MELO3C031674.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031674.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glycine-rich cell wall structural protein 1.0-like
Location	chr06 : 3629633 .. 3630091 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

mRNA sequence

ATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

Coding sequence (CDS)

ATGTACGTCGGAGGAACCAGATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGTGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACACGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

Protein sequence

MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRGGTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGGGTGRLLGNSGESHESIERERDVEYSLKERNWE

Homology

[Close]

BLAST of MELO3C031674.2 vs. NCBI nr
Match: XP_016898954.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 4.2e-12
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MYVGGTRSVGDGDVNISGPKXXXXXXXXXXXXXXXXXXXISXXXXXXXXXXXXXXXXXXX 60
           MYVGGTRSVGDGDVNISGPKXXXXXXXXXXXXXXXXXXXISXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MYVGGTRSVGDGDVNISGPKXXXXXXXXXXXXXXXXXXXISXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXGTSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXGTSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXGTSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXGRLLGNSGESHESIERERDVEYSLKERNWE 153
           XXGRLLGNSGESHESIERERDVEYSLKERNWE
Sbjct: 121 XXGRLLGNSGESHESIERERDVEYSLKERNWE 152

[Close]

BLAST of MELO3C031674.2 vs. TrEMBL
Match: tr|A0A1S4DSJ3|A0A1S4DSJ3_CUCME (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC107990388 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MYVGGTRSVGDGDVNISGPKXXXXXXXXXXXXXXXXXXXISXXXXXXXXXXXXXXXXXXX 60
           MYVGGTRSVGDGDVNISGPKXXXXXXXXXXXXXXXXXXXISXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MYVGGTRSVGDGDVNISGPKXXXXXXXXXXXXXXXXXXXISXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXGTSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXGTSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXGTSIPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXGRLLGNSGESHESIERERDVEYSLKERNWE 153
           XXGRLLGNSGESHESIERERDVEYSLKERNWE
Sbjct: 121 XXGRLLGNSGESHESIERERDVEYSLKERNWE 152

The following BLAST results are available for this feature:

BLAST of MELO3C031674.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016898954.1	4.2e-12	100.00	PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]	[more]

BLAST of MELO3C031674.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031674.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031674.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DSJ3\|A0A1S4DSJ3_CUCME	2.8e-12	100.00	glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031674.2.1	MELO3C031674.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..152

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031674.2	Wax gourd	medwgoB526
MELO3C031674.2	Wax gourd	medwgoB530
MELO3C031674.2	Wax gourd	medwgoB557
MELO3C031674.2	Cucumber (Gy14) v2	cgybmedB124
MELO3C031674.2	Cucumber (Gy14) v2	cgybmedB125
MELO3C031674.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C031674.2	Cucumber (Gy14) v1	cgymedB215
MELO3C031674.2	Cucumber (Gy14) v1	cgymedB432
MELO3C031674.2	Cucumber (Gy14) v1	cgymedB630
MELO3C031674.2	Cucurbita maxima (Rimu)	cmamedB273
MELO3C031674.2	Cucurbita maxima (Rimu)	cmamedB398
MELO3C031674.2	Cucurbita maxima (Rimu)	cmamedB557
MELO3C031674.2	Cucurbita maxima (Rimu)	cmamedB660
MELO3C031674.2	Cucurbita maxima (Rimu)	cmamedB835
MELO3C031674.2	Cucurbita maxima (Rimu)	cmamedB863
MELO3C031674.2	Cucurbita maxima (Rimu)	cmamedB950
MELO3C031674.2	Cucurbita moschata (Rifu)	cmomedB260
MELO3C031674.2	Cucurbita moschata (Rifu)	cmomedB385
MELO3C031674.2	Cucurbita moschata (Rifu)	cmomedB545
MELO3C031674.2	Cucurbita moschata (Rifu)	cmomedB648
MELO3C031674.2	Cucurbita moschata (Rifu)	cmomedB857
MELO3C031674.2	Cucurbita moschata (Rifu)	cmomedB940
MELO3C031674.2	Cucurbita pepo (Zucchini)	cpemedB170
MELO3C031674.2	Cucurbita pepo (Zucchini)	cpemedB282
MELO3C031674.2	Cucurbita pepo (Zucchini)	cpemedB371
MELO3C031674.2	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C031674.2	Cucurbita pepo (Zucchini)	cpemedB834
MELO3C031674.2	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C031674.2	Wild cucumber (PI 183967)	cpimedB137
MELO3C031674.2	Wild cucumber (PI 183967)	cpimedB138
MELO3C031674.2	Wild cucumber (PI 183967)	cpimedB140
MELO3C031674.2	Wild cucumber (PI 183967)	cpimedB224
MELO3C031674.2	Cucumber (Chinese Long) v2	cumedB139
MELO3C031674.2	Cucumber (Chinese Long) v2	cumedB137
MELO3C031674.2	Cucumber (Chinese Long) v2	cumedB138
MELO3C031674.2	Cucumber (Chinese Long) v2	cumedB223
MELO3C031674.2	Melon (DHL92) v3.6.1	medmedB145
MELO3C031674.2	Melon (DHL92) v3.6.1	medmedB146
MELO3C031674.2	Bottle gourd (USVL1VR-Ls)	lsimedB032
MELO3C031674.2	Bottle gourd (USVL1VR-Ls)	lsimedB232
MELO3C031674.2	Bottle gourd (USVL1VR-Ls)	lsimedB396
MELO3C031674.2	Bottle gourd (USVL1VR-Ls)	lsimedB398
MELO3C031674.2	Watermelon (Charleston Gray)	medwcgB414
MELO3C031674.2	Watermelon (Charleston Gray)	medwcgB416
MELO3C031674.2	Watermelon (Charleston Gray)	medwcgB437
MELO3C031674.2	Watermelon (Charleston Gray)	medwcgB439
MELO3C031674.2	Watermelon (97103) v1	medwmB444
MELO3C031674.2	Watermelon (97103) v1	medwmB447
MELO3C031674.2	Watermelon (97103) v1	medwmB474
MELO3C031674.2	Silver-seed gourd	carmedB0244
MELO3C031674.2	Silver-seed gourd	carmedB0248
MELO3C031674.2	Silver-seed gourd	carmedB0340
MELO3C031674.2	Silver-seed gourd	carmedB0762
MELO3C031674.2	Silver-seed gourd	carmedB0792
MELO3C031674.2	Silver-seed gourd	carmedB0947
MELO3C031674.2	Cucumber (Chinese Long) v3	cucmedB140
MELO3C031674.2	Cucumber (Chinese Long) v3	cucmedB141
MELO3C031674.2	Cucumber (Chinese Long) v3	cucmedB230
MELO3C031674.2	Watermelon (97103) v2	medwmbB423
MELO3C031674.2	Watermelon (97103) v2	medwmbB442
MELO3C031674.2	Watermelon (97103) v2	medwmbB445
MELO3C031674.2	Watermelon (97103) v2	medwmbB447