MELO3C031723.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031723.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionF-box protein
Locationchr06 : 14176494 .. 14177364 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTGTTTTGGCTATCCTGCAGTTATAGTAGCCTTTAGTTCAATTCTAGTAGTTTATTTTCTTAGTAGTTTTGAATAACATTGTTGTTGATTTGGAATGACTATTATGCAGTTATAGTAGCCTTTTTTTTATTTTGAATTTGTTTGTATTTCTAAGGGTTTGAAAGGGTGGTAATAGGGTAGCTTGTAAGGTAGCATTGTTAGAACGGGTGGGTAGGATGCAAAGATTAAAATTGTTTGTGGTTAATTAGGTTGTGGTGACTATCTTGCAGTTATGATAGCCTCTATAGTTTGAAGTTAGTTTTAGTGAACAATTTTGGGAGATTGTATATTTAGGGGAGTAAGTTTAGGATATGAGAGGAAAATGATATGCTTCTAATCAGACCTATTTATGTTTTAGGGACTTAAAATGGACAAGGGTCGGATGAAACTTAGGAATAAGTTTTTTTTTTAGTATAGAGAGAGAATGGCTCAATTTCTAGACGTTGTCAAGGTTCACGTTGATGCCAATGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTCAAATTGGAACTCACTAAAGGGTGTGGAACGACATCTACAGACTATTGAAATTATATCCCCCTACTACATAGAATGGGTGTTCATAGAGAGTCGATTAGCTTTAGAGGTACAAAAAACTTAAAGAAAAGAACTAGTAGTAACCCTTTTGATAAAGGAACTAGTAGTATGCAGTTTGATGAAAAAGATAATATATTCAGTATGCTGAATAATTTACAAGTCCCGAACACGAAGAGGAAATGAAGGAAAGTCGTTTGGAGGATGAAATGTCGAGGAATATTGGGATAGATATAAATGAAGATACAACAAACATATTTCAAGGCTTA

mRNA sequence

ATTTGTTTTGGCTATCCTGCAGTTATAGGACTTAAAATGGACAAGGGTCGGATGAAACTTAGGAATAAGTTTTTTTTTTAGTATAGAGAGAGAATGGCTCAATTTCTAGACGTTGTCAAGGTTCACGTTGATGCCAATGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTCAAATTGGAACTCACTAAAGGGTGTGGAACGACATCTACAGACTATTGAAATTATATCCCCCTACTACATAGAATGGGTGTTCATAGAGAGTCGATTAGCTTTAGAGGTACAAAAAACTTAAAGAAAAGAACTAGTAGTAACCCTTTTGATAAAGGAACTAGTAGTATGCAGTTTGATGAAAAAGATAATATATTCAGTATGCTGAATAATTTACAAGTCCCGAACACGAAGAGGAAATGAAGGAAAGTCGTTTGGAGGATGAAATGTCGAGGAATATTGGGATAGATATAAATGAAGATACAACAAACATATTTCAAGGCTTA

Coding sequence (CDS)

ATGGCTCAATTTCTAGACGTTGTCAAGGTTCACGTTGATGCCAATGGACGAATAAGGTGTCCATGCAAGAGATGTATGAACTCAAATTGGAACTCACTAAAGGGTGTGGAACGACATCTACAGACTATTGAAATTATATCCCCCTACTACATAGAATGGGTGTTCATAGAGAGTCGATTAGCTTTAGAGGTACAAAAAACTTAA

Protein sequence

MAQFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVFIESRLALEVQKT
Homology
[Close]
BLAST of MELO3C031723.2 vs. NCBI nr
Match: CAN78763.1 (hypothetical protein VITISV_003315 [Vitis vinifera])

HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 4  FLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVFIESRLALE 63
          FL V K HVD N + RCPCK C N+ W S+  +E HL    I + Y   W+F   +++++
Sbjct: 36 FLQVAKNHVDQNXKTRCPCKHCQNAFWKSIYDIETHLYKYGIATTYQ-RWIFHGEKVSVD 94

[Close]
BLAST of MELO3C031723.2 vs. NCBI nr
Match: XP_018846773.1 (PREDICTED: uncharacterized protein LOC109010396 [Juglans regia])

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-05
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3  QFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 56
          QFL + + H  A+  IRCPC+RC N  ++S+  +E HL  I  I P Y EW+F
Sbjct: 23 QFLSMAQAHTPASNHIRCPCRRCRNRAFHSIHTIEDHL-FIMGIDPTYTEWIF 74

[Close]
BLAST of MELO3C031723.2 vs. NCBI nr
Match: XP_018826552.1 (PREDICTED: uncharacterized protein LOC108995429 [Juglans regia])

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-04
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3  QFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 56
          QF+ + + H   + RIRCPCKRC N  +++L  VE HL  I  I P Y EW+F
Sbjct: 23 QFMAMAQAHSPGSDRIRCPCKRCRNRAFHTLSLVEDHLFIIG-IDPTYTEWIF 74

[Close]
BLAST of MELO3C031723.2 vs. NCBI nr
Match: XP_003631174.1 (PREDICTED: uncharacterized protein LOC100852986 [Vitis vinifera])

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-04
Identity = 22/63 (34.92%), Postives = 35/63 (55.56%), Query Frame = 0 

Query: 4  FLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVFIESRLALE 63
          F+ V K HV+ +G+ RCPC+ C N+ W S+  +E HL    I + Y   W+F   ++ + 
Sbjct: 23 FIQVAKNHVNKDGKSRCPCRDCQNAFWKSINDIEIHLCRFGIATTYQ-RWIFHGEKVDIN 82

Query: 64 VQK 67
            K
Sbjct: 83 YYK 84

[Close]
BLAST of MELO3C031723.2 vs. NCBI nr
Match: XP_018834298.1 (PREDICTED: uncharacterized protein LOC109001468 [Juglans regia])

HSP 1 Score: 52.8 bits (125), Expect = 5.4e-04
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3  QFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 56
          QF+ + + H   + RIRCPCKRC N  +++L  VE HL  I  I P + EW+F
Sbjct: 23 QFMAMAQAHSPGSDRIRCPCKRCRNRAFHTLSLVEDHLFIIG-IDPTHTEWIF 74

[Close]
BLAST of MELO3C031723.2 vs. TrEMBL
Match: tr|A5B8Q2|A5B8Q2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003315 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-05
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 0 

Query: 4  FLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVFIESRLALE 63
          FL V K HVD N + RCPCK C N+ W S+  +E HL    I + Y   W+F   +++++
Sbjct: 36 FLQVAKNHVDQNXKTRCPCKHCQNAFWKSIYDIETHLYKYGIATTYQ-RWIFHGEKVSVD 94

[Close]
BLAST of MELO3C031723.2 vs. TrEMBL
Match: tr|A0A2I4GS97|A0A2I4GS97_9ROSI (uncharacterized protein LOC109010396 OS=Juglans regia OX=51240 GN=LOC109010396 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.5e-05
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3  QFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 56
          QFL + + H  A+  IRCPC+RC N  ++S+  +E HL  I  I P Y EW+F
Sbjct: 23 QFLSMAQAHTPASNHIRCPCRRCRNRAFHSIHTIEDHL-FIMGIDPTYTEWIF 74

[Close]
BLAST of MELO3C031723.2 vs. TrEMBL
Match: tr|A0A2I4F4I9|A0A2I4F4I9_9ROSI (uncharacterized protein LOC108995429 OS=Juglans regia OX=51240 GN=LOC108995429 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.4e-05
Identity = 25/53 (47.17%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3  QFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 56
          QF+ + + H   + RIRCPCKRC N  +++L  VE HL  I  I P Y EW+F
Sbjct: 23 QFMAMAQAHSPGSDRIRCPCKRCRNRAFHTLSLVEDHLFIIG-IDPTYTEWIF 74

[Close]
BLAST of MELO3C031723.2 vs. TrEMBL
Match: tr|A0A2I4HKX9|A0A2I4HKX9_9ROSI (uncharacterized protein LOC109015117 OS=Juglans regia OX=51240 GN=LOC109019034 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-04
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3  QFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 56
          QF+ + + H   + RIRCPCKRC N  +++L  VE HL  I  I P + EW+F
Sbjct: 23 QFMAMAQAHSPGSDRIRCPCKRCRNRAFHTLSLVEDHLFIIG-IDPTHTEWIF 74

[Close]
BLAST of MELO3C031723.2 vs. TrEMBL
Match: tr|A0A2I4FRN9|A0A2I4FRN9_9ROSI (uncharacterized protein LOC109001468 OS=Juglans regia OX=51240 GN=LOC109001468 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.6e-04
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 0 

Query: 3  QFLDVVKVHVDANGRIRCPCKRCMNSNWNSLKGVERHLQTIEIISPYYIEWVF 56
          QF+ + + H   + RIRCPCKRC N  +++L  VE HL  I  I P + EW+F
Sbjct: 23 QFMAMAQAHSPGSDRIRCPCKRCRNRAFHTLSLVEDHLFIIG-IDPTHTEWIF 74

The following BLAST results are available for this feature:
BLAST of MELO3C031723.2 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN78763.11.7e-0540.00hypothetical protein VITISV_003315 [Vitis vinifera][more]
XP_018846773.18.3e-0545.28PREDICTED: uncharacterized protein LOC109010396 [Juglans regia][more]
XP_018826552.11.4e-0447.17PREDICTED: uncharacterized protein LOC108995429 [Juglans regia][more]
XP_003631174.15.4e-0434.92PREDICTED: uncharacterized protein LOC100852986 [Vitis vinifera][more]
XP_018834298.15.4e-0445.28PREDICTED: uncharacterized protein LOC109001468 [Juglans regia][more]
BLAST of MELO3C031723.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031723.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031723.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5B8Q2|A5B8Q2_VITVI1.1e-0540.00Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_003315 PE=4 SV=1[more]
tr|A0A2I4GS97|A0A2I4GS97_9ROSI5.5e-0545.28uncharacterized protein LOC109010396 OS=Juglans regia OX=51240 GN=LOC109010396 P... [more]
tr|A0A2I4F4I9|A0A2I4F4I9_9ROSI9.4e-0547.17uncharacterized protein LOC108995429 OS=Juglans regia OX=51240 GN=LOC108995429 P... [more]
tr|A0A2I4HKX9|A0A2I4HKX9_9ROSI3.6e-0445.28uncharacterized protein LOC109015117 OS=Juglans regia OX=51240 GN=LOC109019034 P... [more]
tr|A0A2I4FRN9|A0A2I4FRN9_9ROSI3.6e-0445.28uncharacterized protein LOC109001468 OS=Juglans regia OX=51240 GN=LOC109001468 P... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029480Transpos_assoc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031723.2.1MELO3C031723.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 2..51
e-value: 5.4E-10
score: 39.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031723.2Cucumber (Gy14) v2cgybmedB215
MELO3C031723.2Cucumber (Gy14) v1cgymedB144
MELO3C031723.2Cucurbita maxima (Rimu)cmamedB274
MELO3C031723.2Cucurbita maxima (Rimu)cmamedB496
MELO3C031723.2Cucurbita moschata (Rifu)cmomedB261
MELO3C031723.2Cucurbita moschata (Rifu)cmomedB483
MELO3C031723.2Cucurbita pepo (Zucchini)cpemedB630
MELO3C031723.2Cucurbita pepo (Zucchini)cpemedB694
MELO3C031723.2Wild cucumber (PI 183967)cpimedB239
MELO3C031723.2Cucumber (Chinese Long) v2cumedB238
MELO3C031723.2Bottle gourd (USVL1VR-Ls)lsimedB384
MELO3C031723.2Watermelon (Charleston Gray)medwcgB417
MELO3C031723.2Watermelon (97103) v1medwmB448
MELO3C031723.2Silver-seed gourdcarmedB0185
MELO3C031723.2Silver-seed gourdcarmedB0771
MELO3C031723.2Cucumber (Chinese Long) v3cucmedB246
MELO3C031723.2Watermelon (97103) v2medwmbB424
MELO3C031723.2Wax gourdmedwgoB531