MELO3C031594.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031594.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 387757 .. 389164 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACACCTCAGTTTTCCAATAAACGAGACCCAGAATCAAATAGCAACAGACAAAGCGAGAAACGAATGGGGATTGCAAAAATCTAACATCCTATTGAAGAAAACAAACCTAAATGGGAGTGGTATGAGACCTAAACACAAATAAGCAGGATAAATCTCGCCAACATGCGCATTGGGTGGCAGCTAAAGAAACCAAAAACCATAAGGAAAACACACCACTATAAACAATTCGATCAATATCACATCTAGACACCTTAAGGGACTGAAAAGTGAAGAACCCAGGTAATGAAATAGGGAGAAAGGCGAAAGAAGTCACAGTAGGAGCCTTGAAAGCCATACCAGTGAAGTGAAGGATTCGGAAGGTACAAGAATTGGAATATTGGTTGTGAGCGAATCCTTTTGTTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGAACCTCAGAGAGAAGGGGAGAATCAGAGGTGCGTTAAGATATCTTAGAATGAGTTATTTCGATTCGGGCCTTTGTGTGCAGAAGACGAAGCCTCTCTGGGCTGAAACGACGAGGGCTTGAAGGCGGATGGGCTAAATTGGAAGCCGAATCTTCTATCTACTTAAACGTCGTCGTCTTCTTCCCTCGCGAATATTTTCTCTCTTCTCCGTTGCCGGGTTTGTGCGGCGAAATGTCTGAAAAGCCCTTTTTATACCAAAAATAGCTATTCGATTATTTGTTTCTAAAGCTACCCTCCAATTTCCAAATGCATGAAAATAAATATATAATTTTTTTAGGAAAGGGCTTTTCAGACATTTCCCTAAGAGGTCCCCCCCAAGCGAACCAAAGGAAATCAACCCAGATACAGAAAACAAAAGGATTCCCTCACAACCATTGTACCTTCCGAATCCTTCACTTCACTGGTATGGCTTTCAAGGCTCCTACTATGACTTCTTTCGCCTTTTTTCCCTATTTTATTACTTGGGGTCTTCATTTTTCAGTCCCATAGGGTGTTCAGATGTGCTATTGGTTCGTTTGATTTCTTTCTCCTTTTCAGCTCGAATTGCTAATAGTGTTATGTATTTTCCTTCTTTTATGGCTTTTGGTTTCTTTAGCTGCCTCCCGATGCGCACGTTGGCGAGATTTATCCTACTTATTTGTCTTTCTGTCTGATATTACTCCATTCAGGTATGTGTTTTTCAATAGTGTTTTGGGTTTTTGCCCATATTCCTTTCTGGCTTTGTCTTTTGCTATTTGATTCTGATCATTATTTGTTATTCTGTTTGATATTACTCCCATCTAGGTGTGTGTTTTTCACTCTGATCGTTTTAATCTTCCGACTGTGGTTGTCAGCCCGTACAACTCGAATTCTGTCAGCTCTGTCTTGTTTTCTCTCAGAACATTCAACAAACACTTGGAGCTCCTAA

mRNA sequence

ATGAAACACCTCAGTTTTCCAATAAACGAGACCCAGAATCAAATAGCAACAGACAAAGCGAGAAACGAATGGGGATTGCAAAAATCTAACATCCTATTGAAGAAAACAAACCTAAATGGGAGTGGATTCGGAAGGTACAAGAATTGGAATATTGGTTGTGAGCGAATCCTTTTGTTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGAACCTCAGAGAGAAGGGGAGAATCAGAGGTGCAAGACGAAGCCTCTCTGGGCTGAAACGACGAGGGCTTGAAGGCGGATGGGCTAAATTGGAAGCCGAATCTTCTATCTACTTAAACGTCGTCGTCTTCTTCCCTCGCGAATATTTTCTCTCTTCTCCGTTGCCGGGTTTGTGCGGCGAAATGAAAGGGCTTTTCAGACATTTCCCTAAGAGGTCCCCCCCAAGCGAACCAAAGGAAATCAACCCAGATACAGAAAACAAAAGGATTCCCTCACAACCATTGTACCTTCCGAATCCTTCACTTCACTGGTATGGCTTTCAAGGCTCCTACTATGACTTCTTTCGCCTTTTTTCCCTATTTTATTACTTGGGGTCTTCATTTTTCAGTCCCATAGGGTGTTCAGATGTGCTATTGCTGCCTCCCGATGCGCACGTTGGCGAGATTTATCCTACTTATTTGTCTTTCTGTCTGATATTACTCCATTCAGCCCGTACAACTCGAATTCTGTCAGCTCTGTCTTGTTTTCTCTCAGAACATTCAACAAACACTTGGAGCTCCTAA

Coding sequence (CDS)

ATGAAACACCTCAGTTTTCCAATAAACGAGACCCAGAATCAAATAGCAACAGACAAAGCGAGAAACGAATGGGGATTGCAAAAATCTAACATCCTATTGAAGAAAACAAACCTAAATGGGAGTGGATTCGGAAGGTACAAGAATTGGAATATTGGTTGTGAGCGAATCCTTTTGTTTTCTGTATCTGGGTTGATTTCCTTTGGTTCGCTTGGGAACCTCAGAGAGAAGGGGAGAATCAGAGGTGCAAGACGAAGCCTCTCTGGGCTGAAACGACGAGGGCTTGAAGGCGGATGGGCTAAATTGGAAGCCGAATCTTCTATCTACTTAAACGTCGTCGTCTTCTTCCCTCGCGAATATTTTCTCTCTTCTCCGTTGCCGGGTTTGTGCGGCGAAATGAAAGGGCTTTTCAGACATTTCCCTAAGAGGTCCCCCCCAAGCGAACCAAAGGAAATCAACCCAGATACAGAAAACAAAAGGATTCCCTCACAACCATTGTACCTTCCGAATCCTTCACTTCACTGGTATGGCTTTCAAGGCTCCTACTATGACTTCTTTCGCCTTTTTTCCCTATTTTATTACTTGGGGTCTTCATTTTTCAGTCCCATAGGGTGTTCAGATGTGCTATTGCTGCCTCCCGATGCGCACGTTGGCGAGATTTATCCTACTTATTTGTCTTTCTGTCTGATATTACTCCATTCAGCCCGTACAACTCGAATTCTGTCAGCTCTGTCTTGTTTTCTCTCAGAACATTCAACAAACACTTGGAGCTCCTAA

Protein sequence

MKHLSFPINETQNQIATDKARNEWGLQKSNILLKKTNLNGSGFGRYKNWNIGCERILLFSVSGLISFGSLGNLREKGRIRGARRSLSGLKRRGLEGGWAKLEAESSIYLNVVVFFPREYFLSSPLPGLCGEMKGLFRHFPKRSPPSEPKEINPDTENKRIPSQPLYLPNPSLHWYGFQGSYYDFFRLFSLFYYLGSSFFSPIGCSDVLLLPPDAHVGEIYPTYLSFCLILLHSARTTRILSALSCFLSEHSTNTWSS

Homology

[Close]

BLAST of MELO3C031594.2 vs. NCBI nr
Match: KGN56381.1 (hypothetical protein Csa_3G118160 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 3.9e-10
Identity = 50/107 (46.73%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 89  LKRRGLEGGWAKLEAESSIYLNVVVFFPREYFLSSPLP-------------------GLC 148
           L+RRGLE GWAKLEAESSIYLNVVVFFP EYF+SSP+P                   GLC
Sbjct: 47  LRRRGLEDGWAKLEAESSIYLNVVVFFPCEYFISSPVPENMENQSCVKHHIVRSFHSGLC 106

Query: 149 GEMKGLFRHFPKRSPPSEPKEIN---PDTENKRIPSQPLYLPNPSLH 174
            + K   R F K +P  E    N   P +  +R   +PL    P LH
Sbjct: 107 LQKK--TRKFAKLAPAIEDSASNLAHPPSSPRRFSPEPL----PLLH 147

[Close]

BLAST of MELO3C031594.2 vs. TrEMBL
Match: tr|A0A0A0L8E7|A0A0A0L8E7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118160 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-10
Identity = 50/107 (46.73%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 89  LKRRGLEGGWAKLEAESSIYLNVVVFFPREYFLSSPLP-------------------GLC 148
           L+RRGLE GWAKLEAESSIYLNVVVFFP EYF+SSP+P                   GLC
Sbjct: 47  LRRRGLEDGWAKLEAESSIYLNVVVFFPCEYFISSPVPENMENQSCVKHHIVRSFHSGLC 106

Query: 149 GEMKGLFRHFPKRSPPSEPKEIN---PDTENKRIPSQPLYLPNPSLH 174
            + K   R F K +P  E    N   P +  +R   +PL    P LH
Sbjct: 107 LQKK--TRKFAKLAPAIEDSASNLAHPPSSPRRFSPEPL----PLLH 147

The following BLAST results are available for this feature:

BLAST of MELO3C031594.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56381.1	3.9e-10	46.73	hypothetical protein Csa_3G118160 [Cucumis sativus]	[more]

BLAST of MELO3C031594.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031594.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031594.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L8E7\|A0A0A0L8E7_CUCSA	2.6e-10	46.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118160 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031594.2.1	MELO3C031594.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..159

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C031594.2	Csa3G118160	Cucumber (Chinese Long) v2	cumedB223
MELO3C031594.2	CsaV3_3G007640	Cucumber (Chinese Long) v3	cucmedB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031594.2	Cucumber (Gy14) v2	cgybmedB201
MELO3C031594.2	Cucumber (Gy14) v1	cgymedB432
MELO3C031594.2	Cucurbita maxima (Rimu)	cmamedB273
MELO3C031594.2	Cucurbita maxima (Rimu)	cmamedB863
MELO3C031594.2	Cucurbita maxima (Rimu)	cmamedB873
MELO3C031594.2	Cucurbita moschata (Rifu)	cmomedB260
MELO3C031594.2	Cucurbita moschata (Rifu)	cmomedB857
MELO3C031594.2	Cucurbita pepo (Zucchini)	cpemedB693
MELO3C031594.2	Cucurbita pepo (Zucchini)	cpemedB951
MELO3C031594.2	Wild cucumber (PI 183967)	cpimedB224
MELO3C031594.2	Bottle gourd (USVL1VR-Ls)	lsimedB396
MELO3C031594.2	Watermelon (Charleston Gray)	medwcgB416
MELO3C031594.2	Watermelon (97103) v1	medwmB447
MELO3C031594.2	Silver-seed gourd	carmedB0142
MELO3C031594.2	Silver-seed gourd	carmedB0978
MELO3C031594.2	Watermelon (97103) v2	medwmbB423
MELO3C031594.2	Wax gourd	medwgoB542