MELO3C031116.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031116.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionparamyosin-like
Locationchr05 : 8345900 .. 8346068 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGCTCAACATCAAGAAATCAGAATTAGAAAGTCAAATAGTAGTAGTCAAGAGCTCAACATGGACTGTAGCTAGTATGATTGTAGGGACATGGGCTGAATGTGCAAAGAGGAAAGTTGAACATTATTACGAGGTACGTCGAGGAAAATATAAGGTTGCTTTAA

mRNA sequence

ATGGAGGAGCTCAACATCAAGAAATCAGAATTAGAAAGTCAAATAGTAGTAGTCAAGAGCTCAACATGGACTGTAGCTAGTATGATTGTAGGGACATGGGCTGAATGTGCAAAGAGGAAAGTTGAACATTATTACGAGGTACGTCGAGGAAAATATAAGGTTGCTTTAA

Coding sequence (CDS)

ATGGAGGAGCTCAACATCAAGAAATCAGAATTAGAAAGTCAAATAGTAGTAGTCAAGAGCTCAACATGGACTGTAGCTAGTATGATTGTAGGGACATGGGCTGAATGTGCAAAGAGGAAAGTTGAACATTATTACGAGGTACGTCGAGGAAAATATAAGGTTGCTTTA

Protein sequence

MEELNIKKSELESQIVVVKSSTWTVASMIVGTWAECAKRKVEHYYEVRRGKYKVAL
Homology
[Close]
BLAST of MELO3C031116.2 vs. NCBI nr
Match: KGN65701.1 (hypothetical protein Csa_1G502890 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-05
Identity = 23/29 (79.31%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 27 SMIVGTWAECAKRKVEHYYEVRRGKYKVA 56
          SM++GTWAECA+RK+EHYYEV RGKY+VA
Sbjct: 3  SMVIGTWAECARRKIEHYYEVCRGKYEVA 31

[Close]
BLAST of MELO3C031116.2 vs. TrEMBL
Match: tr|A0A0A0M0F2|A0A0A0M0F2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502890 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-05
Identity = 23/29 (79.31%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 27 SMIVGTWAECAKRKVEHYYEVRRGKYKVA 56
          SM++GTWAECA+RK+EHYYEV RGKY+VA
Sbjct: 3  SMVIGTWAECARRKIEHYYEVCRGKYEVA 31

The following BLAST results are available for this feature:
BLAST of MELO3C031116.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65701.11.8e-0579.31hypothetical protein Csa_1G502890 [Cucumis sativus][more]
BLAST of MELO3C031116.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C031116.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C031116.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M0F2|A0A0A0M0F2_CUCSA1.2e-0579.31Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G502890 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031116.2.1MELO3C031116.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031116.2Cucumber (Gy14) v2cgybmedB114
MELO3C031116.2Cucumber (Gy14) v2cgybmedB195
MELO3C031116.2Cucumber (Gy14) v2cgybmedB197
MELO3C031116.2Cucumber (Gy14) v1cgymedB429
MELO3C031116.2Cucurbita maxima (Rimu)cmamedB266
MELO3C031116.2Cucurbita maxima (Rimu)cmamedB394
MELO3C031116.2Cucurbita maxima (Rimu)cmamedB657
MELO3C031116.2Cucurbita maxima (Rimu)cmamedB860
MELO3C031116.2Cucurbita maxima (Rimu)cmamedB946
MELO3C031116.2Cucurbita moschata (Rifu)cmomedB250
MELO3C031116.2Cucurbita moschata (Rifu)cmomedB381
MELO3C031116.2Cucurbita moschata (Rifu)cmomedB644
MELO3C031116.2Cucurbita moschata (Rifu)cmomedB854
MELO3C031116.2Cucurbita moschata (Rifu)cmomedB935
MELO3C031116.2Cucurbita pepo (Zucchini)cpemedB166
MELO3C031116.2Cucurbita pepo (Zucchini)cpemedB362
MELO3C031116.2Cucurbita pepo (Zucchini)cpemedB825
MELO3C031116.2Wild cucumber (PI 183967)cpimedB127
MELO3C031116.2Wild cucumber (PI 183967)cpimedB219
MELO3C031116.2Wild cucumber (PI 183967)cpimedB221
MELO3C031116.2Cucumber (Chinese Long) v2cumedB127
MELO3C031116.2Cucumber (Chinese Long) v2cumedB218
MELO3C031116.2Cucumber (Chinese Long) v2cumedB220
MELO3C031116.2Melon (DHL92) v3.6.1medmedB144
MELO3C031116.2Bottle gourd (USVL1VR-Ls)lsimedB027
MELO3C031116.2Bottle gourd (USVL1VR-Ls)lsimedB375
MELO3C031116.2Watermelon (Charleston Gray)medwcgB376
MELO3C031116.2Watermelon (Charleston Gray)medwcgB378
MELO3C031116.2Watermelon (Charleston Gray)medwcgB390
MELO3C031116.2Watermelon (97103) v1medwmB404
MELO3C031116.2Watermelon (97103) v1medwmB418
MELO3C031116.2Silver-seed gourdcarmedB0240
MELO3C031116.2Silver-seed gourdcarmedB0945
MELO3C031116.2Silver-seed gourdcarmedB1060
MELO3C031116.2Cucumber (Chinese Long) v3cucmedB129
MELO3C031116.2Cucumber (Chinese Long) v3cucmedB222
MELO3C031116.2Cucumber (Chinese Long) v3cucmedB224
MELO3C031116.2Watermelon (97103) v2medwmbB374
MELO3C031116.2Watermelon (97103) v2medwmbB378
MELO3C031116.2Watermelon (97103) v2medwmbB391
MELO3C031116.2Wax gourdmedwgoB453