MELO3C031369.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031369.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr05 : 12025280 .. 12034573 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAGGGAAGCGGAAGTGTCCTGCTGCTGCTAAAAGCAAAGGGAAGGCTAAGGTAGCCGATAAGAAAAAATCTTTCCTTTGCAATGTGAATGGATATTGTAAGAAAAATTACCCTAAATACCTTGCTGAGAAGAAGAATGAAAAAGAAGGTAAATGTGATTTACTTGTCTTAGAAACATATTTAGTGGAAAATGACCAAAATGCTTGGATACTTGATTCAGGAGCCACTTACCATATTTGTTCTTCTTTACAGGAATCTAGTTCCTTCATGCAGCTTGAAAAGGATGAGATGACGCTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGTCAAGCTGTTTTTCAGAAATAGATTCTTGTTTTTAGAAAACTTGTACATAGTTCCTAAAATTAAGAGGAACTTAATTTCTGTTTCTTCACTTATCGAACAATTCTACTCAGTTACTTTTTCTTTGAATGAAGCGTTCATTTCTAGGAATGGTGTACATATTTATTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCGAAAACAATTTTAAATCATAAGATGTTTAAAATTTCTAACACTCAAAATAAAAGGCAAAGAATTTCTCTAAATAACAATACTCATCTTTGGCATTTAAGATTAGGTCATATTAATCTCGATCAGATCGGGATATTGATAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCTTTACCACCATGTGAATCTTGTCTTGAAGAAAAGATGACTAAAAGACCTTTTACTGGAAAAGTTTATAAAGCCAAAGAGCCTCTAGAACTTATACATTTAGACCTCTGTGGTTCGATGAATGTAAAAGCTAGAAGAGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTTATACTTAATGGAGTATAAGTTTAAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTTGTGCTCATTTTCAATTTGATCCACGAATATCTCATCTTGTAGCCGTTAAAAGAATTTTGAAGTACGTTCATGGAACAAATAGGTTTGGAATTTTATACTCTTATGATACAAATCCATCATTAGTTGGATATTGTGATGCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGGTATGGAGGAGATGATGCTGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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mRNA sequence

ATGAAAGGAGGGAAGCGGAAGTGTCCTGCTGCTGCTAAAAGCAAAGGGAAGGCTAAGGTAGCCGATAAGAAAAAATCTTTCCTTTGCAATGTGAATGGATATTGTAAGAAAAATTACCCTAAATACCTTGCTGAGAAGAAGAATGAAAAAGAAGGTAAATGTGATTTACTTGTCTTAGAAACATATTTAGTGGAAAATGACCAAAATGCTTGGATACTTGATTCAGGAGCCACTTACCATATTTGTTCTTCTTTACAGGAATCTAGTTCCTTCATGCAGCTTGAAAAGGATGAGATGACGCTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGTCAAGCTGTTTTTCAGAAATAGATTCTTGTTTTTAGAAAACTTGTACATAGTTCCTAAAATTAAGAGGAACTTAATTTCTGTTTCTTCACTTATCGAACAATTCTACTCAGTTACTTTTTCTTTGAATGAAGCGTTCATTTCTAGGAATGGTGTACATATTTATTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCGAAAACAATTTTAAATCATAAGATGTTTAAAATTTCTAACACTCAAAATAAAAGGCAAAGAATTTCTCTAAATAACAATACTCATCTTTGGCATTTAAGATTAGGTCATATTAATCTCGATCAGATCGGGATATTGATAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCTTTACCACCATGTGAATCTTGTCTTGAAGAAAAGATGACTAAAAGACCTTTTACTGGAAAAGTTTATAAAGCCAAAGAGCCTCTAGAACTTATACATTTAGACCTCTGTGGTTCGATGAATGTAAAAGCTAGAAGAGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTTATACTTAATGGAGTATAAGTTTAAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTTGTGCTCATTTTCAATTTGATCCACGAATATCTCATCTTGTAGCCGTTAAAAGAATTTTGAAGTACGTTCATGGAACAAATAGGTTTGGAATTTTATACTCTTATGATACAAATCCATCATTAGTTGGATATTGTGATGCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGAGGACCTTCTTCTCATAAACCAAAAGGGATGAAAATGATTCCTTCACGACGCCCTTTTGGAAAATCTACAAGAACAAGTAAGTCTCCAAACACCAATGACTCTAAAACCTCCATGCACTCGAACCCCTTTAATCATCTAGATATTCCTTGCTCTTCTAGTCCTGAACAATCAAACTCTCATTCTGATACGGACTCTAATGAAAGGGATAATATAATTCCTATTAATGAACCTTCTTATAAAACTCCATATGAAGTTTCTGTTGATGAATTTGTGGCTATTGAATCTATAAATGATTCTATGGAAAGTGAATTGGTTGAAAATATGTTCAATGATGTTCATGTTGATAACTCACTAATTTTTTATAATAGTAATGTCTCTGCTGATGATCTTGATGAAAATAGTGATGAATATGATAATATGCTTAATGAATCTGCTAATGTTCCTATTGATCCTTCAAATGAATCAAATGGTGCCTACCAAAGAATACCAAATGTGTCTGAGTCTATACTTGATCCTTCTAAATCAATTCCTAATACTAATCCAACCTGCCCTAAAAACTCTTTTGATCCTAGTCCTGTTGAACAAAACTATGAGGAATCTCCTAATTCTAAAAAATCCATTAAAAAATCCTCTAAAGGGCCTAAAATAGTCACCGCAAGCATCCTTTTTCATAAATATCCAGAAAATGTATCCGATCAAGATGCCCCAGGTCCTACTACCAAAACCTTGACCTTAAGATACAGACTACTCCAGAGATCCCATGACCTAGACATACAACATACAGTTCGGCCTCCTACAACTCCTAATTCTTCAGATACAGAACACATAAATACCTCTCCAGAAGGCTTTCTTATCCCATTTGCCTTAACTTCAAGGATCATCAACATTTTATTTGATGAGTATTGTTTCCTGAATAGCACGATCAATTCTCTGACAGAATGGAGGACTGAGAGGAAGTTCGTTACACTTCAAGGCATTCTTCAAAGGCGTATCTCAAGCTCCCAGTTCGTGAAGAATCTTTACGAAGGTTGGACCATAAACATGTTGTTCATTAAAAGAGCAAATGATAATTTGATCCAATCGGTGTTATAGACACCTTAGAAGGATTAACTTACTATTATTGATCTACATCCATGGATACACAAATATATCTACAGTGAGAAGAGTTCAATTGTGAGTATTTAGTAAAGTGTACACACAATTAACGAATATTGATTGATGTGGTTAATGAGTTTAGCCAATTAATCTTATATAGTTAGGTCTTTCCTAGCTCGTAAAAGGTAATGAGGTTATTATATATTAATAGTAATTTGAAATTTACTTAGGGAATT

Coding sequence (CDS)

ATGAAAGGAGGGAAGCGGAAGTGTCCTGCTGCTGCTAAAAGCAAAGGGAAGGCTAAGGTAGCCGATAAGAAAAAATCTTTCCTTTGCAATGTGAATGGATATTGTAAGAAAAATTACCCTAAATACCTTGCTGAGAAGAAGAATGAAAAAGAAGGTAAATGTGATTTACTTGTCTTAGAAACATATTTAGTGGAAAATGACCAAAATGCTTGGATACTTGATTCAGGAGCCACTTACCATATTTGTTCTTCTTTACAGGAATCTAGTTCCTTCATGCAGCTTGAAAAGGATGAGATGACGCTCAAGGTTGGAACGGGAGATGTCATTTCAGCTCGTGCAGTGGGAGATGTCAAGCTGTTTTTCAGAAATAGATTCTTGTTTTTAGAAAACTTGTACATAGTTCCTAAAATTAAGAGGAACTTAATTTCTGTTTCTTCACTTATCGAACAATTCTACTCAGTTACTTTTTCTTTGAATGAAGCGTTCATTTCTAGGAATGGTGTACATATTTATTCGGCTAAGCTTGAAAACAACTTGTATGTATTAAGACCTAATGAAGCGAAAACAATTTTAAATCATAAGATGTTTAAAATTTCTAACACTCAAAATAAAAGGCAAAGAATTTCTCTAAATAACAATACTCATCTTTGGCATTTAAGATTAGGTCATATTAATCTCGATCAGATCGGGATATTGATAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCTTTACCACCATGTGAATCTTGTCTTGAAGAAAAGATGACTAAAAGACCTTTTACTGGAAAAGTTTATAAAGCCAAAGAGCCTCTAGAACTTATACATTTAGACCTCTGTGGTTCGATGAATGTAAAAGCTAGAAGAGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTTATACTTAATGGAGTATAAGTTTAAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTTGTGCTCATTTTCAATTTGATCCACGAATATCTCATCTTGTAGCCGTTAAAAGAATTTTGAAGTACGTTCATGGAACAAATAGGTTTGGAATTTTATACTCTTATGATACAAATCCATCATTAGTTGGATATTGTGATGCGATGTTTGATCTCTTCGTAGTCCAAAAATCTGCCAAGGACATCTGGAGCACCCTGGAATCACGAGGACCTTCTTCTCATAAACCAAAAGGGATGAAAATGATTCCTTCACGACGCCCTTTTGGAAAATCTACAAGAACAAGTAAGTCTCCAAACACCAATGACTCTAAAACCTCCATGCACTCGAACCCCTTTAATCATCTAGATATTCCTTGCTCTTCTAGTCCTGAACAATCAAACTCTCATTCTGATACGGACTCTAATGAAAGGGATAATATAATTCCTATTAATGAACCTTCTTATAAAACTCCATATGAAGTTTCTGTTGATGAATTTGTGGCTATTGAATCTATAAATGATTCTATGGAAAGTGAATTGGTTGAAAATATGTTCAATGATGTTCATGTTGATAACTCACTAATTTTTTATAATAGTAATGTCTCTGCTGATGATCTTGATGAAAATAGTGATGAATATGATAATATGCTTAATGAATCTGCTAATGTTCCTATTGATCCTTCAAATGAATCAAATGGTGCCTACCAAAGAATACCAAATGTGTCTGAGTCTATACTTGATCCTTCTAAATCAATTCCTAATACTAATCCAACCTGCCCTAAAAACTCTTTTGATCCTAGTCCTGTTGAACAAAACTATGAGGAATCTCCTAATTCTAAAAAATCCATTAAAAAATCCTCTAAAGGGCCTAAAATAGTCACCGCAAGCATCCTTTTTCATAAATATCCAGAAAATGTATCCGATCAAGATGCCCCAGGTCCTACTACCAAAACCTTGACCTTAAGATACAGACTACTCCAGAGATCCCATGACCTAGACATACAACATACAGTTCGGCCTCCTACAACTCCTAATTCTTCAGATACAGAACACATAAATACCTCTCCAGAAGGCTTTCTTATCCCATTTGCCTTAACTTCAAGGATCATCAACATTTTATTTGATGAGTATTGTTTCCTGAATAGCACGATCAATTCTCTGACAGAATGGAGGACTGAGAGGAAGTTCGTTACACTTCAAGGCATTCTTCAAAGGCGTATCTCAAGCTCCCAGTTCGTGAAGAATCTTTACGAAGGTTGGACCATAAACATGTTGTTCATTAAAAGAGCAAATGATAATTTGATCCAATCGGTGTTATAG

Protein sequence

MKGGKRKCPAAAKSKGKAKVADKKKSFLCNVNGYCKKNYPKYLAEKKNEKEGKCDLLVLETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKLFFRNRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSLNEAFISRNGVHIYSAKLENNLYVLRPNEAKTILNHKMFKISNTQNKRQRISLNNNTHLWHLRLGHINLDQIGILIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYFISFIDDYLYLMEYKFKALEKFKEYKAEVCAHFQFDPRISHLVAVKRILKYVHGTNRFGILYSYDTNPSLVGYCDAMFDLFVVQKSAKDIWSTLESRGPSSHKPKGMKMIPSRRPFGKSTRTSKSPNTNDSKTSMHSNPFNHLDIPCSSSPEQSNSHSDTDSNERDNIIPINEPSYKTPYEVSVDEFVAIESINDSMESELVENMFNDVHVDNSLIFYNSNVSADDLDENSDEYDNMLNESANVPIDPSNESNGAYQRIPNVSESILDPSKSIPNTNPTCPKNSFDPSPVEQNYEESPNSKKSIKKSSKGPKIVTASILFHKYPENVSDQDAPGPTTKTLTLRYRLLQRSHDLDIQHTVRPPTTPNSSDTEHINTSPEGFLIPFALTSRIINILFDEYCFLNSTINSLTEWRTERKFVTLQGILQRRISSSQFVKNLYEGWTINMLFIKRANDNLIQSVL

Homology

[Close]

BLAST of MELO3C031369.2 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 370.9 bits (951), Expect = 1.0e-98
Identity = 196/329 (59.57%), Postives = 252/329 (76.60%), Query Frame = 0


Query: 2   KGGKRKCPAAAKSKGKAKVADKKKSFLCNVNGYCKKNYPKYLAEKKNEK--EGKCDLLVL 61
           K GK K P  +K K   K ADK K F CN +G+ K+N PKYLAEKK EK  +GK DLLV+
Sbjct: 233 KKGKGKAPNTSKVK---KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDLLVV 292

Query: 62  ETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKL 121
           ET LVE D + WILDSGAT HIC S QE+SS+ +L++ E+TLKVGTG+V+SA AVGD+ L
Sbjct: 293 ETCLVECDASTWILDSGATNHICFSFQETSSWKKLKEGEITLKVGTGEVVSAEAVGDLTL 352

Query: 122 FFRNRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSLNEAFISRNGVHIYSAKLENNL 181
           FF++R+L L+++  VP +KRNLIS++ ++E  Y+++F +NE FI   G+ I SA  ENNL
Sbjct: 353 FFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRENNL 412

Query: 182 YVLRPNEAKTILNHKMFKISNTQNKRQRISLNNNTHLWHLRLGHINLDQIGILIKNGLLN 241
           Y LRP  A  +LN +MF+   TQNK+Q++S  +N +LWHLRLGHINL++I  L+K+G+LN
Sbjct: 413 YKLRPTRANVVLNTEMFRTLETQNKKQKVS--SNAYLWHLRLGHINLNRIERLVKSGILN 472

Query: 242 ELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYFISFI 301
           +LED+SLPPCESCLE KMTKR FTGK  +AK PLEL+H DLCG MNVKAR G+EYFISFI
Sbjct: 473 QLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFI 532

Query: 302 DDY-----LYLMEYKFKALEKFKEYKAEV 324
           DD+     +YL+ +K ++ EKFKEYKAEV
Sbjct: 533 DDFSRYGHVYLLHHKSESFEKFKEYKAEV 556

[Close]

BLAST of MELO3C031369.2 vs. NCBI nr
Match: AMY96445.1 (gag/pol protein [Momordica dioica])

HSP 1 Score: 302.0 bits (772), Expect = 5.7e-78
Identity = 158/307 (51.47%), Postives = 218/307 (71.01%), Query Frame = 0


Query: 27  FLCNVNGYCKKNYPKYLAEKKNEK--EGKCDLLVLETYLVENDQNAWILDSGATYHICSS 86
           F CN  G+ K+N PKYLA+KK EK   GK DLLV++  LVE D +AW+ D+G+  HIC+S
Sbjct: 261 FHCNEMGHWKRNCPKYLADKKAEKATSGKYDLLVIDVCLVECDSSAWVFDTGSVAHICNS 320

Query: 87  LQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKLFFRNRFLF-LENLYIVPKIKRNLIS 146
            QE+ +  +L++ E+T++VG G  + A AVGD+ LFF++R++  L N Y+VP +KRNLIS
Sbjct: 321 KQETRNKRRLKEGEITMRVGNGSKVDAEAVGDLTLFFQDRYVMNLNNCYLVPLMKRNLIS 380

Query: 147 VSSLIEQFYSVTFSLNEAFISRNGVHIYSAKLENNLYVLRPNEAKTILNHKMFKISNTQN 206
           ++ ++E  Y+++F +NE FI   G+ I  A +    Y LRP  A  +LN        TQN
Sbjct: 381 IACILEHIYTISFEVNEVFILCKGIQICHAPIVRGFYKLRPTRANVVLNTTHIHNLETQN 440

Query: 207 KRQRISLNNNT--HLWHLRLGHINLDQIGILIKNGLLNELEDDSLPPCESCLEEKMTKRP 266
           K+Q    NN++  +LWHLRLGHINL++I  L K+GLL +LED SLPPCESCLE KMTKRP
Sbjct: 441 KKQ----NNDSAMYLWHLRLGHINLNRIEKLHKDGLLEQLEDFSLPPCESCLEGKMTKRP 500

Query: 267 FTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYFISFIDD-----YLYLMEYKFKALEKF 324
           FTGK  +A + LELIH D+CG M+VKAR G++YF+SF DD     Y+YL+++K ++ EKF
Sbjct: 501 FTGKGLRASDLLELIHTDVCGPMSVKARGGYQYFLSFTDDLSRYGYVYLLKHKSESFEKF 560

[Close]

BLAST of MELO3C031369.2 vs. NCBI nr
Match: EXB35423.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis])

HSP 1 Score: 273.9 bits (699), Expect = 1.7e-69
Identity = 144/275 (52.36%), Postives = 196/275 (71.27%), Query Frame = 0


Query: 23  KKKSFLCNVNGYCKKNYPKYLAE-KKNEKEGKCDLLVLETYLVENDQNAWILDSGATYHI 82
           K K F CN  G+ K+N  KYL E KK +++GK DL VLE  LVE D + WI+DSGAT H+
Sbjct: 156 KGKCFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLPVLEICLVEGDTSTWIIDSGATNHV 215

Query: 83  CSSLQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKLFFR-NRFLFLENLYIVPKIKRN 142
           C SLQ  SS+ +L   +  +KVG G  ++A+AVG+V+L FR N+FL L N+Y +P I+RN
Sbjct: 216 CFSLQSLSSYTELADGDYMIKVGNGARVTAKAVGEVRLHFRENKFLVLNNVYFIPDIRRN 275

Query: 143 LISVSSLIEQFYSVTFSLNEAFISRNGVHIYSAKLENNLYVLRPNEAKTILNHKMFKISN 202
           LIS+S L EQF+ V F  +   ISRNG++IYS +L++ LY ++P    ++LN +MF+++ 
Sbjct: 276 LISMSKLFEQFFKVYFVNDFVHISRNGLNIYSGRLDDGLYCIKP-IPNSLLNTEMFRVAE 335

Query: 203 TQNKRQRISLNNNTHLWHLRLGHINLDQIGILIKNGLLNELEDDSLPPCESCLEEKMTKR 262
            +NK+Q+IS  NNT+LWHL LGHINL++I  L+K+G L EL    L  C SCLE KMTKR
Sbjct: 336 PKNKKQKISHENNTYLWHLGLGHINLNRIERLVKDGPLRELTVGELLVCRSCLEGKMTKR 395

Query: 263 PFTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYF 296
           PFT K   A +PL+ IHLD+CG +NV+AR G+EY+
Sbjct: 396 PFTAKGKIATKPLQPIHLDVCGPLNVQARGGYEYY 429

[Close]

BLAST of MELO3C031369.2 vs. NCBI nr
Match: CAN77149.1 (hypothetical protein VITISV_019364 [Vitis vinifera])

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-53
Identity = 143/339 (42.18%), Postives = 201/339 (59.29%), Query Frame = 0


Query: 2   KGGKRKCPAAAKSKGKAKVAD------KKKSFLCNVNGYCKKNYPKYLAEKKNEKEGKCD 61
           K GK+K      + G A   +      K K F C    + K   P +LA+KK +      
Sbjct: 539 KKGKKKKNVKPNNNGAANGVNGVVKKPKGKCFHCKQPSHWKLQCPTWLAKKK-QGTSPFH 598

Query: 62  LLVLETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVG 121
           LLV+ET L     + W +D GAT H+C+SLQ      QL K E+ + +G G  ++  AVG
Sbjct: 599 LLVVETCLAVLTTHQWCVDLGATNHVCNSLQGFQETRQLSKGEVNIFLGNGSEVAVLAVG 658

Query: 122 DVKLFFR-NRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSL---NEAFISRNGVHIY 181
           ++ L F+ NR LFL+N+  VP I+RNLI +SSL +  YSV F+    +   I      I 
Sbjct: 659 NIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVCFNEFYDDSVVIKFREQMIC 718

Query: 182 SAKLENNLYVLRPNEAKTILNHKM--FKISNTQNKRQRISLNNNTHLWHLRLGHINLDQI 241
           S  L ++LY+L+      + N ++  F I     +++ I L + T+LWHLRLGHINLD+I
Sbjct: 719 SGSLIDSLYILKVTPELQLTNSEVNNFDIVAPLKRKRPIEL-SYTYLWHLRLGHINLDRI 778

Query: 242 GILIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKAR 301
            +L+K+G L+ L+ ++LP CESCLE KMTKRPF  K  +A + LELIH DLCG M+V+AR
Sbjct: 779 SLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSDLCGPMSVQAR 838

Query: 302 RGFEYFISFIDD-----YLYLMEYKFKALEKFKEYKAEV 324
            GFEYF++F DD     Y+YL+  K +  EKFK +KAE+
Sbjct: 839 GGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEM 875

[Close]

BLAST of MELO3C031369.2 vs. NCBI nr
Match: CAN65627.1 (hypothetical protein VITISV_032735 [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 4.1e-52
Identity = 143/338 (42.31%), Postives = 197/338 (58.28%), Query Frame = 0


Query: 2   KGGKRKCPAAAKSKGKAKVAD------KKKSFLCNVNGYCKKNYPKYLAEKKNEKEGKCD 61
           K GK+K      + G     +      K K F C   G+ K   P +LA+KK +      
Sbjct: 187 KKGKKKKNVKLNNNGATNGVNGVVKKPKGKCFHCKQPGHWKLQCPTWLAKKK-QGTSPFH 246

Query: 62  LLVLETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVG 121
           LLV+ET L     + W +DSGAT H+C+SLQ      QL K E+ + +G G  ++  AVG
Sbjct: 247 LLVVETCLAVLTTHQWCVDSGATNHVCNSLQGFQETRQLSKGEVNIFLGDGTEVAVLAVG 306

Query: 122 DVKLFFR-NRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSL---NEAFISRNGVHIY 181
           ++ L F+ NR L L+N+  VP I+RNLISVSSL +  YSV F+    +   I      I 
Sbjct: 307 NIALNFKNNRILSLKNVLYVPSIRRNLISVSSLSKNGYSVCFNEFYDDSVVIKFREQIIC 366

Query: 182 SAKLENNLYVLRPNEAKTILNHKM--FKISNTQNKRQRISLNNNTHLWHLRLGHINLDQI 241
           S  L + LY+L+      + N ++  F I     ++  I L + T+LWHLRLGHINLD+I
Sbjct: 367 SGSLIDGLYILKVTPELQLTNSEVNNFDIVAPLKRKCPIEL-SYTYLWHLRLGHINLDRI 426

Query: 242 GILIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKAR 301
            +L+K+G L+ L+ ++LP CESCLE KMT RPF  K  +A + LELIH DLCG M+V+AR
Sbjct: 427 SLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLELIHSDLCGPMSVQAR 486

Query: 302 RGFEYFISFIDD-----YLYLMEYKFKALEKFKEYKAE 323
            GFEYF++F  D     Y+YL+  K +  EKFK +KAE
Sbjct: 487 GGFEYFVTFTYDYSRYGYIYLLRRKSECFEKFKAFKAE 522

[Close]

BLAST of MELO3C031369.2 vs. TAIR10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-07
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 212 NNTHLWHLRLGHINLDQIGILIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKE 271
           + T LWH RL H++   + +L+K G L+  +  SL  CE C+  K  +  F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 272 PLELIHLDLCGSMNV 287
           PL+ +H DL G+ +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

[Close]

BLAST of MELO3C031369.2 vs. Swiss-Prot
Match: sp|Q9ZT94|POLR2_ARATH (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.3e-14
Identity = 83/326 (25.46%), Postives = 138/326 (42.33%), Query Frame = 0


Query: 28  LCNVNGYCKKNYPK--YLAEKKNEKEG---------KCDLLVLETYLVENDQNAWILDSG 87
           +C+V G+  K  P+        N+++          + +L V   Y    + N W+LDSG
Sbjct: 260 ICSVQGHSAKRCPQLHQFQSTTNQQQSTSPFTPWQPRANLAVNSPY----NANNWLLDSG 319

Query: 88  ATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKLFFRNRFLFLENLYIVPK 147
           AT+HI S    + SF Q       + +  G  I     G   L   +R L L  +  VP 
Sbjct: 320 ATHHITSDF-NNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLDLNKVLYVPN 379

Query: 148 IKRNLISVSSLIE------QFYSVTFSLNEAFISRNGVHIYSAKLENNLY--VLRPNEAK 207
           I +NLISV  L        +F+  +F + +      GV +   K ++ LY   +  ++A 
Sbjct: 380 IHKNLISVYRLCNTNRVSVEFFPASFQVKDL---NTGVPLLQGKTKDELYEWPIASSQAV 439

Query: 208 TILNHKMFKISNTQNKRQRISLNNNTHLWHLRLGHINLDQIGILIKNGLLNELE-DDSLP 267
           ++      K +++               WH RLGH +L  +  +I N  L  L     L 
Sbjct: 440 SMFASPCSKATHSS--------------WHSRLGHPSLAILNSVISNHSLPVLNPSHKLL 499

Query: 268 PCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYFISFIDDY----- 327
            C  C   K  K PF+     + +PLE I+ D+  S  + +   + Y++ F+D +     
Sbjct: 500 SCSDCFINKSHKVPFSNSTITSSKPLEYIYSDVWSS-PILSIDNYRYYVIFVDHFTRYTW 559

Query: 328 LYLMEYKFKALEKFKEYKAEVCAHFQ 329
           LY ++ K +  + F  +K+ V   FQ
Sbjct: 560 LYPLKQKSQVKDTFIIFKSLVENRFQ 562

[Close]

BLAST of MELO3C031369.2 vs. Swiss-Prot
Match: sp|Q94HW2|POLR1_ARATH (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.1e-14
Identity = 74/272 (27.21%), Postives = 114/272 (41.91%), Query Frame = 0


Query: 69  NAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKLFFRNRFLFL 128
           N W+LDSGAT+HI S     S        +  + V  G  I     G   L  ++R L L
Sbjct: 329 NNWLLDSGATHHITSDFNNLSLHQPYTGGD-DVMVADGSTIPISHTGSTSLSTKSRPLNL 388

Query: 129 ENLYIVPKIKRNLISVSSLIE------QFYSVTFSLNEAFISRNGVHIYSAKLENNLYVL 188
            N+  VP I +NLISV  L        +F+  +F + +      GV +   K ++ LY  
Sbjct: 389 HNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDL---NTGVPLLQGKTKDELY-- 448

Query: 189 RPNEAKTILNHKMFKISNTQNKRQRISLNNNTHLWHLRLGHINLDQIGILIKNGLLNELE 248
              E     +  +   ++  +K    S       WH RLGH     +  +I N  L+ L 
Sbjct: 449 ---EWPIASSQPVSLFASPSSKATHSS-------WHARLGHPAPSILNSVISNYSLSVLN 508

Query: 249 -DDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYFISFIDD 308
                  C  CL  K  K PF+     +  PLE I+ D+  S  + +   + Y++ F+D 
Sbjct: 509 PSHKFLSCSDCLINKSNKVPFSQSTINSTRPLEYIYSDVWSS-PILSHDNYRYYVIFVDH 568

Query: 309 Y-----LYLMEYKFKALEKFKEYKAEVCAHFQ 329
           +     LY ++ K +  E F  +K  +   FQ
Sbjct: 569 FTRYTWLYPLKQKSQVKETFITFKNLLENRFQ 583

[Close]

BLAST of MELO3C031369.2 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-13
Identity = 76/337 (22.55%), Postives = 146/337 (43.32%), Query Frame = 0


Query: 10  AAAKSKGKAKVADKKKSFLCNVNGYCKKNYPKYLAEKKNEKEGKCD-------------- 69
           A  KSK ++K +  +  + CN  G+ K++ P     K      K D              
Sbjct: 217 ARGKSKNRSK-SRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDXXXXXXXXXXXXX 276

Query: 70  ---LLVLETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISAR 129
                  E   +   ++ W++D+ A++H  ++         +  D  T+K+G        
Sbjct: 277 XXXXXXEECMHLSGPESEWVVDTAASHH--ATPVRDLFCRYVAGDFGTVKMGNTSYSKIA 336

Query: 130 AVGDVKLFFR-NRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSLNEAFISRNGVHIY 189
            +GD+ +       L L+++  VP ++ NLIS  +L    Y   F+  +  +++  + I 
Sbjct: 337 GIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIA 396

Query: 190 SAKLENNLYVLRPNEAKTILNHKMFKISNTQNKRQRISLNNNTHLWHLRLGHINLDQIGI 249
                  LY       +  LN    +IS                LWH R+GH++   + I
Sbjct: 397 KGVARGTLYRTNAEICQGELNAAQDEIS--------------VDLWHKRMGHMSEKGLQI 456

Query: 250 LIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKARRG 309
           L K  L++  +  ++ PC+ CL  K  +  F     +    L+L++ D+CG M +++  G
Sbjct: 457 LAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGG 516

Query: 310 FEYFISFIDD-----YLYLMEYKFKALEKFKEYKAEV 324
            +YF++FIDD     ++Y+++ K +  + F+++ A V
Sbjct: 517 NKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALV 536

[Close]

BLAST of MELO3C031369.2 vs. Swiss-Prot
Match: sp|P93293|M300_ARATH (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-06
Identity = 26/75 (34.67%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 212 NNTHLWHLRLGHINLDQIGILIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKE 271
           + T LWH RL H++   + +L+K G L+  +  SL  CE C+  K  +  F+   +  K 
Sbjct: 67  DETRLWHSRLAHMSQRGMELLVKKGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKN 126

Query: 272 PLELIHLDLCGSMNV 287
           PL+ +H DL G+ +V
Sbjct: 127 PLDYVHSDLWGAPSV 141

[Close]

BLAST of MELO3C031369.2 vs. TrEMBL
Match: tr|E2GK51|E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 6.7e-99
Identity = 196/329 (59.57%), Postives = 252/329 (76.60%), Query Frame = 0


Query: 2   KGGKRKCPAAAKSKGKAKVADKKKSFLCNVNGYCKKNYPKYLAEKKNEK--EGKCDLLVL 61
           K GK K P  +K K   K ADK K F CN +G+ K+N PKYLAEKK EK  +GK DLLV+
Sbjct: 233 KKGKGKAPNTSKVK---KNADKGKCFHCNQDGHWKRNCPKYLAEKKAEKATQGKYDLLVV 292

Query: 62  ETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKL 121
           ET LVE D + WILDSGAT HIC S QE+SS+ +L++ E+TLKVGTG+V+SA AVGD+ L
Sbjct: 293 ETCLVECDASTWILDSGATNHICFSFQETSSWKKLKEGEITLKVGTGEVVSAEAVGDLTL 352

Query: 122 FFRNRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSLNEAFISRNGVHIYSAKLENNL 181
           FF++R+L L+++  VP +KRNLIS++ ++E  Y+++F +NE FI   G+ I SA  ENNL
Sbjct: 353 FFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKGIQICSAIRENNL 412

Query: 182 YVLRPNEAKTILNHKMFKISNTQNKRQRISLNNNTHLWHLRLGHINLDQIGILIKNGLLN 241
           Y LRP  A  +LN +MF+   TQNK+Q++S  +N +LWHLRLGHINL++I  L+K+G+LN
Sbjct: 413 YKLRPTRANVVLNTEMFRTLETQNKKQKVS--SNAYLWHLRLGHINLNRIERLVKSGILN 472

Query: 242 ELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYFISFI 301
           +LED+SLPPCESCLE KMTKR FTGK  +AK PLEL+H DLCG MNVKAR G+EYFISFI
Sbjct: 473 QLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFI 532

Query: 302 DDY-----LYLMEYKFKALEKFKEYKAEV 324
           DD+     +YL+ +K ++ EKFKEYKAEV
Sbjct: 533 DDFSRYGHVYLLHHKSESFEKFKEYKAEV 556

[Close]

BLAST of MELO3C031369.2 vs. TrEMBL
Match: tr|A0A165U314|A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica OX=654836 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 3.8e-78
Identity = 158/307 (51.47%), Postives = 218/307 (71.01%), Query Frame = 0


Query: 27  FLCNVNGYCKKNYPKYLAEKKNEK--EGKCDLLVLETYLVENDQNAWILDSGATYHICSS 86
           F CN  G+ K+N PKYLA+KK EK   GK DLLV++  LVE D +AW+ D+G+  HIC+S
Sbjct: 261 FHCNEMGHWKRNCPKYLADKKAEKATSGKYDLLVIDVCLVECDSSAWVFDTGSVAHICNS 320

Query: 87  LQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKLFFRNRFLF-LENLYIVPKIKRNLIS 146
            QE+ +  +L++ E+T++VG G  + A AVGD+ LFF++R++  L N Y+VP +KRNLIS
Sbjct: 321 KQETRNKRRLKEGEITMRVGNGSKVDAEAVGDLTLFFQDRYVMNLNNCYLVPLMKRNLIS 380

Query: 147 VSSLIEQFYSVTFSLNEAFISRNGVHIYSAKLENNLYVLRPNEAKTILNHKMFKISNTQN 206
           ++ ++E  Y+++F +NE FI   G+ I  A +    Y LRP  A  +LN        TQN
Sbjct: 381 IACILEHIYTISFEVNEVFILCKGIQICHAPIVRGFYKLRPTRANVVLNTTHIHNLETQN 440

Query: 207 KRQRISLNNNT--HLWHLRLGHINLDQIGILIKNGLLNELEDDSLPPCESCLEEKMTKRP 266
           K+Q    NN++  +LWHLRLGHINL++I  L K+GLL +LED SLPPCESCLE KMTKRP
Sbjct: 441 KKQ----NNDSAMYLWHLRLGHINLNRIEKLHKDGLLEQLEDFSLPPCESCLEGKMTKRP 500

Query: 267 FTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYFISFIDD-----YLYLMEYKFKALEKF 324
           FTGK  +A + LELIH D+CG M+VKAR G++YF+SF DD     Y+YL+++K ++ EKF
Sbjct: 501 FTGKGLRASDLLELIHTDVCGPMSVKARGGYQYFLSFTDDLSRYGYVYLLKHKSESFEKF 560

[Close]

BLAST of MELO3C031369.2 vs. TrEMBL
Match: tr|W9R1A7|W9R1A7_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis OX=981085 GN=L484_009340 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.1e-69
Identity = 144/275 (52.36%), Postives = 196/275 (71.27%), Query Frame = 0


Query: 23  KKKSFLCNVNGYCKKNYPKYLAE-KKNEKEGKCDLLVLETYLVENDQNAWILDSGATYHI 82
           K K F CN  G+ K+N  KYL E KK +++GK DL VLE  LVE D + WI+DSGAT H+
Sbjct: 156 KGKCFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLPVLEICLVEGDTSTWIIDSGATNHV 215

Query: 83  CSSLQESSSFMQLEKDEMTLKVGTGDVISARAVGDVKLFFR-NRFLFLENLYIVPKIKRN 142
           C SLQ  SS+ +L   +  +KVG G  ++A+AVG+V+L FR N+FL L N+Y +P I+RN
Sbjct: 216 CFSLQSLSSYTELADGDYMIKVGNGARVTAKAVGEVRLHFRENKFLVLNNVYFIPDIRRN 275

Query: 143 LISVSSLIEQFYSVTFSLNEAFISRNGVHIYSAKLENNLYVLRPNEAKTILNHKMFKISN 202
           LIS+S L EQF+ V F  +   ISRNG++IYS +L++ LY ++P    ++LN +MF+++ 
Sbjct: 276 LISMSKLFEQFFKVYFVNDFVHISRNGLNIYSGRLDDGLYCIKP-IPNSLLNTEMFRVAE 335

Query: 203 TQNKRQRISLNNNTHLWHLRLGHINLDQIGILIKNGLLNELEDDSLPPCESCLEEKMTKR 262
            +NK+Q+IS  NNT+LWHL LGHINL++I  L+K+G L EL    L  C SCLE KMTKR
Sbjct: 336 PKNKKQKISHENNTYLWHLGLGHINLNRIERLVKDGPLRELTVGELLVCRSCLEGKMTKR 395

Query: 263 PFTGKVYKAKEPLELIHLDLCGSMNVKARRGFEYF 296
           PFT K   A +PL+ IHLD+CG +NV+AR G+EY+
Sbjct: 396 PFTAKGKIATKPLQPIHLDVCGPLNVQARGGYEYY 429

[Close]

BLAST of MELO3C031369.2 vs. TrEMBL
Match: tr|A5BQ76|A5BQ76_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019364 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-53
Identity = 143/339 (42.18%), Postives = 201/339 (59.29%), Query Frame = 0


Query: 2   KGGKRKCPAAAKSKGKAKVAD------KKKSFLCNVNGYCKKNYPKYLAEKKNEKEGKCD 61
           K GK+K      + G A   +      K K F C    + K   P +LA+KK +      
Sbjct: 539 KKGKKKKNVKPNNNGAANGVNGVVKKPKGKCFHCKQPSHWKLQCPTWLAKKK-QGTSPFH 598

Query: 62  LLVLETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVG 121
           LLV+ET L     + W +D GAT H+C+SLQ      QL K E+ + +G G  ++  AVG
Sbjct: 599 LLVVETCLAVLTTHQWCVDLGATNHVCNSLQGFQETRQLSKGEVNIFLGNGSEVAVLAVG 658

Query: 122 DVKLFFR-NRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSL---NEAFISRNGVHIY 181
           ++ L F+ NR LFL+N+  VP I+RNLI +SSL +  YSV F+    +   I      I 
Sbjct: 659 NIALNFKNNRTLFLKNVLYVPSIRRNLIPISSLSKNGYSVCFNEFYDDSVVIKFREQMIC 718

Query: 182 SAKLENNLYVLRPNEAKTILNHKM--FKISNTQNKRQRISLNNNTHLWHLRLGHINLDQI 241
           S  L ++LY+L+      + N ++  F I     +++ I L + T+LWHLRLGHINLD+I
Sbjct: 719 SGSLIDSLYILKVTPELQLTNSEVNNFDIVAPLKRKRPIEL-SYTYLWHLRLGHINLDRI 778

Query: 242 GILIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKAR 301
            +L+K+G L+ L+ ++LP CESCLE KMTKRPF  K  +A + LELIH DLCG M+V+AR
Sbjct: 779 SLLVKDGPLSSLKVEALPTCESCLEGKMTKRPFPLKGNRANDVLELIHSDLCGPMSVQAR 838

Query: 302 RGFEYFISFIDD-----YLYLMEYKFKALEKFKEYKAEV 324
            GFEYF++F DD     Y+YL+  K +  EKFK +KAE+
Sbjct: 839 GGFEYFVTFTDDYSRYGYIYLLCRKSECFEKFKAFKAEM 875

[Close]

BLAST of MELO3C031369.2 vs. TrEMBL
Match: tr|A5BG88|A5BG88_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032735 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.7e-52
Identity = 143/338 (42.31%), Postives = 197/338 (58.28%), Query Frame = 0


Query: 2   KGGKRKCPAAAKSKGKAKVAD------KKKSFLCNVNGYCKKNYPKYLAEKKNEKEGKCD 61
           K GK+K      + G     +      K K F C   G+ K   P +LA+KK +      
Sbjct: 187 KKGKKKKNVKLNNNGATNGVNGVVKKPKGKCFHCKQPGHWKLQCPTWLAKKK-QGTSPFH 246

Query: 62  LLVLETYLVENDQNAWILDSGATYHICSSLQESSSFMQLEKDEMTLKVGTGDVISARAVG 121
           LLV+ET L     + W +DSGAT H+C+SLQ      QL K E+ + +G G  ++  AVG
Sbjct: 247 LLVVETCLAVLTTHQWCVDSGATNHVCNSLQGFQETRQLSKGEVNIFLGDGTEVAVLAVG 306

Query: 122 DVKLFFR-NRFLFLENLYIVPKIKRNLISVSSLIEQFYSVTFSL---NEAFISRNGVHIY 181
           ++ L F+ NR L L+N+  VP I+RNLISVSSL +  YSV F+    +   I      I 
Sbjct: 307 NIALNFKNNRILSLKNVLYVPSIRRNLISVSSLSKNGYSVCFNEFYDDSVVIKFREQIIC 366

Query: 182 SAKLENNLYVLRPNEAKTILNHKM--FKISNTQNKRQRISLNNNTHLWHLRLGHINLDQI 241
           S  L + LY+L+      + N ++  F I     ++  I L + T+LWHLRLGHINLD+I
Sbjct: 367 SGSLIDGLYILKVTPELQLTNSEVNNFDIVAPLKRKCPIEL-SYTYLWHLRLGHINLDRI 426

Query: 242 GILIKNGLLNELEDDSLPPCESCLEEKMTKRPFTGKVYKAKEPLELIHLDLCGSMNVKAR 301
            +L+K+G L+ L+ ++LP CESCLE KMT RPF  K  +A + LELIH DLCG M+V+AR
Sbjct: 427 SLLVKDGPLSSLKVEALPTCESCLEGKMTNRPFPLKGNRANDVLELIHSDLCGPMSVQAR 486

Query: 302 RGFEYFISFIDD-----YLYLMEYKFKALEKFKEYKAE 323
            GFEYF++F  D     Y+YL+  K +  EKFK +KAE
Sbjct: 487 GGFEYFVTFTYDYSRYGYIYLLRRKSECFEKFKAFKAE 522

The following BLAST results are available for this feature:

BLAST of MELO3C031369.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.0e-98	59.57	gag/pol protein, partial [Bryonia dioica]	[more]
AMY96445.1	5.7e-78	51.47	gag/pol protein [Momordica dioica]	[more]
EXB35423.1	1.7e-69	52.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis]	[more]
CAN77149.1	2.2e-53	42.18	hypothetical protein VITISV_019364 [Vitis vinifera]	[more]
CAN65627.1	4.1e-52	42.31	hypothetical protein VITISV_032735 [Vitis vinifera]	[more]

BLAST of MELO3C031369.2 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00300.1	2.9e-07	34.67	Gag-Pol-related retrotransposon family protein	[more]

BLAST of MELO3C031369.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZT94\|POLR2_ARATH	2.3e-14	25.46	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
sp\|Q94HW2\|POLR1_ARATH	3.1e-14	27.21	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
sp\|P10978\|POLX_TOBAC	1.5e-13	22.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
sp\|P93293\|M300_ARATH	5.2e-06	34.67	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MELO3C031369.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E2GK51\|E2GK51_BRYDI	6.7e-99	59.57	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
tr\|A0A165U314\|A0A165U314_9ROSI	3.8e-78	51.47	Gag/pol protein OS=Momordica dioica OX=654836 PE=4 SV=1	[more]
tr\|W9R1A7\|W9R1A7_9ROSA	1.1e-69	52.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis O...	[more]
tr\|A5BQ76\|A5BQ76_VITVI	1.5e-53	42.18	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_019364 PE=4 SV=1	[more]
tr\|A5BG88\|A5BG88_VITVI	2.7e-52	42.31	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032735 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031369.2.1	MELO3C031369.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 203..257 e-value: 1.3E-10 score: 40.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 560..602
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 560..591
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 47..323
None	No IPR available	PANTHER	PTHR11439:SF234	SUBFAMILY NOT NAMED	coord: 47..323

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031369.2	Wax gourd	medwgoB458
MELO3C031369.2	Cucumber (Gy14) v2	cgybmedB122
MELO3C031369.2	Cucumber (Gy14) v1	cgymedB443
MELO3C031369.2	Cucurbita maxima (Rimu)	cmamedB830
MELO3C031369.2	Cucurbita moschata (Rifu)	cmomedB823
MELO3C031369.2	Cucurbita pepo (Zucchini)	cpemedB125
MELO3C031369.2	Wild cucumber (PI 183967)	cpimedB135
MELO3C031369.2	Cucumber (Chinese Long) v2	cumedB135
MELO3C031369.2	Bottle gourd (USVL1VR-Ls)	lsimedB125
MELO3C031369.2	Watermelon (97103) v1	medwmB417
MELO3C031369.2	Cucumber (Chinese Long) v3	cucmedB137