AS+F+A+WF ARGG  GNGLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 288 CPLLSDFGCNVPAPEAHPASRFMAEWFAARGGWPGNGLRLCSHVGCGRPETRRHEFRRCS 347

Query: 61  VCGAV 66
           VCGAV
Sbjct: 348 VCGAV 352

[Close]

BLAST of MELO3C031855.2 vs. TrEMBL
Match: tr|V4TN74|V4TN74_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10031699mg PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.9e-25
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1   CLLLSNFGCNIPAPEAHLASQFLAKWFEARGGSLGNGLRLCSHVGCGRSETRRHEFRRCS 60
           C LLS+FGCN+PAPEAH AS+FLA+WF ARGG+ G GLRLCSHVGCGR ETRRHEFRRCS
Sbjct: 290 CPLLSDFGCNVPAPEAHPASRFLAEWFAARGGTPGPGLRLCSHVGCGRPETRRHEFRRCS 349

Query: 61  VCGAV 66
           VCGAV
Sbjct: 350 VCGAV 354

The following BLAST results are available for this feature:

BLAST of MELO3C031855.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135325.1	2.9e-27	90.77	PREDICTED: F-box protein At1g67340 [Cucumis sativus] >KGN51672.1 hypothetical pr...	[more]
XP_008446037.1	2.9e-27	90.77	PREDICTED: F-box protein At1g67340 [Cucumis melo]	[more]
XP_022998094.1	5.5e-26	87.69	F-box protein At1g67340 [Cucurbita maxima]	[more]
XP_023516587.1	5.5e-26	87.69	F-box protein At1g67340-like [Cucurbita pepo subsp. pepo]	[more]
PON50665.1	9.4e-26	84.62	Eukaryotic elongation factor 2 kinase [Parasponia andersonii]	[more]

BLAST of MELO3C031855.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67340.1	9.7e-25	72.73	HCP-like superfamily protein with MYND-type zinc finger	[more]
AT5G50450.1	1.2e-14	58.18	HCP-like superfamily protein with MYND-type zinc finger	[more]

BLAST of MELO3C031855.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FYF9\|FB76_ARATH	1.8e-23	72.73	F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1	[more]
sp\|Q9FK27\|FB342_ARATH	2.1e-13	58.18	F-box protein At5g50450 OS=Arabidopsis thaliana OX=3702 GN=At5g50450 PE=2 SV=1	[more]

BLAST of MELO3C031855.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BE37\|A0A1S3BE37_CUCME	1.9e-27	90.77	F-box protein At1g67340 OS=Cucumis melo OX=3656 GN=LOC103488887 PE=4 SV=1	[more]
tr\|A0A0A0KTC5\|A0A0A0KTC5_CUCSA	1.9e-27	90.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G589890 PE=4 SV=1	[more]
tr\|A0A2P5BPE9\|A0A2P5BPE9_PARAD	6.2e-26	84.62	Eukaryotic elongation factor 2 kinase OS=Parasponia andersonii OX=3476 GN=PanWU0...	[more]
tr\|A0A2P5EBD3\|A0A2P5EBD3_9ROSA	4.0e-25	83.08	Eukaryotic elongation factor 2 kinase OS=Trema orientalis OX=63057 GN=TorRG33x02...	[more]
tr\|V4TN74\|V4TN74_9ROSI	6.9e-25	83.08	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10031699mg PE=4 ...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031855.2.1	MELO3C031855.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12298:SF37	SUBFAMILY NOT NAMED	coord: 1..66
None	No IPR available	PANTHER	PTHR12298	PCDC2 PROGRAMMED CELL DEATH PROTEIN 2 -RELATED	coord: 1..66

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031855.2	Wax gourd	medwgoB504
MELO3C031855.2	Wax gourd	medwgoB568
MELO3C031855.2	Cucumber (Gy14) v2	cgybmedB203
MELO3C031855.2	Cucumber (Gy14) v1	cgymedB075
MELO3C031855.2	Cucurbita maxima (Rimu)	cmamedB345
MELO3C031855.2	Cucurbita maxima (Rimu)	cmamedB778
MELO3C031855.2	Cucurbita moschata (Rifu)	cmomedB024
MELO3C031855.2	Cucurbita moschata (Rifu)	cmomedB325
MELO3C031855.2	Cucurbita moschata (Rifu)	cmomedB775
MELO3C031855.2	Cucurbita pepo (Zucchini)	cpemedB015
MELO3C031855.2	Cucurbita pepo (Zucchini)	cpemedB482
MELO3C031855.2	Wild cucumber (PI 183967)	cpimedB226
MELO3C031855.2	Cucumber (Chinese Long) v2	cumedB225
MELO3C031855.2	Melon (DHL92) v3.6.1	medmedB136
MELO3C031855.2	Bottle gourd (USVL1VR-Ls)	lsimedB329
MELO3C031855.2	Bottle gourd (USVL1VR-Ls)	lsimedB387
MELO3C031855.2	Watermelon (Charleston Gray)	medwcgB402
MELO3C031855.2	Watermelon (Charleston Gray)	medwcgB434
MELO3C031855.2	Watermelon (97103) v1	medwmB437
MELO3C031855.2	Watermelon (97103) v1	medwmB464
MELO3C031855.2	Silver-seed gourd	carmedB0683
MELO3C031855.2	Silver-seed gourd	carmedB0802
MELO3C031855.2	Silver-seed gourd	carmedB0901
MELO3C031855.2	Cucumber (Chinese Long) v3	cucmedB232
MELO3C031855.2	Watermelon (97103) v2	medwmbB416