MELO3C031121.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031121.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Chloride channel protein
Location	chr05 : 8606303 .. 8606548 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGGTATGTGCATCATCATGGTTGAAATTTAAAACAATTTGAAAATTTTTCCTCTCGTCATGCGTGTACTTCTAATGTCCAAGGTAAGTTAACAAATTGAAAATTGAAATTTTAATCGTTCAGCAAGTTTATTTCCACGTGAAAGTGAGTTATGTATATAATCACTTCAGGCTGTTAGTGATGCCTTTAATGAAAGCCTATATGAAGAGCAAGATCAATTGAAGGGTATTCCATTACTGGAATGA

mRNA sequence

ATAGGTATGTGCATCATCATGGTTGAAATTTAAAACAATTTGAAAATTTTTCCTCTCGTCATGCGTGTACTTCTAATGTCCAAGGCTGTTAGTGATGCCTTTAATGAAAGCCTATATGAAGAGCAAGATCAATTGAAGGGTATTCCATTACTGGAATGA

Coding sequence (CDS)

ATGCGTGTACTTCTAATGTCCAAGGCTGTTAGTGATGCCTTTAATGAAAGCCTATATGAAGAGCAAGATCAATTGAAGGGTATTCCATTACTGGAATGA

Protein sequence

MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE

Homology

[Close]

BLAST of MELO3C031121.2 vs. NCBI nr
Match: KGN48017.1 (hypothetical protein Csa_6G425060 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-05
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLLMSKAV DAFNE LYEEQ QLKGIPLLE
Sbjct: 542 MLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C031121.2 vs. NCBI nr
Match: XP_008449563.1 (PREDICTED: chloride channel protein CLC-d [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-05
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLLMSKAV DAFNE LYEEQ QLKGIPLLE
Sbjct: 542 MLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C031121.2 vs. NCBI nr
Match: XP_011657577.1 (PREDICTED: chloride channel protein CLC-d [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-05
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLLMSKAV DAFNE LYEEQ QLKGIPLLE
Sbjct: 542 MLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C031121.2 vs. NCBI nr
Match: XP_022959118.1 (chloride channel protein CLC-d isoform X2 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-05
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLLMSKAV DAFNE LYEEQ QLKGIPLLE
Sbjct: 542 MLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C031121.2 vs. NCBI nr
Match: XP_022959117.1 (chloride channel protein CLC-d isoform X1 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 4.0e-05
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLLMSKAV DAFNE LYEEQ QLKGIPLLE
Sbjct: 550 MLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 581

[Close]

BLAST of MELO3C031121.2 vs. TAIR10
Match: AT5G26240.1 (chloride channel D)

HSP 1 Score: 49.7 bits (117), Expect = 3.9e-07
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLL+SKAV DAFNE LYE Q +LKGIPLLE
Sbjct: 544 MLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]

BLAST of MELO3C031121.2 vs. Swiss-Prot
Match: sp|P92943|CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 7.1e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLL+SKAV DAFNE LYE Q +LKGIPLLE
Sbjct: 544 MLVLLISKAVGDAFNEGLYEVQARLKGIPLLE 575

[Close]

BLAST of MELO3C031121.2 vs. TrEMBL
Match: tr|A0A1S3BMB3|A0A1S3BMB3_CUCME (Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-05
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLLMSKAV DAFNE LYEEQ QLKGIPLLE
Sbjct: 542 MLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C031121.2 vs. TrEMBL
Match: tr|A0A0A0KI42|A0A0A0KI42_CUCSA (Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-05
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLLMSKAV DAFNE LYEEQ QLKGIPLLE
Sbjct: 542 MLVLLMSKAVGDAFNEGLYEEQAQLKGIPLLE 573

[Close]

BLAST of MELO3C031121.2 vs. TrEMBL
Match: tr|A0A2N9H2I9|A0A2N9H2I9_FAGSY (Chloride channel protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36619 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-04
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
           M VLL+SKAV DAFNE LYEEQ QL+GIPLLE
Sbjct: 609 MLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 640

[Close]

BLAST of MELO3C031121.2 vs. TrEMBL
Match: tr|A0A2P4LVL3|A0A2P4LVL3_QUESU (L-ascorbate oxidase OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-04
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1    MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
            M VLL+SKAV DAFNE LYEEQ QL+GIPLLE
Sbjct: 1140 MLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 1171

[Close]

BLAST of MELO3C031121.2 vs. TrEMBL
Match: tr|A0A2P4LW82|A0A2P4LW82_QUESU (Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.7e-04
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1    MRVLLMSKAVSDAFNESLYEEQDQLKGIPLLE 33
            M VLL+SKAV DAFNE LYEEQ QL+GIPLLE
Sbjct: 1140 MLVLLISKAVGDAFNEGLYEEQAQLRGIPLLE 1171

The following BLAST results are available for this feature:

BLAST of MELO3C031121.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48017.1	4.0e-05	87.50	hypothetical protein Csa_6G425060 [Cucumis sativus]	[more]
XP_008449563.1	4.0e-05	87.50	PREDICTED: chloride channel protein CLC-d [Cucumis melo]	[more]
XP_011657577.1	4.0e-05	87.50	PREDICTED: chloride channel protein CLC-d [Cucumis sativus]	[more]
XP_022959118.1	4.0e-05	87.50	chloride channel protein CLC-d isoform X2 [Cucurbita moschata]	[more]
XP_022959117.1	4.0e-05	87.50	chloride channel protein CLC-d isoform X1 [Cucurbita moschata]	[more]

BLAST of MELO3C031121.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G26240.1	3.9e-07	78.13	chloride channel D	[more]

BLAST of MELO3C031121.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P92943\|CLCD_ARATH	7.1e-06	78.13	Chloride channel protein CLC-d OS=Arabidopsis thaliana OX=3702 GN=CLC-D PE=1 SV=...	[more]

BLAST of MELO3C031121.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BMB3\|A0A1S3BMB3_CUCME	2.6e-05	87.50	Chloride channel protein OS=Cucumis melo OX=3656 GN=LOC103491408 PE=3 SV=1	[more]
tr\|A0A0A0KI42\|A0A0A0KI42_CUCSA	2.6e-05	87.50	Chloride channel protein OS=Cucumis sativus OX=3659 GN=Csa_6G425060 PE=3 SV=1	[more]
tr\|A0A2N9H2I9\|A0A2N9H2I9_FAGSY	1.7e-04	81.25	Chloride channel protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36619 PE=3 SV=1	[more]
tr\|A0A2P4LVL3\|A0A2P4LVL3_QUESU	1.7e-04	81.25	L-ascorbate oxidase OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=1	[more]
tr\|A0A2P4LW82\|A0A2P4LW82_QUESU	1.7e-04	81.25	Chloride channel protein clc-d OS=Quercus suber OX=58331 GN=CFP56_42428 PE=3 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006821	chloride transport
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0006811	ion transport
biological_process	GO:1903959	regulation of anion transmembrane transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005216	ion channel activity
molecular_function	GO:0005247	voltage-gated chloride channel activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031121.2.1	MELO3C031121.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031121.2	Cucumber (Gy14) v2	cgybmedB114
MELO3C031121.2	Cucumber (Gy14) v1	cgymedB346
MELO3C031121.2	Cucumber (Gy14) v1	cgymedB429
MELO3C031121.2	Cucurbita maxima (Rimu)	cmamedB266
MELO3C031121.2	Cucurbita maxima (Rimu)	cmamedB394
MELO3C031121.2	Cucurbita maxima (Rimu)	cmamedB946
MELO3C031121.2	Cucurbita moschata (Rifu)	cmomedB250
MELO3C031121.2	Cucurbita moschata (Rifu)	cmomedB381
MELO3C031121.2	Cucurbita moschata (Rifu)	cmomedB854
MELO3C031121.2	Cucurbita moschata (Rifu)	cmomedB935
MELO3C031121.2	Cucurbita pepo (Zucchini)	cpemedB166
MELO3C031121.2	Cucurbita pepo (Zucchini)	cpemedB362
MELO3C031121.2	Wild cucumber (PI 183967)	cpimedB127
MELO3C031121.2	Cucumber (Chinese Long) v2	cumedB127
MELO3C031121.2	Melon (DHL92) v3.6.1	medmedB144
MELO3C031121.2	Bottle gourd (USVL1VR-Ls)	lsimedB027
MELO3C031121.2	Watermelon (Charleston Gray)	medwcgB376
MELO3C031121.2	Watermelon (Charleston Gray)	medwcgB378
MELO3C031121.2	Watermelon (97103) v1	medwmB404
MELO3C031121.2	Watermelon (97103) v1	medwmB418
MELO3C031121.2	Silver-seed gourd	carmedB0240
MELO3C031121.2	Silver-seed gourd	carmedB0945
MELO3C031121.2	Silver-seed gourd	carmedB1060
MELO3C031121.2	Cucumber (Chinese Long) v3	cucmedB129
MELO3C031121.2	Watermelon (97103) v2	medwmbB378
MELO3C031121.2	Wax gourd	medwgoB453