MELO3C031112.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031112.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	glial fibrillary acidic protein-like
Location	chr05 : 7407794 .. 7408525 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCTCTCATGATTCTCAAAGAAAAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGGTATGCATTACAGATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTCCAAAATGCATTACATGAACAAGCCACGTCATCTCAATAGACCGCTATAGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGCGAAAAGTAAAAACAGATTTTTGCAAAAAGTCGTCAACAATTCTGAAAGCCAGTTGCTGATATGTCACAAAGCAAGGAAAGTCGTAACAGATGACTATGCTCAATTAATAGAAAATATCAAGAATGTCGATAGATTTCATGATATGGAAGGACGAGTACAAGACATTGAGGCATAAGTAAGATGATGTTATAGGTCGGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCATATCAATTCTCA

mRNA sequence

ATGTCAGAATCCTTAGTTCCAAACATAGAATTGAAGAAATATCTCTCATGATTCTCAAAGAAAAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGACCGCTATAGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGCGAAAAGTAAAAACAGATTTTTGCAAAAAGTCGTCAACAATTCTGAAAGCCAGTTGCTGATATGTCACAAAGCAAGGAAAGTCGTAACAGATGACTATGCTCAATTAATAGAAAATATCAAGAATGTCGATAGATTTCATGATATGGAAGGACGAGTACAAGACATTGAGGCATAAGTAAGATGATGTTATAGGTCGGATGGAACGAGGGGCTGAAAAATTAAGACAAATGGCGAGGATGGCATATCAATTCTCA

Coding sequence (CDS)

ATGATTCTCAAAGAAAAGGAATTAAAGCGATTAAGAGAAATGAATTGTGTTATGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCAAAACGAAAGCTATTGGAGTTGGAGAAGGAAAACGATTCTTTAAATACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCAACTTACATGAAGAGATAGAAGCTAAAAAGACCGCTATAGAAATTGAGGTTCTACAACATTCGATTAAAGAATACAAATCCCAACTTATAGAAGCGAAAAGTAAAAACAGATTTTTGCAAAAAGTCGTCAACAATTCTGAAAGCCAGTTGCTGATATGTCACAAAGCAAGGAAAGTCGTAACAGATGACTATGCTCAATTAATAGAAAATATCAAGAATGTCGATAGATTTCATGATATGGAAGGACGAGTACAAGACATTGAGGCATAA

Protein sequence

MILKEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKRLLRNIANLHEEIEAKKTAIEIEVLQHSIKEYKSQLIEAKSKNRFLQKVVNNSESQLLICHKARKVVTDDYAQLIENIKNVDRFHDMEGRVQDIEA

Homology

[Close]

BLAST of MELO3C031112.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 2.8e-57
Identity = 130/165 (78.79%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 4   KEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTE 63
           +EKELKRLREMNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTE
Sbjct: 17  QEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTE 76

Query: 64  AIQVRKKNKRLLRNIANLHEEIEAKK---------------TAIEIEVLQHSIKEYKSQL 123
           AIQVRKKNKRLLRNIANLHEEIEA+K               TA+ IEVLQHSI+EYKSQL
Sbjct: 77  AIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIEVLQHSIEEYKSQL 136

Query: 124 IEAKSKNRFLQKVVNNSESQLLICHKARKVVTDDYAQLIENIKNV 154
           IEA+SKN FLQK VN+SESQLLIC KAR+V+TDDYAQL+E  + +
Sbjct: 137 IEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 181

[Close]

BLAST of MELO3C031112.2 vs. NCBI nr
Match: KGN65327.1 (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 59/117 (50.43%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 14  MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKL---LELEKENDSLNTEAIQVRKK 73
           M+ V+ATENE LR+EVK+WVQ+A  ++R L+EA+R L    ELEK+ +SLN EAIQ+RKK
Sbjct: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 74  NKRLLRNIANLHEEIEAKKTAI-----EIEVLQHSIKEYKSQLIE-AKSKNRFLQKV 122
           NKRLLR+IA +H E EA+K  I     E+E +   + +++S L E A S  R   K+
Sbjct: 61  NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTKM 117

[Close]

BLAST of MELO3C031112.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.8e-57
Identity = 130/165 (78.79%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 4   KEKELKRLREMNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTE 63
           +EKELKRLREMNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTE
Sbjct: 17  QEKELKRLREMNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTE 76

Query: 64  AIQVRKKNKRLLRNIANLHEEIEAKK---------------TAIEIEVLQHSIKEYKSQL 123
           AIQVRKKNKRLLRNIANLHEEIEA+K               TA+ IEVLQHSI+EYKSQL
Sbjct: 77  AIQVRKKNKRLLRNIANLHEEIEAEKEFQNALHEQAISSQQTAMGIEVLQHSIEEYKSQL 136

Query: 124 IEAKSKNRFLQKVVNNSESQLLICHKARKVVTDDYAQLIENIKNV 154
           IEA+SKN FLQK VN+SESQLLIC KAR+V+TDDYAQL+E  + +
Sbjct: 137 IEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 181

[Close]

BLAST of MELO3C031112.2 vs. TrEMBL
Match: tr|A0A0A0LWU7|A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.9e-14
Identity = 59/117 (50.43%), Postives = 81/117 (69.23%), Query Frame = 0


Query: 14  MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKL---LELEKENDSLNTEAIQVRKK 73
           M+ V+ATENE LR+EVK+WVQ+A  ++R L+EA+R L    ELEK+ +SLN EAIQ+RKK
Sbjct: 1   MSHVLATENEGLRKEVKRWVQKATTSERQLEEAQRHLQRQSELEKDMNSLNIEAIQIRKK 60

Query: 74  NKRLLRNIANLHEEIEAKKTAI-----EIEVLQHSIKEYKSQLIE-AKSKNRFLQKV 122
           NKRLLR+IA +H E EA+K  I     E+E +   + +++S L E A S  R   K+
Sbjct: 61  NKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTKM 117

The following BLAST results are available for this feature:

BLAST of MELO3C031112.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464352.1	2.8e-57	78.79	PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo]	[more]
KGN65327.1	2.9e-14	50.43	hypothetical protein Csa_1G328390 [Cucumis sativus]	[more]

BLAST of MELO3C031112.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031112.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031112.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CLQ1\|A0A1S3CLQ1_CUCME	1.8e-57	78.79	glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=...	[more]
tr\|A0A0A0LWU7\|A0A0A0LWU7_CUCSA	1.9e-14	50.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328390 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031112.2.1	MELO3C031112.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..91
None	No IPR available	COILS	Coil	Coil	coord: 94..121

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031112.2	Cucumber (Gy14) v2	cgybmedB120
MELO3C031112.2	Cucumber (Gy14) v2	cgybmedB195
MELO3C031112.2	Cucumber (Gy14) v2	cgybmedB197
MELO3C031112.2	Cucumber (Gy14) v1	cgymedB347
MELO3C031112.2	Cucumber (Gy14) v1	cgymedB429
MELO3C031112.2	Cucurbita maxima (Rimu)	cmamedB266
MELO3C031112.2	Cucurbita maxima (Rimu)	cmamedB394
MELO3C031112.2	Cucurbita maxima (Rimu)	cmamedB657
MELO3C031112.2	Cucurbita maxima (Rimu)	cmamedB860
MELO3C031112.2	Cucurbita maxima (Rimu)	cmamedB946
MELO3C031112.2	Cucurbita moschata (Rifu)	cmomedB250
MELO3C031112.2	Cucurbita moschata (Rifu)	cmomedB381
MELO3C031112.2	Cucurbita moschata (Rifu)	cmomedB644
MELO3C031112.2	Cucurbita moschata (Rifu)	cmomedB854
MELO3C031112.2	Cucurbita moschata (Rifu)	cmomedB935
MELO3C031112.2	Cucurbita pepo (Zucchini)	cpemedB166
MELO3C031112.2	Cucurbita pepo (Zucchini)	cpemedB362
MELO3C031112.2	Cucurbita pepo (Zucchini)	cpemedB685
MELO3C031112.2	Cucurbita pepo (Zucchini)	cpemedB825
MELO3C031112.2	Cucurbita pepo (Zucchini)	cpemedB944
MELO3C031112.2	Wild cucumber (PI 183967)	cpimedB134
MELO3C031112.2	Wild cucumber (PI 183967)	cpimedB219
MELO3C031112.2	Wild cucumber (PI 183967)	cpimedB221
MELO3C031112.2	Cucumber (Chinese Long) v2	cumedB134
MELO3C031112.2	Cucumber (Chinese Long) v2	cumedB218
MELO3C031112.2	Cucumber (Chinese Long) v2	cumedB220
MELO3C031112.2	Melon (DHL92) v3.6.1	medmedB144
MELO3C031112.2	Bottle gourd (USVL1VR-Ls)	lsimedB027
MELO3C031112.2	Bottle gourd (USVL1VR-Ls)	lsimedB375
MELO3C031112.2	Watermelon (Charleston Gray)	medwcgB376
MELO3C031112.2	Watermelon (Charleston Gray)	medwcgB378
MELO3C031112.2	Watermelon (Charleston Gray)	medwcgB390
MELO3C031112.2	Watermelon (97103) v1	medwmB404
MELO3C031112.2	Watermelon (97103) v1	medwmB418
MELO3C031112.2	Silver-seed gourd	carmedB0240
MELO3C031112.2	Silver-seed gourd	carmedB0246
MELO3C031112.2	Silver-seed gourd	carmedB0945
MELO3C031112.2	Silver-seed gourd	carmedB1060
MELO3C031112.2	Cucumber (Chinese Long) v3	cucmedB136
MELO3C031112.2	Cucumber (Chinese Long) v3	cucmedB222
MELO3C031112.2	Cucumber (Chinese Long) v3	cucmedB224
MELO3C031112.2	Watermelon (97103) v2	medwmbB374
MELO3C031112.2	Watermelon (97103) v2	medwmbB378
MELO3C031112.2	Watermelon (97103) v2	medwmbB391
MELO3C031112.2	Wax gourd	medwgoB449
MELO3C031112.2	Wax gourd	medwgoB453