MELO3C031732.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031732.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	KH domain-containing protein family
Location	chr06 : 14454079 .. 14454412 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATATCTGGGGATCTTGTTGTTGTCAAGGAGGCTCTAGTACATATAGTAACCAGGCTTATAGCCAACCTTTTTTTTATAGAGAAGTCGCTCTCTCAGCTGTTCTGCTGTATCTTCCTCTAACAACTGATGGTTCAGATAGTCTAAGCTATGATGGTAAAGAAGGTAAAAGACATGGGCGTGGACATTCATATTCAAGTGGTTTTGGGGATTTCAATGATTTGGCTGGTGGTGATGGTTATGAAAGCTACAGTGGCTCACACGTACATATATTAACCTTGACATGTTTGATTATAGCAATGGGGACTGTGGTTCTATCTGCTTTTAGAAGTTAA

mRNA sequence

TGATATCTGGGGATCTTGTTGTTGTCAAGGAGGCTCTAGTACATATAGTAACCAGGCTTATAGCCAACCTTTTTTTTATAGAGAAGTCGCTCTCTCAGCTGTTCTGCTGTATCTTCCTCTAACAACTGATGGTTCAGATAGTCTAAGCTATGATGGTAAAGAAGGTAAAAGACATGGGCGTGGACATTCATATTCAAGTGGTTTTGGGGATTTCAATGATTTGGCTGGTGGTGATGGTTATGAAAGCTACAGTGGCTCACACGTACATATATTAACCTTGACATGTTTGATTATAGCAATGGGGACTGTGGTTCTATCTGCTTTTAGAAGTTAA

Coding sequence (CDS)

GATATCTGGGGATCTTGTTGTTGTCAAGGAGGCTCTAGTACATATAGTAACCAGGCTTATAGCCAACCTTTTTTTTATAGAGAAGTCGCTCTCTCAGCTGTTCTGCTGTATCTTCCTCTAACAACTGATGGTTCAGATAGTCTAAGCTATGATGGTAAAGAAGGTAAAAGACATGGGCGTGGACATTCATATTCAAGTGGTTTTGGGGATTTCAATGATTTGGCTGGTGGTGATGGTTATGAAAGCTACAGTGGCTCACACGTACATATATTAACCTTGACATGTTTGATTATAGCAATGGGGACTGTGGTTCTATCTGCTTTTAGAAGTTAA

Protein sequence

DIWGSCCCQGGSSTYSNQAYSQPFFYREVALSAVLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYESYSGSHVHILTLTCLIIAMGTVVLSAFRS

Homology

[Close]

BLAST of MELO3C031732.2 vs. NCBI nr
Match: XP_022958668.1 (KH domain-containing protein HEN4-like [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-16
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 84
           F RE ALSA   VL YLPL+ DGSDSL+YDG++ KRHGRGHSYSSG+G F DLA GDGY 
Sbjct: 445 FDREGALSAMLPVLPYLPLSADGSDSLNYDGRDSKRHGRGHSYSSGYGGFTDLAAGDGYG 504

Query: 85  SYSGSHV 89
           SYSGS +
Sbjct: 505 SYSGSQI 511

[Close]

BLAST of MELO3C031732.2 vs. NCBI nr
Match: XP_022133717.1 (KH domain-containing protein HEN4 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 3.8e-15
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 83
           F RE ALSA   VL YLPL+ DGSDSLSYDG++GKRHGRGHSYSSG+G FNDLA GDGY 
Sbjct: 447 FDREGALSAMLPVLPYLPLSADGSDSLSYDGRDGKRHGRGHSYSSGYGGFNDLAAGDGYG 506

[Close]

BLAST of MELO3C031732.2 vs. NCBI nr
Match: XP_022938745.1 (KH domain-containing protein HEN4-like [Cucurbita moschata] >XP_022938747.1 KH domain-containing protein HEN4-like [Cucurbita moschata] >XP_022938748.1 KH domain-containing protein HEN4-like [Cucurbita moschata])

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-14
Identity = 48/67 (71.64%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 84
           F RE ALSA   VL YLPL+ DGS+SL YDG+EGKRHGRGHSYSS +G F DLA GDGY 
Sbjct: 446 FDREGALSAVLPVLPYLPLSADGSESL-YDGREGKRHGRGHSYSSSYGGFTDLAAGDGYG 505

Query: 85  SYSGSHV 89
           SYSGS +
Sbjct: 506 SYSGSQI 511

[Close]

BLAST of MELO3C031732.2 vs. NCBI nr
Match: XP_016900407.1 (PREDICTED: uncharacterized protein LOC107990890, partial [Cucumis melo])

HSP 1 Score: 85.9 bits (211), Expect = 9.4e-14
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 84
           FYRE AL     VLLYLPL+ DGS+SLSYD +EGKRHGRGH YSSG+G FNDLA GD Y 
Sbjct: 79  FYREDALLVVLPVLLYLPLSADGSNSLSYDRREGKRHGRGHPYSSGYGGFNDLA-GDVYG 138

Query: 85  SYSG 86
           SYSG
Sbjct: 139 SYSG 141

[Close]

BLAST of MELO3C031732.2 vs. NCBI nr
Match: KYP64339.1 (KH domain-containing protein At4g18375 family [Cajanus cajan])

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 84
           F RE ALSA   VL YLP++ DGSD L+YDG++GK+HGRGHSYSSG+G  +DLA GD Y 
Sbjct: 444 FDREGALSAFLPVLPYLPVSADGSDGLNYDGRDGKKHGRGHSYSSGYGGSSDLAAGDIYG 503

Query: 85  SYSGSHVHILTLT 95
           SY GS V + + T
Sbjct: 504 SYGGSQVLLASQT 516

[Close]

BLAST of MELO3C031732.2 vs. TrEMBL
Match: tr|A0A1S4DWP9|A0A1S4DWP9_CUCME (uncharacterized protein LOC107990890 OS=Cucumis melo OX=3656 GN=LOC107990890 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 6.2e-14
Identity = 47/64 (73.44%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 84
           FYRE AL     VLLYLPL+ DGS+SLSYD +EGKRHGRGH YSSG+G FNDLA GD Y 
Sbjct: 79  FYREDALLVVLPVLLYLPLSADGSNSLSYDRREGKRHGRGHPYSSGYGGFNDLA-GDVYG 138

Query: 85  SYSG 86
           SYSG
Sbjct: 139 SYSG 141

[Close]

BLAST of MELO3C031732.2 vs. TrEMBL
Match: tr|A0A151TBB2|A0A151TBB2_CAJCA (KH domain-containing protein At4g18375 family OS=Cajanus cajan OX=3821 GN=KK1_018932 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-13
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 84
           F RE ALSA   VL YLP++ DGSD L+YDG++GK+HGRGHSYSSG+G  +DLA GD Y 
Sbjct: 444 FDREGALSAFLPVLPYLPVSADGSDGLNYDGRDGKKHGRGHSYSSGYGGSSDLAAGDIYG 503

Query: 85  SYSGSHVHILTLT 95
           SY GS V + + T
Sbjct: 504 SYGGSQVLLASQT 516

[Close]

BLAST of MELO3C031732.2 vs. TrEMBL
Match: tr|I1LWL4|I1LWL4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100784791 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGY 81
           F RE ALSA   VL YLP++ DGSD L+YDG++GKRHGRGHSYSSG+G  +DLA GD Y
Sbjct: 446 FDREGALSAFLPVLPYLPVSADGSDGLNYDGRDGKRHGRGHSYSSGYGGSSDLAAGDVY 504

[Close]

BLAST of MELO3C031732.2 vs. TrEMBL
Match: tr|V7BZ92|V7BZ92_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G030100g PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGYE 83
           F RE ALSA   V+ YLP++ DGSD L++DG++GKRHGRGHSYSSG+G  +DL GGD Y 
Sbjct: 446 FDREGALSAFLPVMPYLPVSADGSDGLNFDGRDGKRHGRGHSYSSGYGGSSDLTGGDFYG 505

[Close]

BLAST of MELO3C031732.2 vs. TrEMBL
Match: tr|I1N664|I1N664_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100804157 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-11
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 25  FYREVALSA---VLLYLPLTTDGSDSLSYDGKEGKRHGRGHSYSSGFGDFNDLAGGDGY 81
           F RE ALS+   VL YLP++ DGSD L+YDG++GKRHGRGHSYSSG+G  +DLA GD Y
Sbjct: 446 FDREGALSSFLPVLPYLPVSADGSDGLNYDGRDGKRHGRGHSYSSGYGGSSDLAAGDIY 504

The following BLAST results are available for this feature:

BLAST of MELO3C031732.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958668.1	3.5e-16	71.64	KH domain-containing protein HEN4-like [Cucurbita moschata]	[more]
XP_022133717.1	3.8e-15	77.05	KH domain-containing protein HEN4 [Momordica charantia]	[more]
XP_022938745.1	1.5e-14	71.64	KH domain-containing protein HEN4-like [Cucurbita moschata] >XP_022938747.1 KH d...	[more]
XP_016900407.1	9.4e-14	73.44	PREDICTED: uncharacterized protein LOC107990890, partial [Cucumis melo]	[more]
KYP64339.1	1.6e-13	61.64	KH domain-containing protein At4g18375 family [Cajanus cajan]	[more]

BLAST of MELO3C031732.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031732.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031732.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DWP9\|A0A1S4DWP9_CUCME	6.2e-14	73.44	uncharacterized protein LOC107990890 OS=Cucumis melo OX=3656 GN=LOC107990890 PE=...	[more]
tr\|A0A151TBB2\|A0A151TBB2_CAJCA	1.1e-13	61.64	KH domain-containing protein At4g18375 family OS=Cajanus cajan OX=3821 GN=KK1_01...	[more]
tr\|I1LWL4\|I1LWL4_SOYBN	2.2e-11	67.80	Uncharacterized protein OS=Glycine max OX=3847 GN=100784791 PE=4 SV=1	[more]
tr\|V7BZ92\|V7BZ92_PHAVU	3.8e-11	63.93	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G030100g PE=4 ...	[more]
tr\|I1N664\|I1N664_SOYBN	6.5e-11	66.10	Uncharacterized protein OS=Glycine max OX=3847 GN=100804157 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031732.2.1	MELO3C031732.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..63

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031732.2	Cucumber (Gy14) v1	cgymedB338
MELO3C031732.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C031732.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C031732.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C031732.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C031732.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C031732.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C031732.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031732.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031732.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031732.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031732.2	Watermelon (97103) v1	medwmB448
MELO3C031732.2	Silver-seed gourd	carmedB0185
MELO3C031732.2	Silver-seed gourd	carmedB0771
MELO3C031732.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031732.2	Cucumber (Chinese Long) v3	cucmedB247
MELO3C031732.2	Watermelon (97103) v2	medwmbB424
MELO3C031732.2	Wax gourd	medwgoB531
MELO3C031732.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031732.2	Cucumber (Gy14) v2	cgybmedB216
MELO3C031732.2	Cucumber (Gy14) v1	cgymedB144