MELO3C031753.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031753.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionGATA zinc finger domain-containing protein 10-like isoform X2
Locationchr06 : 16147852 .. 16148055 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGTGTACCTATTATACTTGCTCCAGTTCAAAGGAGACGTGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTTGGCATTTGGAACGGGATATTATGATTCAGGAGTCAATCGTTAG

mRNA sequence

ATGTATGGTGTACCTATTATACTTGCTCCAGTTCAAAGGAGACGTGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTTGGCATTTGGAACGGGATATTATGATTCAGGAGTCAATCGTTAG

Coding sequence (CDS)

ATGTATGGTGTACCTATTATACTTGCTCCAGTTCAAAGGAGACGTGCTCTAGTGCAAGAGCTTGATGAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCTGTCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAGTGATGATGATGTTGGCATTTGGAACGGGATATTATGATTCAGGAGTCAATCGTTAG

Protein sequence

MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGYYDSGVNR
Homology
[Close]
BLAST of MELO3C031753.2 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 7.3e-09
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPV--TQTQSETGYVS 49
           MY VPI+ APVQRRR LVQE D+LEEVDQH EEVPP+  TQTQSE  YVS
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 132

[Close]
BLAST of MELO3C031753.2 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 7.3e-09
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPV--TQTQSETGYVS 49
           MY VPI+ APVQRRR LVQE D+LEEVDQH EEVPP+  TQTQSE  YVS
Sbjct: 63  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 112

[Close]
BLAST of MELO3C031753.2 vs. NCBI nr
Match: XP_011652738.1 (PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 22  DELEEVDQHVEEVPPVTQTQSETGYVSPVMMMLAFGTGYYDSGVNR 68
           D+LEEVDQ+VEEV PVTQTQSE GYVS VMMM  FGT YYD GV +
Sbjct: 169 DQLEEVDQNVEEVAPVTQTQSEHGYVSLVMMMPTFGTTYYDYGVGQ 214

[Close]
BLAST of MELO3C031753.2 vs. TrEMBL
Match: tr|A0A1S3BLK4|A0A1S3BLK4_CUCME (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-09
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPV--TQTQSETGYVS 49
           MY VPI+ APVQRRR LVQE D+LEEVDQH EEVPP+  TQTQSE  YVS
Sbjct: 83  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 132

[Close]
BLAST of MELO3C031753.2 vs. TrEMBL
Match: tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.8e-09
Identity = 38/50 (76.00%), Postives = 41/50 (82.00%), Query Frame = 0 

Query: 1   MYGVPIILAPVQRRRALVQELDELEEVDQHVEEVPPV--TQTQSETGYVS 49
           MY VPI+ APVQRRR LVQE D+LEEVDQH EEVPP+  TQTQSE  YVS
Sbjct: 63  MYDVPIVPAPVQRRRPLVQESDQLEEVDQHGEEVPPMTQTQTQSEHNYVS 112

The following BLAST results are available for this feature:
BLAST of MELO3C031753.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449513.17.3e-0976.00PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
XP_016900498.17.3e-0976.00PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_011652738.11.2e-0876.09PREDICTED: uncharacterized protein LOC105435074 [Cucumis sativus][more]
BLAST of MELO3C031753.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031753.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031753.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BLK4|A0A1S3BLK4_CUCME4.8e-0976.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
tr|A0A1S4DWZ9|A0A1S4DWZ9_CUCME4.8e-0976.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031753.2.1MELO3C031753.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031753.2Cucumber (Gy14) v2cgybmedB216
MELO3C031753.2Cucumber (Gy14) v1cgymedB606
MELO3C031753.2Cucurbita maxima (Rimu)cmamedB274
MELO3C031753.2Cucurbita maxima (Rimu)cmamedB496
MELO3C031753.2Cucurbita moschata (Rifu)cmomedB261
MELO3C031753.2Cucurbita moschata (Rifu)cmomedB483
MELO3C031753.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C031753.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C031753.2Wild cucumber (PI 183967)cpimedB240
MELO3C031753.2Cucumber (Chinese Long) v2cumedB239
MELO3C031753.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C031753.2Watermelon (Charleston Gray)medwcgB417
MELO3C031753.2Watermelon (97103) v1medwmB448
MELO3C031753.2Silver-seed gourdcarmedB0521
MELO3C031753.2Silver-seed gourdcarmedB0771
MELO3C031753.2Cucumber (Chinese Long) v3cucmedB247
MELO3C031753.2Watermelon (97103) v2medwmbB424
MELO3C031753.2Wax gourdmedwgoB541
MELO3C031753.2Wax gourdmedwgoB546