MELO3C031426.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031426.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionTransposase, Ptta/En/Spm, plant
Locationchr05 : 16238506 .. 16240789 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAATTTTGATTTAACTAATTCCTACCCCTACCCCTTAATCCCACGATTTTCCTCCCCCTTCTCAAACATAGCCGCCCCCTTCACCCACCCACTCGATTTCCCTTCTTCTTCTCCTACACCCACCGGCTGTTGACCTCCTCCCTCCTTCCTCCTTCCTCCTTCAACTGTCGTCGGTCCTCCACTTCTCCTATAACCACTGCACCCCCTCTCTGACATTTTCCTTTTCCCTTCTCCAACCGTTGTCAGCCTCCACCTCTCCCACAGCTACAGATGTTGCACCGCTTCTCCACATTTTCCCACAGCCGCTACCACCTCCCCCGATCTCCCACATCCGTCGCCGTCCCCATCCCCATCCCCTGTCTCACATGCTCACAACCTTGCAATTTCCCTCTTTCTCCCATAGCCATGCATACAACGCTTCGTCTTCTCAATAGTCGTCGACATTATCCCATCACACGCTCACAAAAGTTTGGTACATCTTAAACTCTCATTGCATTTGATTTGAAGAAAAAAGTTAACAAATTCTTTTTGTCTAATTCCTTATAAAATAATTTGATACCAAAGTTTATCTTGAATATTTATTATGCAAGGATTTGTTCATTTATTTACTTTATTAACTTTACCACCATGTTAATTAAAAATAAAATTTTTGATTTTGATAGTTTGATTTGTTTTAAGTTGATGCAATCTGATAAGTACTATGAATTGTTGTTATTTGAAATCTAACAAGTATTGTATATGTGAATTTCTATAACTATTCTGCAATTATGGTAGTCATAGATTGTATGGAATATTAGTATGATGATCTTTGTTGAACTTGAATTTCAAGCATGCTTTTCGTGTTGTTTGTTATACAATATGAGTTTGTTATACAATATTATTTCTCTTTTATTTTGGAATTATGAGAAATACTTATTAGATTTCATACATATTATTATATGAAATCTAATAAGGCTTAATTGTGGAAGTGATTTTGAGATATGAGTATGATAATATTTGTTATTATATGAAATCTAACAAGTATTGTATATGTGAATTTCTATGACTATATGCAGTTATTGTAGTAATAGATTTGTATGGAATATTAGTATGATGATGTTTGTTGAACTTGAATTTCAAGCATGCTCTTGGTGTTGTTTGTTATACAATATGAGTTGGGTGGTATTAGTTGATTATTTCTCTTTTGAATTGGAAATAGTAGAAATACTTATAAGATTTCATACATATTATTATATGAAATCTAATAAGACTTAATTTTGGAACTGATTTTGAGATATGAGTATGGTAATATTTGTTATTATGTGAAATCTAATAAGTATTGTATATGTGAATTGCTATGACTACCCTACAGTTATGGTAGTCATAGATTTATATGGAATATTAGTTGGATGATCTTGATCAGCATTTGTGTTAAAGTAATACTTTCAATTTGGTACTTAGGCACCATTATAGGATCTTATATAGTTATCCTTAGGTTTGTGGAAAAAAGTTTCTCTAACTTGTTGCTCTAACTACTACAGGATTTAAATTGATTCATTTTACATCAACGATGAATAAGGATTGGATTAAACTTAGAGATAGATTCTCAAAAGAGTATATTGATGGAGTCGTACAATTCGTGGAAGCGGCAAAGCATCATGTAAATAGAGAAGGACAAACAAGATGCCCATGGAAAAATTCTCACAATGCAAtGTTTCAAACTTTAGCTTCTTTAGTTGATCATGGACTAGTAGATGACATATTAAGGGAACAACCTACTACTGAGAATGATGACAATGAGTTGTTCAAACTTTTAAATGATTTGCAAGGACCAATGAAAGAAGGGGCATATGGTGAAGATGAAAAAGACTTTAGAAATGAGATGCATGAGAACACTAGACAATGGTATACTACAAACATTTTTTAGGAGTTGATAGATGAAGCGTGTAATCCTTTATACTTGGGTTGTACCAATTTTTCTTCATTAAACTTGGTGTTATTGATGCATGTTAAGGTTCTCAATATTTGGAGTAACAAATCTTTTGATTTATTACTAAGTTTGTTGGAAGATGCATTTCCAATTGATACATGTATACCAAATTCTTTTTATGAAGCTAAAAGAAAATTACGTGACTTAGGACTAGGATATGATTCGATTCATGCTTGCAAGTATGACTGCGTTCTATTTTGAAAAAGATATTCTAATTATCAAAGTTGCCCAATGTTTGGTGAGTCTTGATATAAAATAAAAGATGGAAAGAGCAAAAAGATCCCAAACAAGATTTTACATCATTTTCCATTGAT

mRNA sequence

CTAATTTTGATTTAACTAATTCCTACCCCTACCCCTTAATCCCACGATTTTCCTCCCCCTTCTCAAACATAGCCGCCCCCTTCACCCACCCACTCGATTTCCCTTCTTCTTCTCCTACACCCACCGGCTGTTGACCTCCTCCCTCCTTCCTCCTTCCTCCTTCAACTGTCGTCGGTCCTCCACTTCTCCTATAACCACTGCACCCCCTCTCTGACATTTTCCTTTTCCCTTCTCCAACCGTTGTCAGCCTCCACCTCTCCCACAGCTACAGATGTTGCACCGCTTCTCCACATTTTCCCACAGCCGCTACCACCTCCCCCGATCTCCCACATCCGTCGCCGTCCCCATCCCCATCCCCTGTCTCACATGCTCACAACCTTGCAATTTCCCTCTTTCTCCCATAGCCATGCATACAACGCTTCGTCTTCTCAATAGTCGTCGACATTATCCCATCACACGCTCACAAAAGTTTGGATTTAAATTGATTCATTTTACATCAACGATGAATAAGGATTGGATTAAACTTAGAGATAGATTCTCAAAAGAGTATATTGATGGAGTCGTACAATTCGTGGAAGCGGCAAAGCATCATGTAAATAGAGAAGGACAAACAAGATGCCCATGGAAAAATTCTCACAATGCAAtGTTTCAAACTTTAGCTTCTTTAGTTGATCATGGACTAGTAGATGACATATTAAGGGAACAACCTACTACTGAGAATGATGACAATGAGTTGTTCAAACTTTTAAATGATTTGCAAGGACCAATGAAAGAAGGGGCATATGGTGAAGATGAAAAAGACTTTAGAAATGAGATGCATGAGAACACTAGACAATGGTATACTACAAACATTTTTTAGGAGTTGATAGATGAAGCGTGTAATCCTTTATACTTGGGTTGTACCAATTTTTCTTCATTAAACTTGGTGTTATTGATGCATGTTAAGGTTCTCAATATTTGGAGTAACAAATCTTTTGATTTATTACTAAGTTTGTTGGAAGATGCATTTCCAATTGATACATGTATACCAAATTCTTTTTATGAAGCTAAAAGAAAATTACGTGACTTAGGACTAGGATATGATTCGATTCATGCTTGCAAGTATGACTGCGTTCTATTTTGAAAAAGATATTCTAATTATCAAAGTTGCCCAATGTTTGGTGAGTCTTGATATAAAATAAAAGATGGAAAGAGCAAAAAGATCCCAAACAAGATTTTACATCATTTTCCATTGAT

Coding sequence (CDS)

ATGTTGCACCGCTTCTCCACATTTTCCCACAGCCGCTACCACCTCCCCCGATCTCCCACATCCGTCGCCGTCCCCATCCCCATCCCCTGTCTCACATGCTCACAACCTTGCAATTTCCCTCTTTCTCCCATAGCCATGCATACAACGCTTCGTCTTCTCAATAGTCGTCGACATTATCCCATCACACGCTCACAAAAGTTTGGATTTAAATTGATTCATTTTACATCAACGATGAATAAGGATTGGATTAAACTTAGAGATAGATTCTCAAAAGAGTATATTGATGGAGTCGTACAATTCGTGGAAGCGGCAAAGCATCATGTAAATAGAGAAGGACAAACAAGATGCCCATGGAAAAATTCTCACAATGCAAtGTTTCAAACTTTAGCTTCTTTAGTTGATCATGGACTAGTAGATGACATATTAAGGGAACAACCTACTACTGAGAATGATGACAATGAGTTGTTCAAACTTTTAAATGATTTGCAAGGACCAATGAAAGAAGGGGCATATGGTGAAGATGAAAAAGACTTTAGAAATGAGATGCATGAGAACACTAGACAATGGTATACTACAAACATTTTTTAG

Protein sequence

MLHRFSTFSHSRYHLPRSPTSVAVPIPIPCLTCSQPCNFPLSPIAMHTTLRLLNSRRHYPITRSQKFGFKLIHFTSTMNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASLVDHGLVDDILREQPTTENDDNELFKLLNDLQGPMKEGAYGEDEKDFRNEMHENTRQWYTTNIF
Homology
[Close]
BLAST of MELO3C031426.2 vs. NCBI nr
Match: XP_003631174.1 (PREDICTED: uncharacterized protein LOC100852986 [Vitis vinifera])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 24/58 (41.38%), Postives = 43/58 (74.14%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASLVDH 136
           M+K W+ LRDR  KEY++G+  F++ AK+HVN++G++RCP ++  NA ++++  +  H
Sbjct: 1   MDKSWMNLRDRLCKEYVNGIRTFIQVAKNHVNKDGKSRCPCRDCQNAFWKSINDIEIH 58

[Close]
BLAST of MELO3C031426.2 vs. NCBI nr
Match: XP_024953970.1 (uncharacterized protein LOC102619703 [Citrus sinensis])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 40/129 (31.01%), Postives = 68/129 (52.71%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASL----- 137
           M+K W+++ +R  KEY+DGV  F+  A++H+N EG+ RCP +N  N   ++L  +     
Sbjct: 1   MDKSWMRISNRLCKEYVDGVKAFMNLAENHLNEEGKIRCPCRNCQNMELKSLDDVKRHLY 60

Query: 138 -----------VDHGLVDDILR--EQPTTEND--------DNELFKLLNDLQGPMKEGAY 181
                      V HG   D+    + P++ ND        D+E+ ++LN+++GPM+    
Sbjct: 61  RHSMSFSYQRWVFHGEEIDLSSYIQTPSSINDTSHIEEVEDDEMLEMLNEIRGPMQMDC- 120

[Close]
BLAST of MELO3C031426.2 vs. NCBI nr
Match: XP_006469558.1 (uncharacterized protein LOC102623694 isoform X3 [Citrus sinensis] >XP_024951270.1 uncharacterized protein LOC102623694 isoform X3 [Citrus sinensis])

HSP 1 Score: 63.5 bits (153), Expect = 8.9e-07
Identity = 40/129 (31.01%), Postives = 66/129 (51.16%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASL----- 137
           M+K W+++ +R  KEY+DGV  FV  A++H+  EG+ RCP +N  N   ++L  +     
Sbjct: 1   MDKSWMRISNRLCKEYVDGVKAFVNLAENHLIEEGKARCPGRNCQNMELKSLDDVERHLC 60

Query: 138 -----------VDHGLVDDILR--EQPTTEND--------DNELFKLLNDLQGPMKEGAY 181
                      V HG   D+    + P++ ND        D+E+ ++LN++ GPM+    
Sbjct: 61  RHGMSFSYQIWVFHGEEIDLSSYIQTPSSINDTSHIEEVEDDEMLEMLNEIGGPMQMDC- 120

[Close]
BLAST of MELO3C031426.2 vs. NCBI nr
Match: XP_024162762.1 (uncharacterized protein LOC112169901 [Rosa chinensis] >XP_024162763.1 uncharacterized protein LOC112169901 [Rosa chinensis] >XP_024162764.1 uncharacterized protein LOC112169901 [Rosa chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 4.4e-06
Identity = 39/106 (36.79%), Postives = 52/106 (49.06%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCP--------WKNSHNAMFQTL 137
           M+++WI  +D+FS+EY +GV  F+E AKHHVN   +T CP        W+  H A    L
Sbjct: 1   MDREWILKQDKFSEEYKEGVRSFMEVAKHHVNERNETICPCMECLNKRWQPLHVAHVHLL 60

Query: 138 --------ASLVDHGLVDDILREQPTTENDD-----NELFKLLNDL 163
                       DHG   D L    TTE D+     N LF ++ DL
Sbjct: 61  HYGMSIAYMKWTDHGEHGDTL----TTEGDELIEEPNSLFDMIGDL 102

[Close]
BLAST of MELO3C031426.2 vs. NCBI nr
Match: XP_024164049.1 (uncharacterized protein LOC112171038 [Rosa chinensis])

HSP 1 Score: 61.2 bits (147), Expect = 4.4e-06
Identity = 39/106 (36.79%), Postives = 52/106 (49.06%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCP--------WKNSHNAMFQTL 137
           M+++WI  +D+FS+EY +GV  F+E AKHHVN   +T CP        W+  H A    L
Sbjct: 1   MDREWILKQDKFSEEYKEGVRSFMEVAKHHVNERNETICPCMECLNKRWQPLHVAHVHLL 60

Query: 138 --------ASLVDHGLVDDILREQPTTENDD-----NELFKLLNDL 163
                       DHG   D L    TTE D+     N LF ++ DL
Sbjct: 61  HYGMSIAYMKWTDHGEHGDTL----TTEGDELIEEPNSLFDMIGDL 102

[Close]
BLAST of MELO3C031426.2 vs. TrEMBL
Match: tr|A5AGY3|A5AGY3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032667 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 22/58 (37.93%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASLVDH 136
           M++DW+ L +R S++Y++GV  F++ AK H+  + +TRCP ++  NA F  L ++  H
Sbjct: 1   MDRDWMWLPNRLSRDYVEGVKSFIQVAKEHLRWDNKTRCPCRDCQNARFNDLLTIERH 58

[Close]
BLAST of MELO3C031426.2 vs. TrEMBL
Match: tr|A5AEV7|A5AEV7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018031 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.2e-05
Identity = 32/116 (27.59%), Postives = 55/116 (47.41%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASLVDHGL 137
           M++ W++L++R   EY++GV  F++AAK H+  + +TRCP +   N  FQ L  +  H +
Sbjct: 1   MDRSWMQLQNRLCNEYVEGVRTFIQAAKQHLRVDNKTRCPCRQCLNVRFQDLIIVEQHLI 60

Query: 138 -----------------VDDILREQPTTEND-----------DNELFKLLNDLQGP 166
                            V+ +   QP   +D           D+E+   +ND+ GP
Sbjct: 61  RYGFSSSYNRWIHHGDEVEGVSHAQPDMCSDSNGCAINDNYVDDEINDAINDMHGP 116

[Close]
BLAST of MELO3C031426.2 vs. TrEMBL
Match: tr|A0A1S3CDA6|A0A1S3CDA6_CUCME (uncharacterized protein LOC103499390 OS=Cucumis melo OX=3656 GN=LOC103499390 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 24/58 (41.38%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASLVDH 136
           M++ WI L+D+ S EY DGV  F+E A +H++ E  TRCP  N  N  +  L  +  H
Sbjct: 1   MDRSWINLKDQASSEYFDGVANFIEIATNHLDEEEITRCPCSNFLNVNWNRLDVIERH 58

[Close]
BLAST of MELO3C031426.2 vs. TrEMBL
Match: tr|A0A067E2H2|A0A067E2H2_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035760mg PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASLVDH 136
           M++ WI++ +R  KEY+D V  FV   ++H+N E +TRCP +N  N   ++L  +  H
Sbjct: 1   MDRSWIQISNRLCKEYVDSVEAFVNLVENHLNGEEKTRCPCRNCRNMELKSLDDVERH 58

[Close]
BLAST of MELO3C031426.2 vs. TrEMBL
Match: tr|A0A1U7YRD9|A0A1U7YRD9_NICSY (uncharacterized protein LOC104247468 OS=Nicotiana sylvestris OX=4096 GN=LOC104247468 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-04
Identity = 31/112 (27.68%), Postives = 50/112 (44.64%), Query Frame = 0 

Query: 78  MNKDWIKLRDRFSKEYIDGVVQFVEAAKHHVNREGQTRCPWKNSHNAMFQTLASLVDH-- 137
           M+K W++  DR S  Y+ GV  F++ A  H   EG+  CP K  +N   +T   + +H  
Sbjct: 42  MDKTWMRCTDRLSNVYLKGVDDFLQFAFEHTELEGEIPCPCKKCNNVFHKTRDDVREHLI 101

Query: 138 --GLV--------------------DDILREQPTTENDDNELFKLLNDLQGP 166
             G+V                    +D LR++      DN++F ++ D  GP
Sbjct: 102 IFGIVKGYTRWLYHGEFASKEQRTNNDELRQEEVRNEQDNDIFDMIYDAAGP 153

The following BLAST results are available for this feature:
BLAST of MELO3C031426.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_003631174.11.0e-0741.38PREDICTED: uncharacterized protein LOC100852986 [Vitis vinifera][more]
XP_024953970.11.0e-0731.01uncharacterized protein LOC102619703 [Citrus sinensis][more]
XP_006469558.18.9e-0731.01uncharacterized protein LOC102623694 isoform X3 [Citrus sinensis] >XP_024951270.... [more]
XP_024162762.14.4e-0636.79uncharacterized protein LOC112169901 [Rosa chinensis] >XP_024162763.1 uncharacte... [more]
XP_024164049.14.4e-0636.79uncharacterized protein LOC112171038 [Rosa chinensis][more]
BLAST of MELO3C031426.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031426.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031426.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A5AGY3|A5AGY3_VITVI1.4e-0537.93Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032667 PE=4 SV=1[more]
tr|A5AEV7|A5AEV7_VITVI3.2e-0527.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_018031 PE=4 SV=1[more]
tr|A0A1S3CDA6|A0A1S3CDA6_CUCME2.1e-0441.38uncharacterized protein LOC103499390 OS=Cucumis melo OX=3656 GN=LOC103499390 PE=... [more]
tr|A0A067E2H2|A0A067E2H2_CITSI2.1e-0437.93Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035760mg PE=4 SV=1[more]
tr|A0A1U7YRD9|A0A1U7YRD9_NICSY2.1e-0427.68uncharacterized protein LOC104247468 OS=Nicotiana sylvestris OX=4096 GN=LOC10424... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR029480Transpos_assoc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031426.2.1MELO3C031426.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029480Transposase-associated domainPFAMPF13963Transpos_assoccoord: 80..135
e-value: 4.6E-9
score: 36.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031426.2Watermelon (97103) v2medwmbB365
MELO3C031426.2Wax gourdmedwgoB468
MELO3C031426.2Cucumber (Gy14) v2cgybmedB115
MELO3C031426.2Cucumber (Gy14) v1cgymedB317
MELO3C031426.2Cucurbita maxima (Rimu)cmamedB189
MELO3C031426.2Cucurbita moschata (Rifu)cmomedB179
MELO3C031426.2Cucurbita pepo (Zucchini)cpemedB911
MELO3C031426.2Wild cucumber (PI 183967)cpimedB129
MELO3C031426.2Cucumber (Chinese Long) v2cumedB129
MELO3C031426.2Bottle gourd (USVL1VR-Ls)lsimedB121
MELO3C031426.2Watermelon (97103) v1medwmB413
MELO3C031426.2Silver-seed gourdcarmedB0492
MELO3C031426.2Cucumber (Chinese Long) v3cucmedB131