MELO3C031790.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031790.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionserine/threonine-protein phosphatase 7 long form homolog
Locationchr06 : 19847266 .. 19848085 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGTTCATTTAGTGATGCGATGGCTAAATCATAGAAGGTTTACTGCTAAGGGACCTCCAATTGAGCAATTTAATATGGATATAACTCAAGAATACATCCATTGGTACAAAAACATTACTAGGCCCTATATCACCCAATCAGGAGCTGCTGTAGGTCATCTGGTATACATTTAAATATTGTATAGTTGTTTTTAGTAAAAATTCATTTTGGATACTTTCTAATTCATTTTAATATTTTACAGAGATCGAACAATAGTAGACGTCGAAATGTTGCAGATGATCCACAACAGGTTTTAAGTATATGCAACGATGACGAGCAGTACATGGAGAACATTCACTATATGTATAATGTATCTATTGTACCTGCTCCAGTTTAGAGGAGACGTGCTTTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGAAAGAAGTGTCTCTTGTTACACAGACACAAAGCGAGCATGGTTACGTTAGTCCATCAATGATGATACCGGCATTTGGAATGACATATTATGATTCAGGATTCCGTCAATCCTCAGACTTTGGAATATAATATTATAATTAAGAGGCGGGTCTATCATCATCAAACTTTGGGCAACAATACTATGATTTAGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGAGTGTAGTCGTGGAAAACATAATGAATATTTGTACTACAAAGTGCTTGCAGCGGTACTTGAGCAATCAAATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTTATAGTCGACGACGACAACCAGCTGAAAATTGTCGACATC

mRNA sequence

AATTGTTCATTTAGTGATGCGATGGCTAAATCATAGAAGGTTTACTGCTAAGGGACCTCCAATTGAGCAATTTAATATGGATATAACTCAAGAATACATCCATTGGTACAAAAACATTACTAGGCCCTATATCACCCAATCAGGAGCTGCTGTAGGTCATCTGAGATCGAACAATAGTAGACGTCGAAATGTTGCAGATGATCCACAACAGGTTTTAAGTATATGCAACGATGACGAGCAGTACATGGAGAACATTCACTATATGTATAATGTATCTATTGTACCTGCTCCAGTTTAGAGGAGACGTGCTTTAGTGCAAGAGCTCGATCAATTGGAAGAAGTTGACCAACACGTGAAAGAAGTGTCTCTTGTTACACAGACACAAAGCGAGCATGGTTACGTTAGTCCATCAATGATGATACCGGCATTTGGAATGACATATTATGATTCAGGATTCCGTCAATCCTCAGACTTTGGAATATAATATTATAATTAAGAGGCGGGGAGCGATCCATCGTCTTCATACATGCATGGTCACGAGTGTAGTCGTGGAAAACATAATGAATATTTGTACTACAAAGTGCTTGCAGCGGTACTTGAGCAATCAAATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAACAACAAAGAGTTTATAGTCGACGACGACAACCAGCTGAAAATTGTCGACATC

Coding sequence (CDS)

ATGCGATGGCTAAATCATAGAAGGTTTACTGCTAAGGGACCTCCAATTGAGCAATTTAATATGGATATAACTCAAGAATACATCCATTGGTACAAAAACATTACTAGGCCCTATATCACCCAATCAGGAGCTGCTGTAGGTCATCTGAGATCGAACAATAGTAGACGTCGAAATGTTGCAGATGATCCACAACAGGTTTTAAGTATATGCAACGATGACGAGCAGTACATGGAGAACATTCACTATATGTATAATGTATCTATTGTACCTGCTCCAGTTTAG

Protein sequence

MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHLRSNNSRRRNVADDPQQVLSICNDDEQYMENIHYMYNVSIVPAPV
Homology
[Close]
BLAST of MELO3C031790.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 2.7e-38
Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 1  MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHLRSNNSRRRNVA 60
          MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HLRSNN+R RN+A
Sbjct: 1  MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61 DDPQQVLSICNDDEQYMENIHYMYNVSIVPAPV 94
          DDPQQVL+ICND+EQYMENIHYMY+V IVPAPV
Sbjct: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPV 93

[Close]
BLAST of MELO3C031790.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 9.7e-28
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 21 MDITQEYIHWYKNITRPYITQSGAAVGHLRSNNSRRRNVADDPQQVLSICNDDEQYMENI 80
          MD+TQEYIHWYKNI++ YITQ GAA+ HLRSNN+R RN+ADDPQQVL+ICND+EQYMENI
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 81 HYMYNVSIVPAPV 94
          HYMY+V IVPAPV
Sbjct: 61 HYMYDVPIVPAPV 73

[Close]
BLAST of MELO3C031790.2 vs. NCBI nr
Match: XP_008463092.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHLRSNNSRRRNVA 60
           MRW N RRFTA GPPIEQF+MD+TQEYI+WYKNI++ YITQ GAA+ HLRSNN R RNVA
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 151

Query: 61  DDPQQVLSICNDDE 75
           DDPQQVL+ICND+E
Sbjct: 152 DDPQQVLNICNDNE 165

[Close]
BLAST of MELO3C031790.2 vs. NCBI nr
Match: XP_008461670.1 (PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 50  RSNNSRRRNVADDPQQVLSICNDDEQYMENIHYMYNVSIVPAPV 94
           RS N R +NVADDPQQVL+ICND+EQYMENIHYMYNV IVPA V
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALV 205

[Close]
BLAST of MELO3C031790.2 vs. NCBI nr
Match: XP_008461671.1 (PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.4e-10
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 50  RSNNSRRRNVADDPQQVLSICNDDEQYMENIHYMYNVSIVPAPV 94
           RS N R +NVADDPQQVL+ICND+EQYMENIHYMYNV IVPA V
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALV 198

[Close]
BLAST of MELO3C031790.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.8e-38
Identity = 75/93 (80.65%), Postives = 85/93 (91.40%), Query Frame = 0 

Query: 1  MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHLRSNNSRRRNVA 60
          MRW N RRFTA GPPIEQF+MD+TQEYIHWYKNI++ YITQ GAA+ HLRSNN+R RN+A
Sbjct: 1  MRWHNRRRFTATGPPIEQFDMDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIA 60

Query: 61 DDPQQVLSICNDDEQYMENIHYMYNVSIVPAPV 94
          DDPQQVL+ICND+EQYMENIHYMY+V IVPAPV
Sbjct: 61 DDPQQVLNICNDNEQYMENIHYMYDVPIVPAPV 93

[Close]
BLAST of MELO3C031790.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.4e-28
Identity = 59/73 (80.82%), Postives = 68/73 (93.15%), Query Frame = 0 

Query: 21 MDITQEYIHWYKNITRPYITQSGAAVGHLRSNNSRRRNVADDPQQVLSICNDDEQYMENI 80
          MD+TQEYIHWYKNI++ YITQ GAA+ HLRSNN+R RN+ADDPQQVL+ICND+EQYMENI
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHLRSNNTRLRNIADDPQQVLNICNDNEQYMENI 60

Query: 81 HYMYNVSIVPAPV 94
          HYMY+V IVPAPV
Sbjct: 61 HYMYDVPIVPAPV 73

[Close]
BLAST of MELO3C031790.2 vs. TrEMBL
Match: tr|A0A1S3CIU3|A0A1S3CIU3_CUCME (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103501325 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.3e-27
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 0 

Query: 1   MRWLNHRRFTAKGPPIEQFNMDITQEYIHWYKNITRPYITQSGAAVGHLRSNNSRRRNVA 60
           MRW N RRFTA GPPIEQF+MD+TQEYI+WYKNI++ YITQ GAA+ HLRSNN R RNVA
Sbjct: 92  MRWHNRRRFTATGPPIEQFDMDVTQEYINWYKNISKLYITQPGAAMSHLRSNNIRLRNVA 151

Query: 61  DDPQQVLSICNDDE 75
           DDPQQVL+ICND+E
Sbjct: 152 DDPQQVLNICNDNE 165

[Close]
BLAST of MELO3C031790.2 vs. TrEMBL
Match: tr|A0A1S3CF98|A0A1S3CF98_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 50  RSNNSRRRNVADDPQQVLSICNDDEQYMENIHYMYNVSIVPAPV 94
           RS N R +NVADDPQQVL+ICND+EQYMENIHYMYNV IVPA V
Sbjct: 155 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALV 198

[Close]
BLAST of MELO3C031790.2 vs. TrEMBL
Match: tr|A0A1S3CF42|A0A1S3CF42_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.3e-11
Identity = 36/44 (81.82%), Postives = 39/44 (88.64%), Query Frame = 0 

Query: 50  RSNNSRRRNVADDPQQVLSICNDDEQYMENIHYMYNVSIVPAPV 94
           RS N R +NVADDPQQVL+ICND+EQYMENIHYMYNV IVPA V
Sbjct: 162 RSKNIRLQNVADDPQQVLNICNDNEQYMENIHYMYNVLIVPALV 205

The following BLAST results are available for this feature:
BLAST of MELO3C031790.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449513.12.7e-3880.65PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_016900498.19.7e-2880.82PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008463092.11.4e-2678.38PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
XP_008461670.11.4e-1081.82PREDICTED: CASP-like protein 4C1 isoform X1 [Cucumis melo][more]
XP_008461671.11.4e-1081.82PREDICTED: CASP-like protein 4C1 isoform X2 [Cucumis melo][more]
BLAST of MELO3C031790.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031790.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031790.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME1.8e-3880.65mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME6.4e-2880.82GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
tr|A0A1S3CIU3|A0A1S3CIU3_CUCME9.3e-2778.38serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
tr|A0A1S3CF98|A0A1S3CF98_CUCME9.3e-1181.82CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
tr|A0A1S3CF42|A0A1S3CF42_CUCME9.3e-1181.82CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500218 PE=3 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031790.2.1MELO3C031790.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031790.2Watermelon (97103) v2medwmbB418
MELO3C031790.2Wax gourdmedwgoB511
MELO3C031790.2Cucumber (Gy14) v2cgybmedB209
MELO3C031790.2Cucumber (Gy14) v1cgymedB004
MELO3C031790.2Cucumber (Gy14) v1cgymedB434
MELO3C031790.2Cucurbita maxima (Rimu)cmamedB349
MELO3C031790.2Cucurbita maxima (Rimu)cmamedB781
MELO3C031790.2Cucurbita moschata (Rifu)cmomedB335
MELO3C031790.2Cucurbita moschata (Rifu)cmomedB778
MELO3C031790.2Cucurbita pepo (Zucchini)cpemedB237
MELO3C031790.2Cucurbita pepo (Zucchini)cpemedB485
MELO3C031790.2Wild cucumber (PI 183967)cpimedB229
MELO3C031790.2Wild cucumber (PI 183967)cpimedB232
MELO3C031790.2Cucumber (Chinese Long) v2cumedB231
MELO3C031790.2Bottle gourd (USVL1VR-Ls)lsimedB390
MELO3C031790.2Watermelon (Charleston Gray)medwcgB405
MELO3C031790.2Watermelon (97103) v1medwmB441
MELO3C031790.2Silver-seed gourdcarmedB0929
MELO3C031790.2Silver-seed gourdcarmedB1002
MELO3C031790.2Cucumber (Chinese Long) v3cucmedB239