MELO3C031770.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031770.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Bx9
Location	chr06 : 5897155 .. 5898795 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCATGGACAACAGTACATTTTGAACTGGTTAACTGAACCAACTAAGCGCTCTCATCAGATGAATTCTGTTGCTGCTGAGGTCCTTGGTAAATTCACGCGTGCTTTTTGTAATGAACACTTGGCTACGTGTACTCATCTTAAAGGAATGGAGCACTTATATGTGAAGAGGTATTGTTTCAAATGGAAAAACATTGATATCGTAAGTATGTTTTGTGATCTATTTTATTATTATTATGAGGTAAATGCTTGTATATCCTAAAACCACAATCAAGGCTCAGTACATATTATGGTTAACAAAGAAAATCAACTATATGATCATTCGTAGATACTCTGCTTATGTCCAAATATCTTTGCTGCAACTAGCCTGAGTTCTAAAAGTGAGACTTCACCATTCAATTATTTCAACTTCATTTGCCACTTTGCTTGTATTTGATCCTTTGTTGATCTGCCTTTTCTTCTTCTATGTGATATGATATGATGCTTGTGTGTGACTTGTGAGTACATAAATAATAGAAACTTGGAACAATGGCTTCAAACAATTAGTGGTCAGAAAATGTCTCAACTTTTGATAAACTTGGAATACTGGAAATTTCTGATCCTTTTAGGTTCATATGCTCATATGAATTATGCATACATTAAGATCGACCTGTTGTGATTTTCAAGGACAAGAAGTTGAACAGCTCTGTAGGTAATTATCATTTGAGTTATATTGAAGTTATTTATGGAGAGACTTTAAAACTTGCATAGTGTCCTAATTAATATATTTAATGGGTAGATAATTTTCTGACATAAAATGGTTTATGTCTCCATTTTGTCGTGCTGCTATGATTGTAGCGTGCAGTCATCCTGAGGCAATAGGAATAGAGCCGTGGCTTATTCAGTGAACAATCCATTCACTTTCAGGTATAAAACATGGCATGGGACATCTATTGGCGGCAGGAATTTGACATTTGAGCAAGAGGTCAGACCAATCTAATTCATACTAGTCTAATAAGAATGAATCTTCTTGAATGAATTGATCTATTGTTGTATGTCCTATTCGAGCAAGAGGTCAGATCAATCTTAGAAAGACACATACGTAGGAAGACATTTATCTTCTCAATAGTAATACAACCTGAGATACAGGCATTACTATTGGCTTGCTGATGTTATTTATAAATATAGCTTTAGTCCTAATGATTGTTGCATAGTACAATAAAGAAGCTGACCATTCTTTAATTAGTTTGCTTCATCACAAACTTTATTTACAAAAGCCTTAAGATTCACAAAAGAAGAACCATTCGCAGCCTCCATTGCTAAGCGTTGCCATTTCGTAGCATTGATTCTCAGTTGCTTTCCTTTTCCTTTGCTATCGTCTTCCATATCCATAATCATTCTCAAGCATCTTGTAATCTCCTTTCTTTCTACCATTCCTTCACCATCACTACTCTTCTTCACTCTCACACCAATCTTCCATACATCCTCCATCATCTTGGCATTGGTGGCTTGGTCTGCCCACAACAGCCATGCCACTGTCGGCACTCCAACCGCTACACACTCGATCGTGAAATTCCATCCACAGTGTGTTACAAAGCAACCCACTGATCGGTGGCTCAAGATCTCTACCTGTGAGCACCATGGCACTATCTTCCCTTGA

mRNA sequence

ATGAAGCATGGACAACAGTACATTTTGAACTGGTTAACTGAACCAACTAAGCGCTCTCATCAGATGAATTCTGTTGCTGCTGAGGTCCTTGGTAAATTCACGCGTGCTTTTTGTAATGAACACTTGGCTACGTGTACTCATCTTAAAGGAATGGAGCACTTATATGTGAAGAGGTATAAAACATGGCATGGGACATCTATTGGCGGCAGGAATTTGACATTTGAGCAAGAGTTTGCTTCATCACAAACTTTATTTACAAAAGCCTTAAGATTCACAAAAGAAGAACCATTCGCAGCCTCCATTGCTAAGCGTTGCCATTTCGTAGCATTGATTCTCAGTTGCTTTCCTTTTCCTTTGCTATCGTCTTCCATATCCATAATCATTCTCAAGCATCTTGTAATCTCCTTTCTTTCTACCATTCCTTCACCATCACTACTCTTCTTCACTCTCACACCAATCTTCCATACATCCTCCATCATCTTGGCATTGGTGGCTTGGTCTGCCCACAACAGCCATGCCACTGTCGGCACTCCAACCGCTACACACTCGATCGTGAAATTCCATCCACAGTGTGTTACAAAGCAACCCACTGATCGGTGGCTCAAGATCTCTACCTGTGAGCACCATGGCACTATCTTCCCTTGA

Coding sequence (CDS)

ATGAAGCATGGACAACAGTACATTTTGAACTGGTTAACTGAACCAACTAAGCGCTCTCATCAGATGAATTCTGTTGCTGCTGAGGTCCTTGGTAAATTCACGCGTGCTTTTTGTAATGAACACTTGGCTACGTGTACTCATCTTAAAGGAATGGAGCACTTATATGTGAAGAGGTATAAAACATGGCATGGGACATCTATTGGCGGCAGGAATTTGACATTTGAGCAAGAGTTTGCTTCATCACAAACTTTATTTACAAAAGCCTTAAGATTCACAAAAGAAGAACCATTCGCAGCCTCCATTGCTAAGCGTTGCCATTTCGTAGCATTGATTCTCAGTTGCTTTCCTTTTCCTTTGCTATCGTCTTCCATATCCATAATCATTCTCAAGCATCTTGTAATCTCCTTTCTTTCTACCATTCCTTCACCATCACTACTCTTCTTCACTCTCACACCAATCTTCCATACATCCTCCATCATCTTGGCATTGGTGGCTTGGTCTGCCCACAACAGCCATGCCACTGTCGGCACTCCAACCGCTACACACTCGATCGTGAAATTCCATCCACAGTGTGTTACAAAGCAACCCACTGATCGGTGGCTCAAGATCTCTACCTGTGAGCACCATGGCACTATCTTCCCTTGA

Protein sequence

MKHGQQYILNWLTEPTKRSHQMNSVAAEVLGKFTRAFCNEHLATCTHLKGMEHLYVKRYKTWHGTSIGGRNLTFEQEFASSQTLFTKALRFTKEEPFAASIAKRCHFVALILSCFPFPLLSSSISIIILKHLVISFLSTIPSPSLLFFTLTPIFHTSSIILALVAWSAHNSHATVGTPTATHSIVKFHPQCVTKQPTDRWLKISTCEHHGTIFP

Homology

[Close]

BLAST of MELO3C031770.2 vs. NCBI nr
Match: GAV90605.1 (hypothetical protein CFOL_v3_34014 [Cephalotus follicularis])

HSP 1 Score: 80.5 bits (197), Expect = 7.7e-12
Identity = 56/117 (47.86%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 99  ASIAKRCHFVAL-ILSCFPFPLLSSSISIIILKHLVISFLSTIPSPSLLFFTLTPIFHTS 158
           AS A   H V L ++S   FP      SI   KH++ S L TIP  S   FTLTP    S
Sbjct: 12  ASFANLLHLVELFLISWLLFP------SITCFKHIINSSLLTIPFSS--SFTLTPTPQIS 71

Query: 159 SIILALVAWSAHNSHATVGTPTATHSIVKFHPQCVTKQPTDRWLKISTCEHHGTIFP 215
           SI  A   WSAH    T+GTP  + S V+FHPQCVTKQP     +IS+C HH TI P
Sbjct: 72  SINFAFGNWSAHCGKPTIGTPRLSPSSVEFHPQCVTKQPMALCARISSCLHHVTISP 120

[Close]

BLAST of MELO3C031770.2 vs. NCBI nr
Match: BAT08986.1 (Os09g0518266 [Oryza sativa Japonica Group])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 49/100 (49.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 115 FPFPLLSSSISIIILKHLVISFLSTIPSPSLLFFTLTPIFHTSSIILALVAWSAHNSHAT 174
           F    L  S SI  L HL  S   T PSPS    T TP  HTSS+ LA + WS H   AT
Sbjct: 13  FSMNSLLLSPSITSLTHLSNSSFLTTPSPS--GRTRTPTRHTSSMYLAFIVWSDHCGTAT 72

Query: 175 VGTPTATHSIVKFHPQCVTKQPTDRWLKISTCEHHGTIFP 215
           +GTP    S+V+FHPQCVTK PT      S+C HH T+ P
Sbjct: 73  IGTPALNPSVVEFHPQCVTKHPTAGCASTSSCGHHVTMSP 110

[Close]

BLAST of MELO3C031770.2 vs. NCBI nr
Match: PON46705.1 (hypothetical protein PanWU01x14_250010 [Parasponia andersonii])

HSP 1 Score: 67.0 bits (162), Expect = 8.8e-08
Identity = 43/81 (53.09%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 134 ISFLSTIPSPSLLFFTLTPIFHTSSIILALVAWSAHNSHATVGTPTATHSIVKFHPQCVT 193
           IS L TIP  S   FTLTP FH SS  LA V WS H    T+GT     SIV+FHPQCV 
Sbjct: 5   ISSLPTIPLSSST-FTLTPTFHKSSTSLASVGWSVHCGIPTIGTAKLRASIVEFHPQCVK 64

Query: 194 KQPTDRWLKISTCEHHGTIFP 215
           K P     +IST   H TI P
Sbjct: 65  KHPIAGCDRISTWGPHFTINP 84

[Close]

BLAST of MELO3C031770.2 vs. NCBI nr
Match: GAV69189.1 (hypothetical protein CFOL_v3_12690, partial [Cephalotus follicularis])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 49/114 (42.98%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 94  EEPFAASIAKRCHFVALILSCFPFPLLSSSISIIILKHLVISFLSTIPSPSLLF-FTLTP 153
           EEP +   +    F +L L+  P P   SS ++I+L  + IS L TIP    +F  T TP
Sbjct: 1   EEPPSLKASSALCFSSLTLALIPCP---SSSAMILLTVIFISSLPTIPFDGRIFDRTATP 60

Query: 154 IFHTSSIILALVAWSAHNSHATVGTPTATHSIVKFHPQCVTKQPTDRWLKISTC 207
               SS    L   SA++ HA +GTP  T S  +FHPQC    PTD WLKISTC
Sbjct: 61  SSSVSSAAFNLC--SAYSGHAIIGTPFVTLSSAEFHPQCDKNPPTDGWLKISTC 109

[Close]

BLAST of MELO3C031770.2 vs. NCBI nr
Match: PON50571.1 (hypothetical protein TorRG33x02_313610 [Trema orientalis])

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 42/81 (51.85%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 134 ISFLSTIPSPSLLFFTLTPIFHTSSIILALVAWSAHNSHATVGTPTATHSIVKFHPQCVT 193
           IS L TIP  S   FTL P FH SS  LA V WS H    T+GT   + SIV+FHPQCV 
Sbjct: 5   ISSLPTIPLSSST-FTLIPTFHKSSTSLASVGWSVHCGIPTIGTAKLSASIVEFHPQCVK 64

Query: 194 KQPTDRWLKISTCEHHGTIFP 215
           K P     +IST   H TI P
Sbjct: 65  KHPIAGCDRISTWGPHFTINP 84

[Close]

BLAST of MELO3C031770.2 vs. TrEMBL
Match: tr|A0A1Q3DDV3|A0A1Q3DDV3_CEPFO (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34014 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.1e-12
Identity = 56/117 (47.86%), Postives = 65/117 (55.56%), Query Frame = 0


Query: 99  ASIAKRCHFVAL-ILSCFPFPLLSSSISIIILKHLVISFLSTIPSPSLLFFTLTPIFHTS 158
           AS A   H V L ++S   FP      SI   KH++ S L TIP  S   FTLTP    S
Sbjct: 12  ASFANLLHLVELFLISWLLFP------SITCFKHIINSSLLTIPFSS--SFTLTPTPQIS 71

Query: 159 SIILALVAWSAHNSHATVGTPTATHSIVKFHPQCVTKQPTDRWLKISTCEHHGTIFP 215
           SI  A   WSAH    T+GTP  + S V+FHPQCVTKQP     +IS+C HH TI P
Sbjct: 72  SINFAFGNWSAHCGKPTIGTPRLSPSSVEFHPQCVTKQPMALCARISSCLHHVTISP 120

[Close]

BLAST of MELO3C031770.2 vs. TrEMBL
Match: tr|A0A0N7KR44|A0A0N7KR44_ORYSJ (Os09g0518266 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0518266 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 49/100 (49.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 115 FPFPLLSSSISIIILKHLVISFLSTIPSPSLLFFTLTPIFHTSSIILALVAWSAHNSHAT 174
           F    L  S SI  L HL  S   T PSPS    T TP  HTSS+ LA + WS H   AT
Sbjct: 13  FSMNSLLLSPSITSLTHLSNSSFLTTPSPS--GRTRTPTRHTSSMYLAFIVWSDHCGTAT 72

Query: 175 VGTPTATHSIVKFHPQCVTKQPTDRWLKISTCEHHGTIFP 215
           +GTP    S+V+FHPQCVTK PT      S+C HH T+ P
Sbjct: 73  IGTPALNPSVVEFHPQCVTKHPTAGCASTSSCGHHVTMSP 110

[Close]

BLAST of MELO3C031770.2 vs. TrEMBL
Match: tr|A0A0E0IMG4|A0A0E0IMG4_ORYNI (Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 51/113 (45.13%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 106 HFVALILSCFPFPLLSSSI----SIIILKHLVISFLSTIPSPSLLFFTLTPIFHTSSIIL 165
           H   L  S  P     +S+    SI  L HL  S   T PSPS    T TP  HTSS+ L
Sbjct: 14  HMAFLAFSFQPLAFSMNSLLLSPSITSLTHLSNSSFLTTPSPS--GRTRTPTRHTSSMYL 73

Query: 166 ALVAWSAHNSHATVGTPTATHSIVKFHPQCVTKQPTDRWLKISTCEHHGTIFP 215
           A + WS H   AT+GTP    S+V+FHPQCVTK PT      S+C HH T+ P
Sbjct: 74  AFIVWSDHCGTATIGTPALNPSVVEFHPQCVTKHPTAGCASTSSCGHHVTMSP 124

[Close]

BLAST of MELO3C031770.2 vs. TrEMBL
Match: tr|A0A0A9IJF2|A0A0A9IJF2_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 35/66 (53.03%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 149 TLTPIFHTSSIILALVAWSAHNSHATVGTPTATHSIVKFHPQCVTKQPTDRWLKISTCEH 208
           T TP  HTSS  +A V WS H   AT+G PT   S+ +FHPQCV K PT R    S C H
Sbjct: 19  TRTPTRHTSSTYMAFVGWSVHCGSATMGRPTTMASVTEFHPQCVRKHPTARCTSTSICGH 78

Query: 209 HGTIFP 215
           HGT  P
Sbjct: 79  HGTTIP 84

[Close]

BLAST of MELO3C031770.2 vs. TrEMBL
Match: tr|J3KUN4|J3KUN4_ORYBR (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-09
Identity = 43/92 (46.74%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 123 SISIIILKHLVISFLSTIPSPSLLFFTLTPIFHTSSIILALVAWSAHNSHATVGTPTATH 182
           S SI     L  S   T PSPS    T TP  HTS + +A   WS H   AT+GTP  + 
Sbjct: 31  SPSITSRTRLANSSFLTTPSPS--GRTRTPTRHTSEMYMAFTVWSDHCGTATIGTPALSA 90

Query: 183 SIVKFHPQCVTKQPTDRWLKISTCEHHGTIFP 215
           S+V+FHPQCVTK PT      S+C HH T+ P
Sbjct: 91  SVVEFHPQCVTKHPTAGCASTSSCGHHATMSP 120

The following BLAST results are available for this feature:

BLAST of MELO3C031770.2 vs. NCBI nr


Match Name	E-value	Identity	Description
GAV90605.1	7.7e-12	47.86	hypothetical protein CFOL_v3_34014 [Cephalotus follicularis]	[more]
BAT08986.1	2.2e-11	49.00	Os09g0518266 [Oryza sativa Japonica Group]	[more]
PON46705.1	8.8e-08	53.09	hypothetical protein PanWU01x14_250010 [Parasponia andersonii]	[more]
GAV69189.1	1.2e-07	42.98	hypothetical protein CFOL_v3_12690, partial [Cephalotus follicularis]	[more]
PON50571.1	2.6e-07	51.85	hypothetical protein TorRG33x02_313610 [Trema orientalis]	[more]

BLAST of MELO3C031770.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031770.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031770.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1Q3DDV3\|A0A1Q3DDV3_CEPFO	5.1e-12	47.86	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_34014 PE=4...	[more]
tr\|A0A0N7KR44\|A0A0N7KR44_ORYSJ	1.5e-11	49.00	Os09g0518266 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0518266 PE...	[more]
tr\|A0A0E0IMG4\|A0A0E0IMG4_ORYNI	2.5e-11	45.13	Uncharacterized protein OS=Oryza nivara OX=4536 PE=4 SV=1	[more]
tr\|A0A0A9IJF2\|A0A0A9IJF2_ARUDO	1.6e-10	53.03	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]
tr\|J3KUN4\|J3KUN4_ORYBR	1.1e-09	46.74	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031770.2.1	MELO3C031770.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031770.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C031770.2	Cucumber (Gy14) v1	cgymedB432
MELO3C031770.2	Cucurbita maxima (Rimu)	cmamedB273
MELO3C031770.2	Cucurbita maxima (Rimu)	cmamedB863
MELO3C031770.2	Cucurbita moschata (Rifu)	cmomedB260
MELO3C031770.2	Cucurbita moschata (Rifu)	cmomedB857
MELO3C031770.2	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C031770.2	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C031770.2	Wild cucumber (PI 183967)	cpimedB224
MELO3C031770.2	Cucumber (Chinese Long) v2	cumedB223
MELO3C031770.2	Bottle gourd (USVL1VR-Ls)	lsimedB397
MELO3C031770.2	Watermelon (Charleston Gray)	medwcgB416
MELO3C031770.2	Watermelon (97103) v1	medwmB447
MELO3C031770.2	Silver-seed gourd	carmedB0706
MELO3C031770.2	Silver-seed gourd	carmedB1020
MELO3C031770.2	Cucumber (Chinese Long) v3	cucmedB230
MELO3C031770.2	Watermelon (97103) v2	medwmbB423
MELO3C031770.2	Wax gourd	medwgoB530