MELO3C031200.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031200.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPHD finger alfin-like protein
Locationchr05 : 14644084 .. 14644359 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAAGACAAGCACGATGACACCTTATGTGGGGCAGTGAAAACTATGCTTCAGATGAATTTTGGATTTACTGTGATATCTGTAAGAAATGGTTTCATGGAAAATTTGTTGTACAACGAAATGCTTCAGTTTATCAGTTTTCTTGCGATGTATTGAGTTTTCTAAAACAGGGTAAATAACCATGATAATAACCATGATGTAATAACCATGATAATAACCATGATTAATAACCATGATAATAACCATGATGTTTTTTGTTTAGGTTTGTTCTCAAAG

mRNA sequence

GATGAAGACAAGCACGATGACACCTTATGTGGGGCAGTGAAAACTATGCTTCAGATGAATTTTGGATTTACTGTGATATCTGTAAGAAATGGTTTCATGGAAAATTTGTTGTACAACGAAATGCTTCAGTTTATCAGTTTTCTTGCGATGTATTGAGTTTTCTAAAACAGGGATGTTTTTTGTTTAGGTTTGTTCTCAAAG

Coding sequence (CDS)

ATGTGGGGCAGTGAAAACTATGCTTCAGATGAATTTTGGATTTACTGTGATATCTGTAAGAAATGGTTTCATGGAAAATTTGTTGTACAACGAAATGCTTCAGTTTATCAGTTTTCTTGCGATGTATTGAGTTTTCTAAAACAGGGATGTTTTTTGTTTAGGTTTGTTCTCAAA

Protein sequence

MWGSENYASDEFWIYCDICKKWFHGKFVVQRNASVYQFSCDVLSFLKQGCFLFRFVLK
Homology
[Close]
BLAST of MELO3C031200.2 vs. NCBI nr
Match: PWA83770.1 (hypothetical protein CTI12_AA117620 [Artemisia annua])

HSP 1 Score: 59.3 bits (142), Expect = 5.0e-06
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 4   SENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLS 45
           SENYASDEFWI CD+C++WFHGK V    Q+  S+  + C + S
Sbjct: 201 SENYASDEFWICCDLCERWFHGKCVKITPQKAESISHYKCPICS 244

[Close]
BLAST of MELO3C031200.2 vs. NCBI nr
Match: XP_006849596.1 (PHD finger protein ALFIN-LIKE 4 isoform X1 [Amborella trichopoda] >ERN11177.1 hypothetical protein AMTR_s00024p00200570 [Amborella trichopoda])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLSFLKQ 49
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S  K+
Sbjct: 208 ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCSSNKR 254

[Close]
BLAST of MELO3C031200.2 vs. NCBI nr
Match: XP_011625288.1 (PHD finger protein ALFIN-LIKE 4 isoform X2 [Amborella trichopoda])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLSFLKQ 49
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S  K+
Sbjct: 206 ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCSSNKR 252

[Close]
BLAST of MELO3C031200.2 vs. NCBI nr
Match: XP_020526131.1 (PHD finger protein ALFIN-LIKE 4 isoform X3 [Amborella trichopoda])

HSP 1 Score: 57.4 bits (137), Expect = 1.9e-05
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLSFLKQ 49
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S  K+
Sbjct: 182 ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCSSNKR 228

[Close]
BLAST of MELO3C031200.2 vs. NCBI nr
Match: XP_009769789.1 (PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Nicotiana sylvestris] >XP_016473521.1 PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Nicotiana tabacum])

HSP 1 Score: 57.0 bits (136), Expect = 2.5e-05
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLS 45
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S
Sbjct: 207 ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACS 249

[Close]
BLAST of MELO3C031200.2 vs. TAIR10
Match: AT5G20510.1 (alfin-like 5)

HSP 1 Score: 52.0 bits (123), Expect = 1.4e-07
Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHG---KFVVQRNASVYQFSCDVLS 45
           +NYASDEFWI CD+C+KWFHG   K    R   +  + C   S
Sbjct: 212 DNYASDEFWICCDMCEKWFHGECVKITPARAEHIKHYKCPTCS 254

[Close]
BLAST of MELO3C031200.2 vs. TAIR10
Match: AT5G26210.1 (alfin-like 4)

HSP 1 Score: 49.7 bits (117), Expect = 7.2e-07
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSC 41
           E+YA+DEFWI CD+C+ WFHGK V     R   + Q+ C
Sbjct: 207 ESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKC 245

[Close]
BLAST of MELO3C031200.2 vs. TAIR10
Match: AT5G05610.1 (alfin-like 1)

HSP 1 Score: 49.3 bits (116), Expect = 9.4e-07
Identity = 18/38 (47.37%), Postives = 26/38 (68.42%), Query Frame = 0 

Query: 6   NYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSC 41
           NY +DEFWI CD+C++W+HGK V     +  S+ Q+ C
Sbjct: 194 NYTNDEFWICCDVCERWYHGKCVKITPAKAESIKQYKC 231

[Close]
BLAST of MELO3C031200.2 vs. TAIR10
Match: AT2G02470.1 (alfin-like 6)

HSP 1 Score: 48.5 bits (114), Expect = 1.6e-06
Identity = 17/24 (70.83%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV 29
           +NY +DEFWI CD C+KWFHGK V
Sbjct: 208 DNYGTDEFWICCDACEKWFHGKCV 231

[Close]
BLAST of MELO3C031200.2 vs. TAIR10
Match: AT1G14510.1 (alfin-like 7)

HSP 1 Score: 48.1 bits (113), Expect = 2.1e-06
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV 29
           +NY  DEFWI CD C+KWFHGK V
Sbjct: 203 DNYGGDEFWICCDACEKWFHGKCV 226

[Close]
BLAST of MELO3C031200.2 vs. Swiss-Prot
Match: sp|Q5XEM9|ALFL5_ARATH (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.6e-06
Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHG---KFVVQRNASVYQFSCDVLS 45
           +NYASDEFWI CD+C+KWFHG   K    R   +  + C   S
Sbjct: 212 DNYASDEFWICCDMCEKWFHGECVKITPARAEHIKHYKCPTCS 254

[Close]
BLAST of MELO3C031200.2 vs. Swiss-Prot
Match: sp|Q40359|ALFIN_MEDSA (PHD finger protein Alfin1 OS=Medicago sativa OX=3879 GN=ALFIN-1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.4e-06
Identity = 22/46 (47.83%), Postives = 28/46 (60.87%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFVVQRNAS---VYQFSCDVLSFLK 48
           +NY +DEFWI CD+C+KWFHGK V    A    + Q+ C   S  K
Sbjct: 208 DNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKK 253

[Close]
BLAST of MELO3C031200.2 vs. Swiss-Prot
Match: sp|O81488|ALFL4_ARATH (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 20/39 (51.28%), Postives = 26/39 (66.67%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSC 41
           E+YA+DEFWI CD+C+ WFHGK V     R   + Q+ C
Sbjct: 207 ESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKC 245

[Close]
BLAST of MELO3C031200.2 vs. Swiss-Prot
Match: sp|B8B8C5|ALFL9_ORYSI (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV 29
           E+Y +DEFWI CDIC+KWFHGK V
Sbjct: 216 ESYGADEFWICCDICEKWFHGKCV 239

[Close]
BLAST of MELO3C031200.2 vs. Swiss-Prot
Match: sp|Q6YTY3|ALFL9_ORYSJ (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0608400 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-05
Identity = 18/24 (75.00%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV 29
           E+Y +DEFWI CDIC+KWFHGK V
Sbjct: 217 ESYGADEFWICCDICEKWFHGKCV 240

[Close]
BLAST of MELO3C031200.2 vs. TrEMBL
Match: tr|A0A2U1PDG5|A0A2U1PDG5_ARTAN (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA117620 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.3e-06
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 4   SENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLS 45
           SENYASDEFWI CD+C++WFHGK V    Q+  S+  + C + S
Sbjct: 201 SENYASDEFWICCDLCERWFHGKCVKITPQKAESISHYKCPICS 244

[Close]
BLAST of MELO3C031200.2 vs. TrEMBL
Match: tr|W1PMF2|W1PMF2_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00024p00200570 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-05
Identity = 26/47 (55.32%), Postives = 30/47 (63.83%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLSFLKQ 49
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S  K+
Sbjct: 208 ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCSSNKR 254

[Close]
BLAST of MELO3C031200.2 vs. TrEMBL
Match: tr|A0A2R6QFD2|A0A2R6QFD2_ACTCH (PHD finger protein ALFIN-LIKE 4, N-terminally processed like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc17672 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-05
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLS 45
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S
Sbjct: 220 ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPTCS 262

[Close]
BLAST of MELO3C031200.2 vs. TrEMBL
Match: tr|A0A0D6R349|A0A0D6R349_ARACU (Uncharacterized protein OS=Araucaria cunninghamii OX=56994 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-05
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLS 45
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S
Sbjct: 81  ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACS 123

[Close]
BLAST of MELO3C031200.2 vs. TrEMBL
Match: tr|A0A1S4AAB9|A0A1S4AAB9_TOBAC (PHD finger protein ALFIN-LIKE 4-like OS=Nicotiana tabacum OX=4097 GN=LOC107795402 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-05
Identity = 25/43 (58.14%), Postives = 28/43 (65.12%), Query Frame = 0 

Query: 5   ENYASDEFWIYCDICKKWFHGKFV---VQRNASVYQFSCDVLS 45
           ENYASDEFWI CDIC+KWFHGK V     R   + Q+ C   S
Sbjct: 207 ENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACS 249

The following BLAST results are available for this feature:
BLAST of MELO3C031200.2 vs. NCBI nr
Match NameE-valueIdentityDescription
PWA83770.15.0e-0654.55hypothetical protein CTI12_AA117620 [Artemisia annua][more]
XP_006849596.11.9e-0555.32PHD finger protein ALFIN-LIKE 4 isoform X1 [Amborella trichopoda] >ERN11177.1 hy... [more]
XP_011625288.11.9e-0555.32PHD finger protein ALFIN-LIKE 4 isoform X2 [Amborella trichopoda][more]
XP_020526131.11.9e-0555.32PHD finger protein ALFIN-LIKE 4 isoform X3 [Amborella trichopoda][more]
XP_009769789.12.5e-0558.14PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Nicotiana sylvestris] >XP_01647... [more]
BLAST of MELO3C031200.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G20510.11.4e-0748.84alfin-like 5[more]
AT5G26210.17.2e-0751.28alfin-like 4[more]
AT5G05610.19.4e-0747.37alfin-like 1[more]
AT2G02470.11.6e-0670.83alfin-like 6[more]
AT1G14510.12.1e-0670.83alfin-like 7[more]
BLAST of MELO3C031200.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q5XEM9|ALFL5_ARATH2.6e-0648.84PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1[more]
sp|Q40359|ALFIN_MEDSA4.4e-0647.83PHD finger protein Alfin1 OS=Medicago sativa OX=3879 GN=ALFIN-1 PE=1 SV=1[more]
sp|O81488|ALFL4_ARATH1.3e-0551.28PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2[more]
sp|B8B8C5|ALFL9_ORYSI1.3e-0575.00PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26... [more]
sp|Q6YTY3|ALFL9_ORYSJ1.3e-0575.00PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07... [more]
BLAST of MELO3C031200.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2U1PDG5|A0A2U1PDG5_ARTAN3.3e-0654.55Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA117620 PE=4 SV=1[more]
tr|W1PMF2|W1PMF2_AMBTC1.3e-0555.32Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00024p00200570... [more]
tr|A0A2R6QFD2|A0A2R6QFD2_ACTCH1.6e-0558.14PHD finger protein ALFIN-LIKE 4, N-terminally processed like OS=Actinidia chinen... [more]
tr|A0A0D6R349|A0A0D6R349_ARACU1.6e-0558.14Uncharacterized protein OS=Araucaria cunninghamii OX=56994 PE=4 SV=1[more]
tr|A0A1S4AAB9|A0A1S4AAB9_TOBAC1.6e-0558.14PHD finger protein ALFIN-LIKE 4-like OS=Nicotiana tabacum OX=4097 GN=LOC10779540... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR013083Znf_RING/FYVE/PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0042393 histone binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031200.2.1MELO3C031200.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 2..44
e-value: 7.2E-10
score: 40.0
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILYSSF57903FYVE/PHD zinc fingercoord: 7..40

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031200.2Wax gourdmedwgoB460
MELO3C031200.2Cucumber (Gy14) v2cgybmedB122
MELO3C031200.2Cucumber (Gy14) v1cgymedB460
MELO3C031200.2Cucurbita maxima (Rimu)cmamedB193
MELO3C031200.2Cucurbita maxima (Rimu)cmamedB833
MELO3C031200.2Cucurbita moschata (Rifu)cmomedB184
MELO3C031200.2Cucurbita moschata (Rifu)cmomedB823
MELO3C031200.2Cucurbita pepo (Zucchini)cpemedB916
MELO3C031200.2Wild cucumber (PI 183967)cpimedB135
MELO3C031200.2Cucumber (Chinese Long) v2cumedB135
MELO3C031200.2Bottle gourd (USVL1VR-Ls)lsimedB125
MELO3C031200.2Silver-seed gourdcarmedB0493
MELO3C031200.2Cucumber (Chinese Long) v3cucmedB137