MELO3C031645.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031645.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 7695794 .. 7696206 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAATCGGAGGAGGGAGAGGCAAATCAAAGTAATGAGAAAGGTCTTGATCTAATGGAAACGACTAAGAATGGTTTACTAACAAGCCCATTAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAGCAAAAGACGGTTTGATCAGTCTGGTAAAGATTTCGAGCAAGACGTTCTTGCCCCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCCCCCATGCCCGGTGCAAAGAAACCAAACTTGAAGAGGCCAGCATTTGTTTCAGTAGTACTTCCCAAATCGATTACATCTGGTGTAGTTGGAATTCAATTCAATGAAAGTAAAGTTGATAGTGTGGAAAAAGAGAATCCATTTTTCTCTTTGCTCACTGGCGGCAAAGCCAAAAGTAGTTTATTTTAAGCCGTAG

mRNA sequence

ATGATGAATCGGAGGAGGGAGAGGCAAATCAAAGTAATGAGAAAGGTCTTGATCTAATGGAAACGACTAAGAATGGTTTACTAACAAGCCCATTAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAGCAAAAGACGGTTTGATCAGTCTGGTAAAGATTTCGAGCAAGACGTTCTTGCCCCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCCCCCATGCCCGGTGCAAAGAAACCAAACTTGAAGAGGCCAGCATTTGTTTCAGTAGTACTTCCCAAATCGATTACATCTGGTGTAGTTGGAATTCAATTCAATGAAAGTAAAGTTGATAGTGTGGAAAAAGAGAATCCATTTTTCTCTTTGCTCACTGGCGGCAAAGCCAAAAGTAGTTTATTTTAAGCCGTAG

Coding sequence (CDS)

ATGGAAACGACTAAGAATGGTTTACTAACAAGCCCATTAGGAAGAGTTAATGATATATCTATGGAAGATAATACAGAAGCAAAAGACGGTTTGATCAGTCTGGTAAAGATTTCGAGCAAGACGTTCTTGCCCCAAGAAGGTAGTTCTCTCGTAAATTTAAGCCCCCCATGCCCGGTGCAAAGAAACCAAACTTGA

Protein sequence

METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCPVQRNQT

Homology

[Close]

BLAST of MELO3C031645.2 vs. NCBI nr
Match: XP_004140752.1 (PREDICTED: uncharacterized protein LOC101210672 [Cucumis sativus] >XP_011651188.1 PREDICTED: uncharacterized protein LOC101210672 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 59
           M+TT NGLL SP G VNDISMEDNTE KDGLIS VK +SKTFLPQEG+SLVN SPP P
Sbjct: 279 MKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFLPQEGNSLVNSSPPMP 336

[Close]

BLAST of MELO3C031645.2 vs. NCBI nr
Match: KGN57416.1 (hypothetical protein Csa_3G183980 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 59
           M+TT NGLL SP G VNDISMEDNTE KDGLIS VK +SKTFLPQEG+SLVN SPP P
Sbjct: 204 MKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFLPQEGNSLVNSSPPMP 261

[Close]

BLAST of MELO3C031645.2 vs. NCBI nr
Match: XP_008466256.1 (PREDICTED: uncharacterized protein LOC103503723 isoform X1 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 237 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 296

Query: 61  VQR 62
           V +
Sbjct: 297 VAK 299

[Close]

BLAST of MELO3C031645.2 vs. NCBI nr
Match: XP_008466257.1 (PREDICTED: uncharacterized protein LOC103503723 isoform X2 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 166 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 225

Query: 61  VQR 62
           V +
Sbjct: 226 VAK 228

[Close]

BLAST of MELO3C031645.2 vs. NCBI nr
Match: XP_022932178.1 (uncharacterized protein LOC111438493 [Cucurbita moschata] >XP_022932179.1 uncharacterized protein LOC111438493 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 1.0e-07
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSP 56
           M+ +KN LL SP  RVNDIS++D TE KD  IS    SS+TF+P+EGSSLVN SP
Sbjct: 269 MKMSKNDLLASPSKRVNDISVKDITETKDSSISPAATSSQTFVPREGSSLVNSSP 323

[Close]

BLAST of MELO3C031645.2 vs. TrEMBL
Match: tr|A0A0A0LBJ0|A0A0A0LBJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183980 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.6e-16
Identity = 46/58 (79.31%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMEDNTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 59
           M+TT NGLL SP G VNDISMEDNTE KDGLIS VK +SKTFLPQEG+SLVN SPP P
Sbjct: 204 MKTTPNGLLASPSGSVNDISMEDNTETKDGLISPVKTTSKTFLPQEGNSLVNSSPPMP 261

[Close]

BLAST of MELO3C031645.2 vs. TrEMBL
Match: tr|A0A1S3CQU1|A0A1S3CQU1_CUCME (uncharacterized protein LOC103503723 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503723 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 166 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 225

Query: 61  VQR 62
           V +
Sbjct: 226 VAK 228

[Close]

BLAST of MELO3C031645.2 vs. TrEMBL
Match: tr|A0A1S3CQT2|A0A1S3CQT2_CUCME (uncharacterized protein LOC103503723 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503723 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 49/63 (77.78%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   METTKNGLLTSPLGRVNDISMED--NTEAKDGLISLVKISSKTFLPQEGSSLVNLSPPCP 60
           M+TTKNGLL SP GRVNDIS+ED  NTE KDGLIS VK SSKTFLPQEGSSLVN S P P
Sbjct: 237 MKTTKNGLLASPSGRVNDISLEDNTNTETKDGLISPVKTSSKTFLPQEGSSLVNSSLPMP 296

Query: 61  VQR 62
           V +
Sbjct: 297 VAK 299

The following BLAST results are available for this feature:

BLAST of MELO3C031645.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140752.1	1.0e-15	79.31	PREDICTED: uncharacterized protein LOC101210672 [Cucumis sativus] >XP_011651188....	[more]
KGN57416.1	1.0e-15	79.31	hypothetical protein Csa_3G183980 [Cucumis sativus]	[more]
XP_008466256.1	2.2e-15	77.78	PREDICTED: uncharacterized protein LOC103503723 isoform X1 [Cucumis melo]	[more]
XP_008466257.1	2.2e-15	77.78	PREDICTED: uncharacterized protein LOC103503723 isoform X2 [Cucumis melo]	[more]
XP_022932178.1	1.0e-07	61.82	uncharacterized protein LOC111438493 [Cucurbita moschata] >XP_022932179.1 unchar...	[more]

BLAST of MELO3C031645.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031645.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031645.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LBJ0\|A0A0A0LBJ0_CUCSA	6.6e-16	79.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G183980 PE=4 SV=1	[more]
tr\|A0A1S3CQU1\|A0A1S3CQU1_CUCME	1.5e-15	77.78	uncharacterized protein LOC103503723 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3CQT2\|A0A1S3CQT2_CUCME	1.5e-15	77.78	uncharacterized protein LOC103503723 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031645.2.1	MELO3C031645.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C031645.2	Csa3G183980	Cucumber (Chinese Long) v2	cumedB243
MELO3C031645.2	CSPI03G17310	Wild cucumber (PI 183967)	cpimedB245
MELO3C031645.2	Cucsa.108170	Cucumber (Gy14) v1	cgymedB146
MELO3C031645.2	CsGy3G017360	Cucumber (Gy14) v2	cgybmedB220
MELO3C031645.2	CsaV3_3G017510	Cucumber (Chinese Long) v3	cucmedB251

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031645.2	Wax gourd	medwgoB536
MELO3C031645.2	Cucumber (Gy14) v2	cgybmedB355
MELO3C031645.2	Cucurbita moschata (Rifu)	cmomedB426
MELO3C031645.2	Cucumber (Gy14) v1	cgymedB364
MELO3C031645.2	Cucumber (Gy14) v1	cgymedB431
MELO3C031645.2	Cucurbita maxima (Rimu)	cmamedB344
MELO3C031645.2	Cucurbita maxima (Rimu)	cmamedB432
MELO3C031645.2	Cucurbita maxima (Rimu)	cmamedB436
MELO3C031645.2	Cucurbita maxima (Rimu)	cmamedB661
MELO3C031645.2	Cucurbita moschata (Rifu)	cmomedB331
MELO3C031645.2	Cucurbita moschata (Rifu)	cmomedB421
MELO3C031645.2	Cucurbita moschata (Rifu)	cmomedB649
MELO3C031645.2	Cucurbita pepo (Zucchini)	cpemedB047
MELO3C031645.2	Cucurbita pepo (Zucchini)	cpemedB050
MELO3C031645.2	Cucurbita pepo (Zucchini)	cpemedB233
MELO3C031645.2	Cucurbita pepo (Zucchini)	cpemedB835
MELO3C031645.2	Wild cucumber (PI 183967)	cpimedB246
MELO3C031645.2	Wild cucumber (PI 183967)	cpimedB400
MELO3C031645.2	Cucumber (Chinese Long) v2	cumedB245
MELO3C031645.2	Cucumber (Chinese Long) v2	cumedB392
MELO3C031645.2	Melon (DHL92) v3.6.1	medmedB014
MELO3C031645.2	Melon (DHL92) v3.6.1	medmedB148
MELO3C031645.2	Bottle gourd (USVL1VR-Ls)	lsimedB039
MELO3C031645.2	Bottle gourd (USVL1VR-Ls)	lsimedB392
MELO3C031645.2	Watermelon (Charleston Gray)	medwcgB412
MELO3C031645.2	Watermelon (Charleston Gray)	medwcgB416
MELO3C031645.2	Watermelon (Charleston Gray)	medwcgB430
MELO3C031645.2	Watermelon (97103) v1	medwmB459
MELO3C031645.2	Watermelon (97103) v1	medwmB447
MELO3C031645.2	Watermelon (97103) v1	medwmB471
MELO3C031645.2	Silver-seed gourd	carmedB0745
MELO3C031645.2	Silver-seed gourd	carmedB0975
MELO3C031645.2	Cucumber (Chinese Long) v3	cucmedB253
MELO3C031645.2	Cucumber (Chinese Long) v3	cucmedB407
MELO3C031645.2	Cucumber (Chinese Long) v3	cucmedB409
MELO3C031645.2	Watermelon (97103) v2	medwmbB414
MELO3C031645.2	Watermelon (97103) v2	medwmbB423
MELO3C031645.2	Watermelon (97103) v2	medwmbB434
MELO3C031645.2	Watermelon (97103) v2	medwmbB436