MELO3C031083.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C031083.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein LATERAL ROOT PRIMORDIUM 1
Locationchr05 : 1358228 .. 1362124 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTGAATCTCTTATCTATCGGTTTCGTGGAGCCAACATTCGGTTAGTGAACCTGTGTCGATTTTGCTCTATTTTATTTGTCAGATTCGTAACAATTTTCGGCGTTTAATTTTTTTTCCTCAATTCGCGGTGGCAGATGTCGGCAATAAAGAGGCACTACCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGTGACGGTGTCGGTGGCGGTGGAACCATAAATAATCGGAATGGTTCGTCTTCTTCTCCGCTTGTTGATCCGTCGGATGTTTACAATACTGCCGCCTCCGGCAGCGGCGGCGTTCCGGGTTTTCTTGGTGGATCAAATTATGGTAATCAAATTAGTTGATATATATTATTCTGATTTTCTTAACAGTTCAACGTGCTTCCCCAAATCAATGGGAAGGGAACTAACCAATTATCTTTAGAAAATCTCATTTTATTTATGTCTAATCTGATTGTGTATAACTAATTTCTCTCAACTCTGATCTTGCAACTTTCATTATTAATCGAGTCATTTACTAATCTGGGGGCATCTGTTCTTGAAAATGTTATGAGGATTGGTATCTCTTCTTGCATGCTTCTTATTCTTTTCTTGACTTACAAATCTTCTTGTCTAGGCTAAATCTACAGTGTTTGTTGGTTATTTTATTGCTTAAAATTAGATGAAATCATAGGGATGTGAGTCATCTTATCTTGTGTTCATATTTGTCTTGTGTGCTCTTACTGTTCACTCATGTGCCTAACAATTTATTGTTTTTCAAAGCAATCTCATTTGATACTATCTGCTTTTTTTTAAAAAAAAAAAAAATTCTTGTAATAGTTTAGTTTAATCATGTGGGGGTTTCTGTTGATGGGTATGGAAATATATTCCTAACCTCTGTTGGGTTGGCTTTTTCTTTTTGGTTGGTTTGCTTCTTCGGGAGCTGGAAATGCTGAATTCCATTGTTAGGTGATGGATTTAGCCTTTGGTTTTCTCAAAGCTGCTGAGGTGTCACAATCATAAGATGTTTGAGAAAATGATAACTTTGAAAATGATGTCTTTTTCCCCTTCACTATTCCACTTCTTTTAGTCCACTAACATGTCTTGTTCATTCTTGCTTCTGTTGTATATCTTTTGTGTCCAATTTTGATTTATTGATTGTAAGTTTATGTTCTATATCCTAGAAAACTTCATACTCTACCTATCAATCTTTCTTTCCTCCCTTCTAAATCAATTGTTTCTCTCGTTTCTCGTGCACCGGTTTTCATTTTGCTTCCTTGTTTACCATGCCTTTTTGCTGGGATAATTGCCATCATCATTTCATGTATATATTGTTTGAAGATATGATATTAAATCTGGATTCGCAGGATGGTTGATGTAGAATTAATTTGACACGCCATGTTGTGTATTTATTGTTGACATTTTAGCATCTATTTTGTCTGATGCTAATAGGGCAACAGTCCTTTGAAATGCTGAGTAAGCCCCTTTTGTTTGTTTTAAATAAAAAATTGAAATAATCCATTGTTGTTTGCCATTGTTGACCTAATTCATTTATTATAACAAAGTGGCCTACACATTGAATGCTTGCATTGCGCTTGTTTTAAATGAGGAGTGGATAGATTTTCTCCTTGGATTTCTTTAAGTATTTTCCCAGTGTTGGTACCTTTGGGAACAATCTTAACCTTTGCTCCACCTGCACATTCTGATTGTTCTGTCTGTATTTGAGCATTGAGATGCCACTGCCAGGCTTAAGGGATTAGGAAGCTTAATAATCAAATCTCCATAATGGGAGGATAAGTATTTGTTTTTTTTTTTTTTAGTTTTGTAGTAATTTGAAATTAAGGTTTAAATATTTGATTGATTAGTTCCACTTGCGATTTCTTTATTTCTTGCACATGCATAAAATAGTGGCTTTATTTTTCCTGGATTTCTGGTTTCAACCTTTGGATATTAATATAGGCATGGGGTGAACAATTTTCTTGAAGTATAGAAGAACAAATATTTATTAGGCCTTACTATTTTGTTTTTCTATAGCTGTCGGTGTTCGAGTGGGTTAGGCTTACTTTGGCTAATCTCTCTTGACATTGCGATACTTTAATACATATGGATGTCAAGGAATCTTGTAGGATATTCAACTTTATGTCGATGGTCACCATGATTGAGACTCCGACTCTTTGGTCCCTTAGACCTTAATTTATTTGAATTTATATTTATAGGCTTTCTTCTCTATAGTAAATGGAAAGATATTCCTCCTTTGCTTGCGAGGGCTCATTTATTATACTCTTCCCTTTACATTTTATTTATTTTAATTTATTTTTTGTGTGTAATTATTGCCTTTGGTGCTTCCATTTAGTGGTGTGTTCAGTGTTTCCCAGTTTAGCTAGTCTAAATATTTCACCTACTCCATGAAAAATTGGAGAGTAAGCCTTTTTGTGTATTCATCAAGTCCTCTCTTGCATCCAGGGAGCCAACTAGTTTCATATCATATGTGCTTCTATATCAATTTCATTCCATCTCTTAGACCATTCTTTACTCTAGTCTTGCTCGTTTTATTGCTCGTGTGAAGGAAATTTCAGCCTATAATGCATCTGTATCTCGTTTTACTTTAATTTTGTTCGTTTAATTTGTAACTTTGTGATGTTTTGCATTTGGTTGCATCGTACGGAGTTGTTTTAGATTTGATTTATATGATATTGGAATTAGTTTTTATGTACTGATAAATGACGACACTTATTGCCCTAAAATCGATCTCTCTGATTTATCTTTTTCACACCAAATGTTGTCTTTTTATCTGTGTTTTTTGTGATTTTATGTATGAGGTCTTTTCTTTCTTGTTTGTAGTGGAAGACTTAGGTGTATATTTGTTTCGTTTTTTTGATCGAGACATTATTTTGCTCGTAAAATGAGCTTTGTGAAAGTCTTAAAAAGGAACAATGAAAGAAAATAGAGAGAATTCTATATTTACTTCTCTGAATTCTTTTTCCATTTTGTTTTCACTTTTTTTGTTACCTCTTAATTTGAGTGCAAAATTGACTCTTTTCTATCCTTCAATTTCCTAATTAAGTTGAAGGTTCTTTTTAAATTATTAATCATTACCCATTTTTCTACTTACAGGTATTTAGGGTTTTAGTTGTATACGCTAATCGAATCAATTTTGATGGTGTGAAAAATAACGTACGTCTTTTGAGCAGTGGAAGACATGATGTTATTTAATTAATCAAGGACATAATCTATATGTTTGGATTAAGAATATGGGTTTTTAAGGATTCGATTGCATGATGAATGGTTGATGTTGCATCTCTAAGTGAATATCACTTTTGTATCAACTTTTAAACGTAGTCTATTATTCTTTTCTATAGCTGAATTGACCTTTTGCTATTTTTGTTTTGTTTTCCATCGAAATTTCTCTACGCTTTTCCAACTGTTAGACAAAGTGTTATTGAAGATTTGATTGATTTTTTAGGCTTTTGTTTGGTATTATTTTTCCCTTTGTTTAAGCTGTCTGTCTGTATATGTATAAATATATACTGCTTTTATTTATTGGTTTCTTTGTATTATTGTCTTTTCAACCAGTCTTTTCGTAAGCAAATATTGTGTTTGAATAACACGGATCAGAGTGGATAGGATCGTGCCATCGAGTTAGATGGCTTAGTCGTGAGGCTATGGGTCGTGAGCTTCATGATCTCTTTCCCAAGTTGACGAGGCCGGAAGGAAAAGGGGTGCAAGTGAATTATCATAAGTTTAAAGAGATTTTTTGA

mRNA sequence

ATGCCTTTGAATCTCTTATCTATCGGTTTCGTGGAGCCAACATTCGATGTCGGCAATAAAGAGGCACTACCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGTGACGGTGTCGGTGGCGGTGGAACCATAAATAATCGGAATGGTTCGTCTTCTTCTCCGCTTGTTGATCCGTCGGATGTTTACAATACTGCCGCCTCCGGCAGCGGCGGCGTTCCGGGTTTTCTTGGTGGATCAAATTATGGCTTTCTTCTCTATAAGTGGATAGGATCGTGCCATCGAGTTAGATGGCTTAGTCGTGAGGCTATGGGTCGTGAGCTTCATGATCTCTTTCCCAAGTTGACGAGGCCGGAAGGAAAAGGGGTGCAAGTGAATTATCATAAGTTTAAAGAGATTTTTTGA

Coding sequence (CDS)

ATGCCTTTGAATCTCTTATCTATCGGTTTCGTGGAGCCAACATTCGATGTCGGCAATAAAGAGGCACTACCGGGGCAAATACGAGCACAGGCGGTGTTCAAGTGCGTGAGAGTGACGGCGGTGGACGACGGCGACGACGAGTATGCGTATCATGCGATGGTGAAAATTGGGGGCCATGTGTTCAAAGGATTTTTGTACGATCAAGGCGTTGAAGCCGGAGACGGATTTCCTAATGTATCAGAATTGCATTTAGGTGACGGTGTCGGTGGCGGTGGAACCATAAATAATCGGAATGGTTCGTCTTCTTCTCCGCTTGTTGATCCGTCGGATGTTTACAATACTGCCGCCTCCGGCAGCGGCGGCGTTCCGGGTTTTCTTGGTGGATCAAATTATGGCTTTCTTCTCTATAAGTGGATAGGATCGTGCCATCGAGTTAGATGGCTTAGTCGTGAGGCTATGGGTCGTGAGCTTCATGATCTCTTTCCCAAGTTGACGAGGCCGGAAGGAAAAGGGGTGCAAGTGAATTATCATAAGTTTAAAGAGATTTTTTGA

Protein sequence

MPLNLLSIGFVEPTFDVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGFLLYKWIGSCHRVRWLSREAMGRELHDLFPKLTRPEGKGVQVNYHKFKEIF
Homology
[Close]
BLAST of MELO3C031083.2 vs. NCBI nr
Match: XP_008449658.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 6.5e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083.2 vs. NCBI nr
Match: XP_008449660.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 6.5e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083.2 vs. NCBI nr
Match: XP_008449659.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGF 134
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNY F
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYVF 363

[Close]
BLAST of MELO3C031083.2 vs. NCBI nr
Match: XP_011657617.1 (PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN48103.1 hypothetical protein Csa_6G432270 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 8.2e-47
Identity = 98/117 (83.76%), Postives = 98/117 (83.76%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           D GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 245 DAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 304

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGD                 PLVDPSDVYNTA SGSGGVPGFLGGSNYG
Sbjct: 305 FPNVSELHLGDXXXXXXXXXXXXXXXXXPLVDPSDVYNTAGSGSGGVPGFLGGSNYG 361

[Close]
BLAST of MELO3C031083.2 vs. NCBI nr
Match: XP_022987026.1 (protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima])

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 98/117 (83.76%), Postives = 104/117 (88.89%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           D G KE LPGQIRA AVFKCVRVTAVDDG+DEYAY A+VKIGGHVFKGFLYDQGV+AGDG
Sbjct: 254 DAGFKEELPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVDAGDG 313

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHL D  GGGG+ NNRNG SS+P VDPSDVYN AASG+GG PGFLGGSNYG
Sbjct: 314 FPNVSELHLSD--GGGGSRNNRNG-SSAPFVDPSDVYNVAASGNGGAPGFLGGSNYG 367

[Close]
BLAST of MELO3C031083.2 vs. TAIR10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-29
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 20  KEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNV 79
           +EA PGQ+RA AVFKCVRVTAV+DGDDEYAY A+VKIGGHVFKGFLYDQG+E  +GFP++
Sbjct: 307 REAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSM 366

Query: 80  SELHLGDGVGGGGTINNRNG-SSSSPLVD 108
           S+LHL      GG+ NN NG S+S+P++D
Sbjct: 367 SDLHL------GGSANNHNGVSASAPILD 389

[Close]
BLAST of MELO3C031083.2 vs. TAIR10
Match: AT1G19790.1 (SHI-related sequence 7)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-13
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 23  LPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVS-- 82
           LP +I + AVF+C+RV+++DD D+EYAY   V IGGHVFKG LYDQG  +     + S  
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLN 282

Query: 83  -------ELHLGDGVGGGGT------INNRNGSSSSPLVDPSDVYNTAASG-----SGGV 126
                   L+L D      T      +N  NGS     +DPS +Y   A+      +GG 
Sbjct: 283 GETSHQHHLNLMDSTPSAATTNAVTAVNTNNGS-----IDPSSLYTAVATPFNAFVAGGT 340

[Close]
BLAST of MELO3C031083.2 vs. TAIR10
Match: AT3G51060.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG 70
           +VGN    P ++ + AVF+CVRV++V+DG++E+AY   V IGGH+FKG LYD G
Sbjct: 234 EVGN---FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]
BLAST of MELO3C031083.2 vs. TAIR10
Match: AT5G66350.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG----VE 75
           +VGN    P ++ + AVF+CVRV++VDD ++EYAY   V IGGHVFKG LYDQG      
Sbjct: 210 EVGN---FPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSS 269

Query: 76  AGDGFPNVSELHLGDGVGGGGTINNRN----GSSSSPLVDPSDV 112
           +G G   ++ +  G          + N    GS+S   +DP+ +
Sbjct: 270 SGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASL 310

[Close]
BLAST of MELO3C031083.2 vs. TAIR10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related)

HSP 1 Score: 67.8 bits (164), Expect = 8.0e-12
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 22  ALPGQIRAQAVFKCVRVTAVDD-GDDEYAYHAMVKIGGHVFKGFLYDQGVEA 73
           + PG++ + A+F+CV+++ VDD GD +YAY   V IGGH+FKG LYDQG E+
Sbjct: 196 SFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPES 247

[Close]
BLAST of MELO3C031083.2 vs. Swiss-Prot
Match: sp|Q94CK9|LRP1_ARATH (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.5e-28
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0 

Query: 20  KEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNV 79
           +EA PGQ+RA AVFKCVRVTAV+DGDDEYAY A+VKIGGHVFKGFLYDQG+E  +GFP++
Sbjct: 220 REAWPGQVRAAAVFKCVRVTAVEDGDDEYAYQAVVKIGGHVFKGFLYDQGLEPKEGFPSM 279

Query: 80  SELHLGDGVGGGGTINNRNG-SSSSPLVD 108
           S+LHL      GG+ NN NG S+S+P++D
Sbjct: 280 SDLHL------GGSANNHNGVSASAPILD 302

[Close]
BLAST of MELO3C031083.2 vs. Swiss-Prot
Match: sp|Q9FXH7|SRS7_ARATH (Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.5e-12
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 0 

Query: 23  LPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDGFPNVS-- 82
           LP +I + AVF+C+RV+++DD D+EYAY   V IGGHVFKG LYDQG  +     + S  
Sbjct: 223 LPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSSDHHRYSSSLN 282

Query: 83  -------ELHLGDGVGGGGT------INNRNGSSSSPLVDPSDVYNTAASG-----SGGV 126
                   L+L D      T      +N  NGS     +DPS +Y   A+      +GG 
Sbjct: 283 GETSHQHHLNLMDSTPSAATTNAVTAVNTNNGS-----IDPSSLYTAVATPFNAFVAGGT 340

[Close]
BLAST of MELO3C031083.2 vs. Swiss-Prot
Match: sp|Q9XGX0|SHI_ARATH (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG----VE 75
           +VGN    P ++ + AVF+CVRV++VDD ++EYAY   V IGGHVFKG LYDQG      
Sbjct: 210 EVGN---FPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPAERSS 269

Query: 76  AGDGFPNVSELHLGDGVGGGGTINNRN----GSSSSPLVDPSDV 112
           +G G   ++ +  G          + N    GS+S   +DP+ +
Sbjct: 270 SGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPASL 310

[Close]
BLAST of MELO3C031083.2 vs. Swiss-Prot
Match: sp|Q9SD40|SRS1_ARATH (Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQG 70
           +VGN    P ++ + AVF+CVRV++V+DG++E+AY   V IGGH+FKG LYD G
Sbjct: 234 EVGN---FPAEVSSSAVFRCVRVSSVEDGEEEFAYQTAVSIGGHIFKGILYDLG 284

[Close]
BLAST of MELO3C031083.2 vs. Swiss-Prot
Match: sp|O65517|SRS2_ARATH (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-10
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 22  ALPGQIRAQAVFKCVRVTAVDD-GDDEYAYHAMVKIGGHVFKGFLYDQGVEA 73
           + PG++ + A+F+CV+++ VDD GD +YAY   V IGGH+FKG LYDQG E+
Sbjct: 196 SFPGEVSSDALFRCVKMSGVDDGGDGQYAYQTTVNIGGHLFKGILYDQGPES 247

[Close]
BLAST of MELO3C031083.2 vs. TrEMBL
Match: tr|A0A1S3BMJ0|A0A1S3BMJ0_CUCME (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083.2 vs. TrEMBL
Match: tr|A0A1S3BN66|A0A1S3BN66_CUCME (protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 362

[Close]
BLAST of MELO3C031083.2 vs. TrEMBL
Match: tr|A0A1S3BMI2|A0A1S3BMI2_CUCME (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491474 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 9.6e-60
Identity = 117/118 (99.15%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 246 DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 305

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYGF 134
           FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNY F
Sbjct: 306 FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYVF 363

[Close]
BLAST of MELO3C031083.2 vs. TrEMBL
Match: tr|A0A0A0KF01|A0A0A0KF01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432270 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.4e-47
Identity = 98/117 (83.76%), Postives = 98/117 (83.76%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           D GNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG
Sbjct: 245 DAGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 304

Query: 76  FPNVSELHLGDGVGGGGTINNRNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPNVSELHLGD                 PLVDPSDVYNTA SGSGGVPGFLGGSNYG
Sbjct: 305 FPNVSELHLGDXXXXXXXXXXXXXXXXXPLVDPSDVYNTAGSGSGGVPGFLGGSNYG 361

[Close]
BLAST of MELO3C031083.2 vs. TrEMBL
Match: tr|A0A2C9WDR0|A0A2C9WDR0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G140000 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 81/118 (68.64%), Postives = 90/118 (76.27%), Query Frame = 0 

Query: 16  DVGNKEALPGQIRAQAVFKCVRVTAVDDGDDEYAYHAMVKIGGHVFKGFLYDQGVEAGDG 75
           D   KE LPG +RAQAVFKCVRVTAVDDG+DEYAY A+V IGGHVFKGFLYDQGVE  DG
Sbjct: 236 DASFKETLPGNVRAQAVFKCVRVTAVDDGEDEYAYQAVVNIGGHVFKGFLYDQGVEGRDG 295

Query: 76  FPNVSELHLGDGVGGGGTINN-RNGSSSSPLVDPSDVYNTAASGSGGVPGFLGGSNYG 133
           FPN+SELHLG    GG   +  RNG+SSSP++DPSDVY      SGG  G LGG +YG
Sbjct: 296 FPNISELHLGSANSGGXXXDGVRNGASSSPIIDPSDVY----GASGG--GLLGGLSYG 347

The following BLAST results are available for this feature:
BLAST of MELO3C031083.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449658.16.5e-60100.00PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucumis melo][more]
XP_008449660.16.5e-60100.00PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 [Cucumis melo][more]
XP_008449659.11.4e-5999.15PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucumis melo][more]
XP_011657617.18.2e-4783.76PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus] >KGN48103.1 hypot... [more]
XP_022987026.11.8e-4683.76protein LATERAL ROOT PRIMORDIUM 1-like [Cucurbita maxima][more]
BLAST of MELO3C031083.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G12330.42.5e-2968.54Lateral root primordium (LRP) protein-related[more]
AT1G19790.12.5e-1339.02SHI-related sequence 7[more]
AT3G51060.12.8e-1253.70Lateral root primordium (LRP) protein-related[more]
AT5G66350.12.8e-1239.42Lateral root primordium (LRP) protein-related[more]
AT4G36260.18.0e-1253.85Lateral root primordium (LRP) protein-related[more]
BLAST of MELO3C031083.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q94CK9|LRP1_ARATH4.5e-2868.54Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S... [more]
sp|Q9FXH7|SRS7_ARATH4.5e-1239.02Protein SHI RELATED SEQUENCE 7 OS=Arabidopsis thaliana OX=3702 GN=SRS7 PE=1 SV=1[more]
sp|Q9XGX0|SHI_ARATH5.0e-1139.42Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1[more]
sp|Q9SD40|SRS1_ARATH5.0e-1153.70Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana OX=3702 GN=SRS1 PE=1 SV=2[more]
sp|O65517|SRS2_ARATH1.4e-1053.85Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1[more]
BLAST of MELO3C031083.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BMJ0|A0A1S3BMJ0_CUCME4.3e-60100.00protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3BN66|A0A1S3BN66_CUCME4.3e-60100.00protein LATERAL ROOT PRIMORDIUM 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3BMI2|A0A1S3BMI2_CUCME9.6e-6099.15protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A0A0KF01|A0A0A0KF01_CUCSA5.4e-4783.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G432270 PE=4 SV=1[more]
tr|A0A2C9WDR0|A0A2C9WDR0_MANES1.4e-3468.64Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G140000 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007818SHI
IPR006511SHI_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0009851 auxin biosynthetic process
biological_process GO:0007275 multicellular organism development
biological_process GO:0009733 response to auxin
biological_process GO:0048364 root development
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031083.2.1MELO3C031083.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF05142DUF702coord: 19..71
e-value: 8.6E-23
score: 81.4
NoneNo IPR availablePANTHERPTHR31604:SF2PROTEIN SHI RELATED SEQUENCE 6coord: 16..131
IPR006511SHORT INTERNODES, C-terminalTIGRFAMTIGR01624TIGR01624coord: 23..70
e-value: 1.8E-28
score: 96.2
IPR007818SHI protein familyPANTHERPTHR31604FAMILY NOT NAMEDcoord: 16..131

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C031083.2CmoCh11G008930Cucurbita moschata (Rifu)cmomedB131
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C031083.2Cucumber (Chinese Long) v3cucmedB490
MELO3C031083.2Watermelon (97103) v2medwmbB368
MELO3C031083.2Wax gourdmedwgoB485
MELO3C031083.2Cucumber (Gy14) v2cgybmedB427
MELO3C031083.2Cucumber (Gy14) v1cgymedB097
MELO3C031083.2Cucurbita maxima (Rimu)cmamedB598
MELO3C031083.2Cucurbita maxima (Rimu)cmamedB654
MELO3C031083.2Cucurbita moschata (Rifu)cmomedB585
MELO3C031083.2Cucurbita moschata (Rifu)cmomedB642
MELO3C031083.2Cucurbita pepo (Zucchini)cpemedB324
MELO3C031083.2Cucurbita pepo (Zucchini)cpemedB829
MELO3C031083.2Wild cucumber (PI 183967)cpimedB480
MELO3C031083.2Cucumber (Chinese Long) v2cumedB471
MELO3C031083.2Bottle gourd (USVL1VR-Ls)lsimedB074
MELO3C031083.2Watermelon (Charleston Gray)medwcgB370
MELO3C031083.2Watermelon (97103) v1medwmB408
MELO3C031083.2Silver-seed gourdcarmedB0533
MELO3C031083.2Silver-seed gourdcarmedB0917