MELO3C031712.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031712.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein FAR1-RELATED SEQUENCE 5-like
Location	chr06 : 13471778 .. 13472248 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTGATCATTCCATTCCTAAAGAGATTGTGCATAAGGCTTGTACAAATCTTGGAGTTAATATAAGTTACCAGAAACCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACAAGGTGACACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTAATAAATTAGTTGAATCTAACCCAGGTATGATCAGTTTTTTGTATCAGATTTAAATTGATTTGTAGATAGATGTGGATAGACTAATAACAGTTTATCTAGATAGACCAATATTGACATCTTTGATATTCTTTCTGTTCTTTTTTGTTTGTGTTGATAAAAATGTGTTTTTAATTATTATAGGTACATGCACTGCTTTAGAAATGGATGATAGTGGTCTTTTCAAGTTTTGTTTTATGGCTTTTTGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGGGACATTTTTGAAG

mRNA sequence

ATGTCTACTGATCATTCCATTCCTAAAGAGATTGTGCATAAGGCTTGTACAAATCTTGGAGTTAATATAAGTTACCAGAAACCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACAAGGTGACACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTAATAAATTAGTTGAATCTAACCCAGAAATGGATGATAGTGGTCTTTTCAAGTTTTGTTTTATGGCTTTTTGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGGGACATTTTTGAAG

Coding sequence (CDS)

ATGTCTACTGATCATTCCATTCCTAAAGAGATTGTGCATAAGGCTTGTACAAATCTTGGAGTTAATATAAGTTACCAGAAACCTTGGAGGGCAAAAGAACATATGGTAAAGATATTACAAGGTGACACAGTTGAATCGTATGCATTGATTCCAAGATTCTTTAATAAATTAGTTGAATCTAACCCAGAAATGGATGATAGTGGTCTTTTCAAGTTTTGTTTTATGGCTTTTTGTGCATCAATTGAGGGGTGGAAATATTGTAGACCTATTATTTCTGTTGATGGGACATTTTTGAAG

Protein sequence

MSTDHSIPKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNPEMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFLK

Homology

[Close]

BLAST of MELO3C031712.2 vs. NCBI nr
Match: XP_022155934.1 (uncharacterized protein LOC111022933 [Momordica charantia])

HSP 1 Score: 115.9 bits (289), Expect = 7.7e-23
Identity = 58/103 (56.31%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 2   STDHSIPKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESN 61
           S+D S PK I+H   TN GV ISY K WRAK  + K+L GD  +SYALIP+ F KL E N
Sbjct: 9   SSDRSTPKVIIHHMRTNYGVAISYYKAWRAKTTVNKLLTGDADDSYALIPKIFVKLKELN 68

Query: 62  P------EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFL 99
           P      E+D +  FK+CFMA  ASIE W+YCR  IS+DGTFL
Sbjct: 69  PCIYTAYEIDKTRHFKYCFMALGASIESWRYCRHNISIDGTFL 111

[Close]

BLAST of MELO3C031712.2 vs. NCBI nr
Match: XP_022841929.1 (uncharacterized protein LOC111365622 [Olea europaea var. sylvestris])

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-18
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           PKEI ++     GV ++Y K WR +E  +K+++GD  ES++ IP FF  L + NP     
Sbjct: 252 PKEICNEMLHTFGVYLNYTKAWRCREQTLKMIRGDPTESFSRIPSFFYMLQQKNPGTVTY 311

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFL 99
            E+D    FK+CFMA  ASI GW +CRP+I VDGT+L
Sbjct: 312 LEIDSHNRFKYCFMALGASIRGWPHCRPVIVVDGTYL 348

[Close]

BLAST of MELO3C031712.2 vs. NCBI nr
Match: XP_022872040.1 (uncharacterized protein LOC111391125 [Olea europaea var. sylvestris])

HSP 1 Score: 98.2 bits (243), Expect = 1.7e-17
Identity = 43/97 (44.33%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           PK+I  +     GV ++Y K WR +E  +K++ GD  ES++ IP FF  + + NP     
Sbjct: 77  PKDICSEMLHTFGVYLNYTKAWRCREQTLKMIMGDPTESFSRIPSFFYMIQQKNPGTVTY 136

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFL 99
            E+D    FK+CFMA  ASI GW +CRP+I VDGT+L
Sbjct: 137 LEIDSHNRFKYCFMALGASIRGWPHCRPVIVVDGTYL 173

[Close]

BLAST of MELO3C031712.2 vs. NCBI nr
Match: XP_022872609.1 (uncharacterized protein LOC111391594 [Olea europaea var. sylvestris])

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 43/97 (44.33%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           P +I +      GV+++Y + WR++E  +K+L+GD  +S+  IP FF+ L ++NP     
Sbjct: 228 PNDIRNDMLHTYGVSLNYVQAWRSREETLKLLRGDPTDSFNKIPAFFSVLQQTNPGSVTS 287

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFL 99
            E+D    FK+CFMA  ASI GWK+CRPI+ VDGT+L
Sbjct: 288 LEIDGHNRFKYCFMALGASIRGWKHCRPIVVVDGTYL 324

[Close]

BLAST of MELO3C031712.2 vs. NCBI nr
Match: XP_022891910.1 (uncharacterized protein LOC111406764 [Olea europaea var. sylvestris])

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           PK+I        GV ++Y K WR+ E  +K+++GD  ES+  IP FF  + + NP     
Sbjct: 252 PKDICSDMLHTFGVYLNYSKAWRSHEQTLKMIRGDPTESFGRIPSFFYMIRQRNPGTVTE 311

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFL 99
            E+D    FK+CFMA  ASI+GW++CRP+I VDGT+L
Sbjct: 312 LEVDSHNRFKYCFMALGASIQGWQHCRPVIVVDGTYL 348

[Close]

BLAST of MELO3C031712.2 vs. TAIR10
Match: AT1G64255.1 (MuDR family transposase)

HSP 1 Score: 45.1 bits (105), Expect = 3.0e-05
Identity = 27/74 (36.49%), Postives = 38/74 (51.35%), Query Frame = 0


Query: 31  AKEHMVKILQGDTVESYALIPRFFNKLVESNPEMDD--------SGLFKFC--FMAFCAS 90
           AKE  +K + GD  +S+   P+  + L  SN  + D             FC  F AF  S
Sbjct: 316 AKEKAIKRVFGDWDQSFEDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVFWAFPQS 375

Query: 91  IEGWKYCRPIISVD 95
           IEG+++CRP+I VD
Sbjct: 376 IEGFQHCRPLIVVD 389

[Close]

BLAST of MELO3C031712.2 vs. TAIR10
Match: AT1G49920.1 (MuDR family transposase)

HSP 1 Score: 44.7 bits (104), Expect = 3.9e-05
Identity = 26/75 (34.67%), Postives = 38/75 (50.67%), Query Frame = 0


Query: 31  AKEHMVKILQGDTVESYALIPRFFNKLVESNPEMDD-----------SGLFKFCFMAFCA 90
           AK   +K   GD  +S+ LIP+  + L  SN  + D              F+  F AF  
Sbjct: 311 AKVKAIKRFFGDWDQSFRLIPKLMSVLHSSNGLLVDWQYDSLTHDPEHASFRGLFWAFSQ 370

Query: 91  SIEGWKYCRPIISVD 95
           SI+G+++CRP+I VD
Sbjct: 371 SIQGFQHCRPLIVVD 385

[Close]

BLAST of MELO3C031712.2 vs. TAIR10
Match: AT1G64260.1 (MuDR family transposase)

HSP 1 Score: 43.5 bits (101), Expect = 8.8e-05
Identity = 24/85 (28.24%), Postives = 41/85 (48.24%), Query Frame = 0


Query: 20  GVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNPEM----------DDSGL 79
           G  +   K    K  ++K + GD  +S+ ++P+  +    SN  +           D   
Sbjct: 298 GYELQTSKMRDGKLEVIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPDFAS 357

Query: 80  FKFCFMAFCASIEGWKYCRPIISVD 95
           F+  F +F  SIEG+++CRP+I VD
Sbjct: 358 FRGVFWSFSQSIEGFQHCRPLIVVD 382

[Close]

BLAST of MELO3C031712.2 vs. TrEMBL
Match: tr|A0A1U7VGI6|A0A1U7VGI6_NICSY (uncharacterized protein LOC104215801 OS=Nicotiana sylvestris OX=4096 GN=LOC104215801 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.6e-16
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           PK+I     +  GVN+SY + WRAKE  ++ L+GD  +SY+ +P++F  L E+ P     
Sbjct: 32  PKDIQTDMLSEHGVNLSYMQAWRAKEKTLQFLRGDPADSYSKLPKYFYILEETYPGLVVK 91

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFLK 100
            +      F + F+A C SI GWK+CRP++ VDGTFLK
Sbjct: 92  LKKTADKCFLYAFVALCTSISGWKHCRPVVVVDGTFLK 129

[Close]

BLAST of MELO3C031712.2 vs. TrEMBL
Match: tr|U5D175|U5D175_AMBTC (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s04652p00001680 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.1e-16
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 3   TDHSIPKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP 62
           T   I  E+ HK     GV ++Y K WR+KEH  + L+G   ESY L+P F + L ++NP
Sbjct: 213 TPQDIRGEMKHK----YGVRMNYMKAWRSKEHAQEELRGKANESYRLLPGFLHMLQKTNP 272

Query: 63  ------EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFLK 100
                 E +D   FK+ F+A  ASI+GWK C+PII VDGTFLK
Sbjct: 273 GTIVHMETEDDNSFKYLFVALDASIKGWKKCKPIIVVDGTFLK 311

[Close]

BLAST of MELO3C031712.2 vs. TrEMBL
Match: tr|K4BII7|K4BII7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-16
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           PK+I H      GV ++Y + WRAKE  +++++GD ++SYA +P +F+ L  + P     
Sbjct: 278 PKDIQHDMLAEYGVRLTYMQAWRAKEAALELIRGDPIQSYAKLPSYFHILEATYPGSHIR 337

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFLK 100
               +   F + F+A   SI+GW+YCRPI+ VDGTFLK
Sbjct: 338 FHKSEDDRFLYAFVALFTSIKGWEYCRPIVVVDGTFLK 375

[Close]

BLAST of MELO3C031712.2 vs. TrEMBL
Match: tr|A0A1S4E392|A0A1S4E392_CUCME (uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 41/98 (41.84%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           P ++++    +  VNISY K WR +E  +  ++G   +SYA++  F + L+ +NP     
Sbjct: 9   PSDVINYMKIHHSVNISYDKAWRGREIALNSIRGTPEDSYAMLSAFSDALIRNNPGTYTA 68

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFLK 100
            E DD G FKF FMA  ASI+ W YC P+ISVDG  +K
Sbjct: 69  EEADDEGRFKFYFMALAASIDAWNYCVPVISVDGAAMK 106

[Close]

BLAST of MELO3C031712.2 vs. TrEMBL
Match: tr|A0A1U7XQ64|A0A1U7XQ64_NICSY (protein FAR1-RELATED SEQUENCE 5-like OS=Nicotiana sylvestris OX=4096 GN=LOC104236421 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-15
Identity = 40/98 (40.82%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 8   PKEIVHKACTNLGVNISYQKPWRAKEHMVKILQGDTVESYALIPRFFNKLVESNP----- 67
           PK+I     +  GVN+SY + WRAKE  ++ L+G+  +SY+ +P++F  L E+ P     
Sbjct: 32  PKDIQTDMLSEHGVNLSYMQDWRAKEKALQFLRGNLADSYSNLPKYFYILEETYPGSVVK 91

Query: 68  -EMDDSGLFKFCFMAFCASIEGWKYCRPIISVDGTFLK 100
            +      F + F+A C SI GW++CRP++ VDGTFLK
Sbjct: 92  LKKTADECFLYAFVALCTSISGWQHCRPVVVVDGTFLK 129

The following BLAST results are available for this feature:

BLAST of MELO3C031712.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155934.1	7.7e-23	56.31	uncharacterized protein LOC111022933 [Momordica charantia]	[more]
XP_022841929.1	2.0e-18	46.39	uncharacterized protein LOC111365622 [Olea europaea var. sylvestris]	[more]
XP_022872040.1	1.7e-17	44.33	uncharacterized protein LOC111391125 [Olea europaea var. sylvestris]	[more]
XP_022872609.1	2.2e-17	44.33	uncharacterized protein LOC111391594 [Olea europaea var. sylvestris]	[more]
XP_022891910.1	2.2e-17	44.33	uncharacterized protein LOC111406764 [Olea europaea var. sylvestris]	[more]

BLAST of MELO3C031712.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G64255.1	3.0e-05	36.49	MuDR family transposase	[more]
AT1G49920.1	3.9e-05	34.67	MuDR family transposase	[more]
AT1G64260.1	8.8e-05	28.24	MuDR family transposase	[more]

BLAST of MELO3C031712.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031712.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1U7VGI6\|A0A1U7VGI6_NICSY	1.6e-16	42.86	uncharacterized protein LOC104215801 OS=Nicotiana sylvestris OX=4096 GN=LOC10421...	[more]
tr\|U5D175\|U5D175_AMBTC	2.1e-16	46.60	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s046...	[more]
tr\|K4BII7\|K4BII7_SOLLC	3.5e-16	40.82	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
tr\|A0A1S4E392\|A0A1S4E392_CUCME	1.3e-15	41.84	uncharacterized protein LOC107991824 OS=Cucumis melo OX=3656 GN=LOC107991824 PE=...	[more]
tr\|A0A1U7XQ64\|A0A1U7XQ64_NICSY	2.3e-15	40.82	protein FAR1-RELATED SEQUENCE 5-like OS=Nicotiana sylvestris OX=4096 GN=LOC10423...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031712.2.1	MELO3C031712.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31973	FAMILY NOT NAMED	coord: 6..99

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031712.2	Cucumber (Gy14) v2	cgybmedB215
MELO3C031712.2	Cucumber (Gy14) v1	cgymedB144
MELO3C031712.2	Cucurbita maxima (Rimu)	cmamedB274
MELO3C031712.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C031712.2	Cucurbita moschata (Rifu)	cmomedB261
MELO3C031712.2	Cucurbita moschata (Rifu)	cmomedB483
MELO3C031712.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C031712.2	Cucurbita pepo (Zucchini)	cpemedB694
MELO3C031712.2	Wild cucumber (PI 183967)	cpimedB239
MELO3C031712.2	Cucumber (Chinese Long) v2	cumedB238
MELO3C031712.2	Bottle gourd (USVL1VR-Ls)	lsimedB384
MELO3C031712.2	Watermelon (Charleston Gray)	medwcgB417
MELO3C031712.2	Watermelon (97103) v1	medwmB448
MELO3C031712.2	Silver-seed gourd	carmedB0185
MELO3C031712.2	Silver-seed gourd	carmedB0771
MELO3C031712.2	Cucumber (Chinese Long) v3	cucmedB246
MELO3C031712.2	Watermelon (97103) v2	medwmbB424
MELO3C031712.2	Wax gourd	medwgoB531