MELO3C031406.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031406.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprotein Ycf2-like
Locationchr05 : 13997483 .. 14000532 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGGGGAAGGGAGAAGTCAAAAGAAGGACAAGTGATCGGTTAAGAGCCGCGTGGATCACTGGTTCTAGAAAATCATTGGCAACAGGAATTCAAAACCTATCGAGTTCTTCTGAGGAGGTACAAATGCATGTTTTCTGTAATTATAAACAAGTTATAGATGTTTATATGTTTTTCTATAAATGTCAGAGAACAGAAGATATCATGGCAGAAGGCTCCAGGGGCAAAAGAGAGAGTCCAGGAACTTCAAAAAAGAGGGTGAGGACTGAAACGAAAAAAGAGAAGGCCACTGTCCAAAAGAAACAGCAGATTAAGAGTTTGGTAAAGTGTAGATCTATTCTCCAATTACTTGTGGTTTGTTAGGTTTCAACTAAGCTTTTATTTATATTGTTCCCTGTTTAGGTTTCGAGGAGGCAAGTTTATAGGGGGAAGGTGAAGGAAAAAAACAAAAAGAGGTTGAAGGAAAGGTATAATAGTCAAACATTTGTTATGGATGAATTATGTACTGTATAAATTCATTGTAAATTTGACAAACAGGATGATACGAAAAGTGAAAGCGAAAAGGAGAACAAAGTACATGAAGAAGAAGAAGTGGAAGAAGATGAACAAGCTGAAGATCAAGAAGATGAAGAAAAATAATATGAAGAAGAACAGGATGAAGAAGAGGAAGACGAGACCATCGTGGGTGAAGATTCGAATTCATCGACGAGTGAAATACCTCCAGATACTAGGAAAAGAAAGAAGGCTGGAGAAAAGGGAAAGAAAGTAAGCAAGTAATTTCATATTGGTGTATGTTATTTTACGTACATACCTCAAATTTTGGTTTTATAAACTAGGTGAAGGCTATTAAAAAGGAAAAAAAGGCAAGAGAAGAAAGAAGGAGAAAGGGAAAAGCCCTAATGAATCTGGAGAAATCTGAGGTAACTATTTCTGTGTATGTGAGTAATTTAGATACTCTGTATTTGTAGTGTTACAGATGTATTGTATGGTACTTCTGTTGTATGTGTTTTGAATATGTGGCTTCTGTCTTTTGTATGTTAGGGTACTTGATTGTATGGGATGTAGTTAATTACAGTGTATGTGTAAATTGGTAATGAAAAGTGTGAATGTGTTGTATGTTATTTTATATTGATAATGTATTCGATTATATATGTTGACTGTCTTTTATGTTGACAGTGTATTTATCGGTTTAGTGCATATGAGATATGTGTATATAGTGCATCCAATCAAGCAAATTTTTTTTATTACAAATGTAAACCATGTTCTGTTACATTGCTACATTGAATGCATTCACAGTCTGAGTTTAATTTGTGGTAGTTACAATATATCTTTAGTGTTAATCAATTATATGTGATAGATATATGTGTGGTTATTGATGATTTTTTCAAATCGATGTTAGAACTCGGTCTACTTGATGTGTTCTGAAAGAAGAAACGAGCCTTTAAAAATCAATCTACACATTAAGAGCACAATAGTAGACAAAATTAAGGAAAATCTTGGAGATAAGCTGATTAATAGGTTTAGGGAGGGCATATTTAGGCACTTTCTAAACCTCTCCATAACAAACCAATCCTCCCAATTGTTGTTGCACCTTATTCAGCGAATGTGCAAACCCAAATCGACTAGTAAGCTTCAATTTCTAATAGGAGGAAGAGTTTTAAGGTTTGGGTTGAGAGAATTTGCGCTTATAACCGGCCTAAAATGCCATGAGATTCCTTATATTAACCATGATGATATAAAGGGTGGTGGGCGGCTAAAAGGGGTATATTTTGAAAATCTTAAAACTGTGATGAGGCAGTACTTGAATGTTATGTTCAATATAAGTACTGCTAGAACTGATGATGATAGGATAAAAATGGCCAAACTGTACTTTCTAGAGAGTTTTTTGATCCCTAAGCAAGAATGTTTAAGTGTAGATTGGGATCATATCATTATGGTAGATGATGATGAAGTATTTGATGGGTACCCGTGGGGTAGAGTTGCTTTTGAACTCTTAGTGGACTTCATGAATAGGGTTGTTTGTAGCAAGGGGCAAACAGGTATTTCTATATGGGGGTTTATTTTCCTCATTCTCGCTTGGGCTTATGAGGTAAACCCAACATTAAGTACTCCGTTCAACTTCTTTGCAACAAGGATTTTCAATGAAGTCCCTAGGATTATAAATTGGGCAGCTGACACACAACCCAAATGGAAGGACTTAAAACAGAAAGTGTTCGATTCGCCAACGGTATGTAAATCTCGTAATTTGTAGTAGTTCATATATTCATAATAGTTTTGTTTATAGAGTATTTTGTTCATTTTTGAAACAGCTTGAAGTGTCTCCAATGCTCGCAACCCCAAATGAAGTGGGAATGCCATTCTTCGCACCATTCATCGAGACAGAAAAAGACATACTCAAAGAAGCAGAGGATGAGCTTCGAAAGACCAAGAATTCTGACCACATAGCCTCTATTTCGCTGAATAGAGGCATGCCGTCTAGAAGTGAGATTAATATCCTGAGGAAAATGGTATAGAAGATAAAGAATAGCCAACAGAGGATGGAGACAAGTGTGGAAGGTATTCTTGAGTTTCTTAAATGTGTGGAGTTGAAAATGAATAATCAATTTAAAGAACTAATGCAGAAGATGAATGGAATAATGAAAGCAATAAGGAGCCAACAATGTAGTTCTTCGGGTGGCCAATACACCCATGAATTTATGGTAAGCATGTTGTGTAGACTTTAATAATATGTGTGCGTGTAACAGAATCTTAACAAATACAGTGTATCTGGTTTGTATTTGTTGCGCAGGGAGCAAGGGCGTTTGAAGAGCACCTTGACAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCGAACGGTGCTTGAAAAAAGGGATGACGATGAAGACAAAGACGGAAAAGGGCTTATGGATGAAAGTCGAGCAAAAAGTTCGAGAGGGCACGATGGTGGTCAATCTAAAGTGGAAAAATCAAAGACACCACCAACAGCTGGAGATAAAGAATCTTCGCAGTATAAGGTAA

mRNA sequence

ATGAAAAAGGGGAAGGGAGAAGTCAAAAGAAGGACAAGTGATCGGTTAAGAGCCGCGTGGATCACTGGTTCTAGAAAATCATTGGCAACAGGAATTCAAAACCTATCGAGTTCTTCTGAGGAGAGAACAGAAGATATCATGGCAGAAGGCTCCAGGGGCAAAAGAGAGAGTCCAGGAACTTCAAAAAAGAGGGATGATACGAAAAGTGAAAGCGAAAAGGAGAACAAAGTACATGAAGAAGAAGAAGTGGAAGAAGATGAACAAGCTGAAGATCAAGAAGATGAAGAAAAATAATATGAAGAAGAACAGGATGAAGAAGAGGAAGACGAGACCATCGTGGGTGAAGATTCGAATTCATCGACGAGTGAAATACCTCCAGATACTAGGAAAAGAAAGAAGGCTGGAGAAAAGGGAAAGAAACAAGGGGCAAACAGGTATTTCTATATGGGGGTTTATTTTCCTCATTCTCGCTTGGGCTTATGAGGTAAACCCAACATTAAGTACTCCGTTCAACTTCTTTGCAACAAGGATTTTCAATGAAGTCCCTAGGATTATAAATTGGGCAGCTGACACACAACCCAAATGGAAGGACTTAAAACAGAAAGTGTTCGATTCGCCAACGCTTGAAGTGTCTCCAATGCTCGCAACCCCAAATGAAGTGGGAATGCCATTCTTCGCACCATTCATCGAGACAGAAAAAGACATACTCAAAGAAGCAGAGGATGAGCTTCGAAAGACCAAGAATTCTGACCACATAGCCTCTATTTCGCTGAATAGAGGCATGCCGTCTAGAAGTGAGATTAATATCCTGAGGAAAATGGTATAGAAGATAAAGAATAGCCAACAGAGGATGGAGACAAGTGTGGAAGAAGATGAATGGAATAATGAAAGCAATAAGGAGCCAACAATGTAGTTCTTCGGGTGGCCAATACACCCATGAATTTATGGGAGCAAGGGCGTTTGAAGAGCACCTTGACAAGGTGGAGGAGGACCAAGAAGAAGATGATGTTGAAGATTTGAACTTGGATTCAAGCAATCGAACGGTGCTTGAAAAAAGGGATGACGATGAAGACAAAGACGGAAAAGGGCTTATGGATGAAAGTCGAGCAAAAAGTTCGAGAGGGCACGATGGTGGTCAATCTAAAGTGGAAAAATCAAAGACACCACCAACAGCTGGAGATAAAGAATCTTCGCAGTATAAGGTAA

Coding sequence (CDS)

ATGAAAAAGGGGAAGGGAGAAGTCAAAAGAAGGACAAGTGATCGGTTAAGAGCCGCGTGGATCACTGGTTCTAGAAAATCATTGGCAACAGGAATTCAAAACCTATCGAGTTCTTCTGAGGAGAGAACAGAAGATATCATGGCAGAAGGCTCCAGGGGCAAAAGAGAGAGTCCAGGAACTTCAAAAAAGAGGGATGATACGAAAAGTGAAAGCGAAAAGGAGAACAAAGTACATGAAGAAGAAGAAGTGGAAGAAGATGAACAAGCTGAAGATCAAGAAGATGAAGAAAAATAA

Protein sequence

MKKGKGEVKRRTSDRLRAAWITGSRKSLATGIQNLSSSSEERTEDIMAEGSRGKRESPGTSKKRDDTKSESEKENKVHEEEEVEEDEQAEDQEDEEK
Homology
[Close]
BLAST of MELO3C031406.2 vs. NCBI nr
Match: XP_008450225.1 (PREDICTED: protein Ycf2-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 8.0e-17
Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MKKGKGEVKRRTSDRLRAAWITGSRKSLATGIQNLSSSSEERTEDIMAEGSRGKRESPGT 60
          MKKGK + K RTSD LRAA ITGSRKSL TGIQNLSSSSEERTE+IMAEGSRGKRESP T
Sbjct: 1  MKKGKRDAKTRTSDWLRAAGITGSRKSLTTGIQNLSSSSEERTENIMAEGSRGKRESPET 60

Query: 61 SKK 64
          SKK
Sbjct: 61 SKK 63

[Close]
BLAST of MELO3C031406.2 vs. TrEMBL
Match: tr|A0A1S3BNT0|A0A1S3BNT0_CUCME (protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.3e-17
Identity = 54/63 (85.71%), Postives = 56/63 (88.89%), Query Frame = 0 

Query: 1  MKKGKGEVKRRTSDRLRAAWITGSRKSLATGIQNLSSSSEERTEDIMAEGSRGKRESPGT 60
          MKKGK + K RTSD LRAA ITGSRKSL TGIQNLSSSSEERTE+IMAEGSRGKRESP T
Sbjct: 1  MKKGKRDAKTRTSDWLRAAGITGSRKSLTTGIQNLSSSSEERTENIMAEGSRGKRESPET 60

Query: 61 SKK 64
          SKK
Sbjct: 61 SKK 63

The following BLAST results are available for this feature:
BLAST of MELO3C031406.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450225.18.0e-1785.71PREDICTED: protein Ycf2-like [Cucumis melo][more]
BLAST of MELO3C031406.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031406.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031406.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BNT0|A0A1S3BNT0_CUCME5.3e-1785.71protein Ycf2-like OS=Cucumis melo OX=3656 GN=LOC103491885 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031406.2.1MELO3C031406.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 79..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031406.2Wax gourdmedwgoB458
MELO3C031406.2Cucumber (Gy14) v2cgybmedB122
MELO3C031406.2Cucumber (Gy14) v1cgymedB460
MELO3C031406.2Cucurbita maxima (Rimu)cmamedB833
MELO3C031406.2Cucurbita moschata (Rifu)cmomedB823
MELO3C031406.2Cucurbita pepo (Zucchini)cpemedB125
MELO3C031406.2Wild cucumber (PI 183967)cpimedB135
MELO3C031406.2Cucumber (Chinese Long) v2cumedB135
MELO3C031406.2Bottle gourd (USVL1VR-Ls)lsimedB125
MELO3C031406.2Watermelon (Charleston Gray)medwcgB366
MELO3C031406.2Silver-seed gourdcarmedB0245
MELO3C031406.2Cucumber (Chinese Long) v3cucmedB137
MELO3C031406.2Watermelon (97103) v2medwmbB366