MELO3C031435.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031435.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionSCY1-like protein 2
Locationchr05 : 17198610 .. 17200093 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAATGGGATTACTGGAAATAAAACATGGTTTTCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTTATTCACCTTGCTATATCTCCGGAGGTATCAATTTTATTTCAACATTTTTTTCCTTTTTCTGGTAGTTTAAATTTTTTTATTAAGTTTCTTGGGAGTATTTGGAGTTTTTTCTAGTATTTCATTTGAGAACTGAAGTGTTGAATGATACAAACACCATACAAATGGAAAGAGAAATTACTTCCCCCTTACCCTCTACTCTAAAATAACAAAGAAGATTGATTAGTTTAATTCCACTCTCATCCAACTTAAAATTAGGGCCTTATCTTCTTATGGGGTGGATTGTTGAGAATTATATATATGTTTATGTATTGTAGGTCAGGCTCGGTTCATTTGGATGCTATCAACTAAACATGGAGTCCTATCTTTAGTAGGAAACTTCTTTGTGGAATTATATATAATATTATATAGTGATAATTTGGTTTATTTTTAGTGGATTTATAATAAGGAAATTGTGATCAAGGAATTGTGATCTAATTTGGGTATTTCTCATTGCAGAGACCTTGTAAATGTTTTTGGAGAGTTTCTTCCAAAAGTCAGTGCTTATAAAGTATAGCGAGTAATTCTTCCTCATACTTCATTATATGTATCAAGGTGTGTTGGGCATAAAACTTTTTAGTGCACATCAATAAACTTTTAAATCCTTTGCAAATGTACGTACCTCTCACTATGTTATAGTTTTATTGCCTCATAATGTTGTTTAGTTTTATTGCCTCACCCAAGTCTCTATTGCATAATACTTTTGTGAAAAATATGGTGTGGCACTCAAATTTTCATCTCTAGTGGCTATTTCGTAATTATGCAAAGCCCATTTTTAGCTTTGAGTTTTGTTATTTGTTGTTGGTTTTGGACTTTGTGTGAAGTTTTGTAATTAATTTAGCTGAGTTTGTGGGCTAAATTTGGTATATGGATGAATTTGTAGATTTCATTTTTAGTGATGAAATTTTGCATTTTGTACTTAAACAGTAGCATAATTTTGTGACTCGTATATGTAAGGCTTTCCATTTGAATACCCTCTACATTTCCAATACCAACCTTAGAAGTTATAGAAAAGAATAATTTACTGCCAAGCTTAGAAGTTACTATTGTTGAAGTGTGTATGTGCTGTGTTGTTGAAGTGAACGTGTATTGTGTTGTTGAAGTGAATGTGTTGTATTGTTGAATCAATTTTGTTTCCTTTTATTTTCTTACTAGGTTTTGCCAGAATCCATTGGAGCAGCGAAGCCATATTTGCAGCAATTCATTGATGTATAGACATTTTTGTAGGTTTGGTAGGAAAATTTATTGTTTAAATATAGTTATTTAAATAGCTTGTTCGTAACAAATCATATATGTACCAACACTTAAAGCGATATTATAAAGTGTATGTTTCTTTATATTAAAGCGTTCACCGTTTCTTTTCATA

mRNA sequence

AGAAATGGGATTACTGGAAATAAAACATGGTTTTCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTTATTCACCTTGCTATATCTCCGGAGTGGATTTATAATAAGGAAATTGTGATCAAGGAATTAGACCTTGTAAATGTTTTTGGAGAGTTTCTTCCAAAAGTCAGTGCTTATAAAGTTTTGCCAGAATCCATTGGAGCAGCGAAGCCATATTTGCAGCAATTCATTGATGTATAGACATTTTTGTAGGTTTGGTAGGAAAATTTATTGTTTAAATATAGTTATTTAAATAGCTTGTTCGTAACAAATCATATATGTACCAACACTTAAAGCGATATTATAAAGTGTATGTTTCTTTATATTAAAGCGTTCACCGTTTCTTTTCATA

Coding sequence (CDS)

ATGGGATTACTGGAAATAAAACATGGTTTTCTTCAACTAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTTATTCACCTTGCTATATCTCCGGAGTGGATTTATAATAAGGAAATTGTGATCAAGGAATTAGACCTTGTAAATGTTTTTGGAGAGTTTCTTCCAAAAGTCAGTGCTTATAAAGTTTTGCCAGAATCCATTGGAGCAGCGAAGCCATATTTGCAGCAATTCATTGATGTATAG

Protein sequence

MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPEWIYNKEIVIKELDLVNVFGEFLPKVSAYKVLPESIGAAKPYLQQFIDV
Homology
[Close]
BLAST of MELO3C031435.2 vs. NCBI nr
Match: XP_016902463.1 (PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902464.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902465.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902466.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902467.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902468.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902469.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo] >XP_016902470.1 PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-09
Identity = 44/82 (53.66%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPEWIYNKEIVIKELDLVNVFGEFLPKVS 60
           MGLLEIK+G LQLAESLNFLHSNA LIH  IS                            
Sbjct: 70  MGLLEIKYGLLQLAESLNFLHSNARLIHCVISS--------------------------- 122

Query: 61  AYKVLPESIGAAKPYLQQFIDV 83
             KVLPESIGA K YLQQFI+V
Sbjct: 130 --KVLPESIGAVKSYLQQFINV 122

[Close]
BLAST of MELO3C031435.2 vs. NCBI nr
Match: XP_004141537.1 (PREDICTED: SCY1-like protein 2 [Cucumis sativus] >KGN52653.1 hypothetical protein Csa_5G648740 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 7.5e-08
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
           MGLLEIKHG LQLAESLNFLHSNAHLIH AISPE
Sbjct: 166 MGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPE 199

[Close]
BLAST of MELO3C031435.2 vs. NCBI nr
Match: XP_008459573.1 (PREDICTED: SCY1-like protein 2 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 7.5e-08
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
           MGLLEIKHG LQLAESLNFLHSNAHLIH AISPE
Sbjct: 166 MGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPE 199

[Close]
BLAST of MELO3C031435.2 vs. NCBI nr
Match: XP_022141750.1 (SCY1-like protein 2 [Momordica charantia])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
           MGLLEIKHG LQ+AESLNFLHSNAHLIH AISPE
Sbjct: 166 MGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPE 199

[Close]
BLAST of MELO3C031435.2 vs. NCBI nr
Match: XP_022973370.1 (SCY1-like protein 2 isoform X4 [Cucurbita maxima] >XP_022973371.1 SCY1-like protein 2 isoform X4 [Cucurbita maxima] >XP_022973372.1 SCY1-like protein 2 isoform X4 [Cucurbita maxima])

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-07
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1  MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
          MGLLEIKHG LQ+AESLNFLHSNAHLIH AISPE
Sbjct: 28 MGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPE 61

[Close]
BLAST of MELO3C031435.2 vs. TAIR10
Match: AT1G22870.1 (Protein kinase family protein with ARM repeat domain)

HSP 1 Score: 60.5 bits (145), Expect = 5.7e-10
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPEWIY 38
           M LLE+KHG LQ+AE+LNFLH+NAHLIH A+SPE ++
Sbjct: 166 MSLLEVKHGLLQIAETLNFLHNNAHLIHRAVSPENVF 202

[Close]
BLAST of MELO3C031435.2 vs. TAIR10
Match: AT1G71410.1 (ARM repeat superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 25/34 (73.53%), Postives = 31/34 (91.18%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
           M LLE+KHG LQ++E+LNFLH+NA+LIH AISPE
Sbjct: 166 MSLLEVKHGLLQISETLNFLHNNANLIHRAISPE 199

[Close]
BLAST of MELO3C031435.2 vs. TrEMBL
Match: tr|A0A1S4E2L5|A0A1S4E2L5_CUCME (putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis melo OX=3656 GN=LOC103498775 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.1e-10
Identity = 44/82 (53.66%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPEWIYNKEIVIKELDLVNVFGEFLPKVS 60
           MGLLEIK+G LQLAESLNFLHSNA LIH  IS                            
Sbjct: 70  MGLLEIKYGLLQLAESLNFLHSNARLIHCVISS--------------------------- 122

Query: 61  AYKVLPESIGAAKPYLQQFIDV 83
             KVLPESIGA K YLQQFI+V
Sbjct: 130 --KVLPESIGAVKSYLQQFINV 122

[Close]
BLAST of MELO3C031435.2 vs. TrEMBL
Match: tr|A0A1S3CAL7|A0A1S3CAL7_CUCME (SCY1-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103498664 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
           MGLLEIKHG LQLAESLNFLHSNAHLIH AISPE
Sbjct: 166 MGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPE 199

[Close]
BLAST of MELO3C031435.2 vs. TrEMBL
Match: tr|A0A0A0KSU8|A0A0A0KSU8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648740 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 32/34 (94.12%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
           MGLLEIKHG LQLAESLNFLHSNAHLIH AISPE
Sbjct: 166 MGLLEIKHGLLQLAESLNFLHSNAHLIHRAISPE 199

[Close]
BLAST of MELO3C031435.2 vs. TrEMBL
Match: tr|A0A2P6PKS8|A0A2P6PKS8_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0251091 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 28/37 (75.68%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPEWIY 38
           MGLLE+KHG LQ+AESL+FLH+NAHLIH AISPE ++
Sbjct: 165 MGLLEVKHGLLQIAESLDFLHNNAHLIHRAISPENVF 201

[Close]
BLAST of MELO3C031435.2 vs. TrEMBL
Match: tr|A0A2I4FRE2|A0A2I4FRE2_9ROSI (SCY1-like protein 2 OS=Juglans regia OX=51240 GN=LOC109001398 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-07
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 1   MGLLEIKHGFLQLAESLNFLHSNAHLIHLAISPE 35
           MGLLE+KHG LQ+AESL+FLH+NAHLIH AISPE
Sbjct: 166 MGLLEVKHGLLQIAESLDFLHNNAHLIHRAISPE 199

The following BLAST results are available for this feature:
BLAST of MELO3C031435.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902463.11.4e-0953.66PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09... [more]
XP_004141537.17.5e-0894.12PREDICTED: SCY1-like protein 2 [Cucumis sativus] >KGN52653.1 hypothetical protei... [more]
XP_008459573.17.5e-0894.12PREDICTED: SCY1-like protein 2 [Cucumis melo][more]
XP_022141750.11.3e-0791.18SCY1-like protein 2 [Momordica charantia][more]
XP_022973370.11.3e-0791.18SCY1-like protein 2 isoform X4 [Cucurbita maxima] >XP_022973371.1 SCY1-like prot... [more]
BLAST of MELO3C031435.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22870.15.7e-1070.27Protein kinase family protein with ARM repeat domain[more]
AT1G71410.11.1e-0873.53ARM repeat superfamily protein[more]
BLAST of MELO3C031435.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031435.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E2L5|A0A1S4E2L5_CUCME9.1e-1053.66putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Cucumis... [more]
tr|A0A1S3CAL7|A0A1S3CAL7_CUCME5.0e-0894.12SCY1-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103498664 PE=4 SV=1[more]
tr|A0A0A0KSU8|A0A0A0KSU8_CUCSA5.0e-0894.12Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G648740 PE=4 SV=1[more]
tr|A0A2P6PKS8|A0A2P6PKS8_ROSCH5.5e-0775.68Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0251091 PE=4... [more]
tr|A0A2I4FRE2|A0A2I4FRE2_9ROSI9.4e-0782.35SCY1-like protein 2 OS=Juglans regia OX=51240 GN=LOC109001398 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005575 cellular_component
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031435.2.1MELO3C031435.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031435.2Cucumber (Gy14) v2cgybmedB115
MELO3C031435.2Cucumber (Gy14) v1cgymedB315
MELO3C031435.2Cucurbita maxima (Rimu)cmamedB190
MELO3C031435.2Cucurbita maxima (Rimu)cmamedB831
MELO3C031435.2Cucurbita moschata (Rifu)cmomedB822
MELO3C031435.2Cucurbita pepo (Zucchini)cpemedB913
MELO3C031435.2Wild cucumber (PI 183967)cpimedB129
MELO3C031435.2Cucumber (Chinese Long) v2cumedB129
MELO3C031435.2Bottle gourd (USVL1VR-Ls)lsimedB123
MELO3C031435.2Watermelon (Charleston Gray)medwcgB362
MELO3C031435.2Cucumber (Chinese Long) v3cucmedB134
MELO3C031435.2Cucumber (Chinese Long) v3cucmedB131
MELO3C031435.2Watermelon (97103) v2medwmbB360