MELO3C031069.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C031069.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionlipoxygenase 2, chloroplastic-like
Locationchr05 : 779617 .. 780285 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAAAAGATTCCTCCATGAGTGTATAAATATGGTTAATGATATGTGTTGGTAATAAGGCAGTGAAAGAGTTTGGGTTTTGTGATATTCCAAATTTGTTATATCGTAAACTCCCCAAGGGCAGGAAAGGATGAGTTATACGTGTACTGTAGCTGTTACTGTGAAACCCAAAAGCAAAGATGACTTTCCTTCGAATGAAGTCATAAATCTCGAGTTTGCTAGCGTCAATTTGGATTCGAGTAAGTCCTCATCCTCTCTTTTATTTATTTATATATGTTTTTCTTCACTGCTAATGTAACCTATATATATATTCTTCTGATGTAAAGTGATTTAATAACGCACATATGACATATGTACATATACACAGATGAACAGCCAAAGTTTATCACATGTATTGCTCAATTAAAAAGTGGTAATAATAAAGTGAGCAAGCTGTTCGAAGGTAGTATTGAGGTTGCTAGAGATTTTGGGGAGATTGGAGCAGTGATTGTTGAATTGCATGAACGTACAAAGAATGAGAGGTTTATCGACACCATTTCTGTTGAGGCCGAAGAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATGGGTGCAACCCAAGGGTCTTATTGCCCACCGAAGGATCTTCTTTTCTTCCAACAAGGTGATGGTTTGCTTCATCATTTAA

mRNA sequence

TTGAAAAAGATTCCTCCATGAGTGTATAAATATGGTTAATGATATGTGTTGGTAATAAGGCAGTGAAAGAGTTTGGGTTTTGTGATATTCCAAATTTGTTATATCGTAAACTCCCCAAGGGCAGGAAAGGATGAGTTATACGTGTACTGTAGCTGTTACTGTGAAACCCAAAAGCAAAGATGACTTTCCTTCGAATGAAGTCATAAATCTCGAGTTTGCTAGCGTCAATTTGGATTCGAATGAACAGCCAAAGTTTATCACATGTATTGCTCAATTAAAAAGTGGTAATAATAAAGTGAGCAAGCTGTTCGAAGGTAGTATTGAGGTTGCTAGAGATTTTGGGGAGATTGGAGCAGTGATTGTTGAATTGCATGAACGTACAAAGAATGAGAGGTTTATCGACACCATTTCTGTTGAGGCCGAAGAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATGGGTGCAACCCAAGGGTCTTATTGCCCACCGAAGGATCTTCTTTTCTTCCAACAAGGTGATGGTTTGCTTCATCATTTAA

Coding sequence (CDS)

ATGAGTTATACGTGTACTGTAGCTGTTACTGTGAAACCCAAAAGCAAAGATGACTTTCCTTCGAATGAAGTCATAAATCTCGAGTTTGCTAGCGTCAATTTGGATTCGAATGAACAGCCAAAGTTTATCACATGTATTGCTCAATTAAAAAGTGGTAATAATAAAGTGAGCAAGCTGTTCGAAGGTAGTATTGAGGTTGCTAGAGATTTTGGGGAGATTGGAGCAGTGATTGTTGAATTGCATGAACGTACAAAGAATGAGAGGTTTATCGACACCATTTCTGTTGAGGCCGAAGAGCCTCCAATCTCGGTTACGTTTAGCTGCAAATCATGGGTGCAACCCAAGGGTCTTATTGCCCACCGAAGGATCTTCTTTTCTTCCAACAAGGTGATGGTTTGCTTCATCATTTAA

Protein sequence

MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAHRRIFFSSNKVMVCFII
BLAST of MELO3C031069.2 vs. NCBI nr
Match: XP_016900735.1 (PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 1.5e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60
           MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF
Sbjct: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60

Query: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120
           EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH
Sbjct: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120

Query: 121 RRIFFSSNKVMVCFII 137
           RRIFFSSNKVMVCFII
Sbjct: 121 RRIFFSSNKVMVCFII 136

BLAST of MELO3C031069.2 vs. NCBI nr
Match: XP_008449948.1 (PREDICTED: putative lipoxygenase 5, partial [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 8.0e-39
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSY   V VTVKPK K++FP  E+I L+FASV LDSN QPK FI C AQL+  +  V  K
Sbjct: 1   MSYMGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQPKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISV AEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVVAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

BLAST of MELO3C031069.2 vs. NCBI nr
Match: KGN54126.1 (hypothetical protein Csa_4G286990 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 6.8e-38
Identity = 93/132 (70.45%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSYT TV VT+KPK  + F   E+I L+FASV LDSNEQPK FI C AQL+  +  V  K
Sbjct: 1   MSYTGTVVVTMKPKKDEQFRWVEIIYLKFASVELDSNEQPKEFIKCEAQLQEVDELVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            + G I VA  FGEIGAVIVEL E   NERFIDTISVEAEEPPIS+TFSCKSWVQPKGLI
Sbjct: 61  KYIGEIVVAEGFGEIGAVIVELQEGV-NERFIDTISVEAEEPPISITFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNKV 131
            HRRIFFSSNK+
Sbjct: 121 DHRRIFFSSNKI 131

BLAST of MELO3C031069.2 vs. NCBI nr
Match: XP_004142238.2 (PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 93/131 (70.99%), Postives = 101/131 (77.10%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSYT TV VT+KPK  + F   E+I L+FASV LDSNEQPK FI C AQL+  +  V  K
Sbjct: 1   MSYTGTVVVTMKPKKDEQFRWVEIIYLKFASVELDSNEQPKEFIKCEAQLQEVDELVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            + G I VA  FGEIGAVIVEL E   NERFIDTISVEAEEPPIS+TFSCKSWVQPKGLI
Sbjct: 61  KYIGEIVVAEGFGEIGAVIVELQEGV-NERFIDTISVEAEEPPISITFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
            HRRIFFSSNK
Sbjct: 121 DHRRIFFSSNK 130

BLAST of MELO3C031069.2 vs. NCBI nr
Match: XP_011653578.1 (PREDICTED: LOW QUALITY PROTEIN: lipoxygenase 2, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 3.4e-37
Identity = 90/131 (68.70%), Postives = 102/131 (77.86%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSY  TV VTV PK  + FP  E+I L+FASV LDSNEQPK FI C AQL+  +  V  K
Sbjct: 1   MSYMGTVVVTVIPKKNEQFPWVEIIYLKFASVELDSNEQPKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FG+IGAVIVEL +   NERF+DTISVEAE+PPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGDIKVAEGFGKIGAVIVELQDGV-NERFVDTISVEAEKPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
            HRRIFFSSNK
Sbjct: 121 DHRRIFFSSNK 130

BLAST of MELO3C031069.2 vs. TAIR10
Match: AT3G45140.1 (lipoxygenase 2)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 25/72 (34.72%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 60  FEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIA 119
           +E   E+  DFG +GA+ ++     +  R +    VE + P  S+TF+C+SWV PK +  
Sbjct: 137 YECEFEMPEDFGPVGAIKIQ----NQYHRQLFLKGVELKLPGGSITFTCESWVAPKSVDP 196

Query: 120 HRRIFFSSNKVM 132
            +RIFFS    +
Sbjct: 197 TKRIFFSDKSYL 204

BLAST of MELO3C031069.2 vs. Swiss-Prot
Match: sp|P38418|LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 4.0e-05
Identity = 25/72 (34.72%), Postives = 40/72 (55.56%), Query Frame = 0

Query: 60  FEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIA 119
           +E   E+  DFG +GA+ ++     +  R +    VE + P  S+TF+C+SWV PK +  
Sbjct: 137 YECEFEMPEDFGPVGAIKIQ----NQYHRQLFLKGVELKLPGGSITFTCESWVAPKSVDP 196

Query: 120 HRRIFFSSNKVM 132
            +RIFFS    +
Sbjct: 197 TKRIFFSDKSYL 204

BLAST of MELO3C031069.2 vs. TrEMBL
Match: tr|A0A1S4DYE1|A0A1S4DYE1_CUCME (lipoxygenase 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107991007 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.9e-70
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60
           MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF
Sbjct: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60

Query: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120
           EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH
Sbjct: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120

Query: 121 RRIFFSSNKVMVCFII 137
           RRIFFSSNKVMVCFII
Sbjct: 121 RRIFFSSNKVMVCFII 136

BLAST of MELO3C031069.2 vs. TrEMBL
Match: tr|A0A1S3BP51|A0A1S3BP51_CUCME (putative lipoxygenase 5 OS=Cucumis melo OX=3656 GN=LOC103491677 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.3e-39
Identity = 94/131 (71.76%), Postives = 103/131 (78.63%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSY   V VTVKPK K++FP  E+I L+FASV LDSN QPK FI C AQL+  +  V  K
Sbjct: 1   MSYMGNVVVTVKPKKKEEFPWVEIIYLKFASVELDSNGQPKEFIKCEAQLQEVDESVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            ++G I+VA  FGEIGAVIVEL E   NERFIDTISV AEEPPISVTFSCKSWVQPKGLI
Sbjct: 61  KYKGEIKVAEGFGEIGAVIVELQEGV-NERFIDTISVVAEEPPISVTFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNK 130
           AHRRIFFSSNK
Sbjct: 121 AHRRIFFSSNK 130

BLAST of MELO3C031069.2 vs. TrEMBL
Match: tr|A0A0A0L1V1|A0A0A0L1V1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286990 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.5e-38
Identity = 93/132 (70.45%), Postives = 102/132 (77.27%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPK-FITCIAQLKSGNNKVS-K 60
           MSYT TV VT+KPK  + F   E+I L+FASV LDSNEQPK FI C AQL+  +  V  K
Sbjct: 1   MSYTGTVVVTMKPKKDEQFRWVEIIYLKFASVELDSNEQPKEFIKCEAQLQEVDELVEYK 60

Query: 61  LFEGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLI 120
            + G I VA  FGEIGAVIVEL E   NERFIDTISVEAEEPPIS+TFSCKSWVQPKGLI
Sbjct: 61  KYIGEIVVAEGFGEIGAVIVELQEGV-NERFIDTISVEAEEPPISITFSCKSWVQPKGLI 120

Query: 121 AHRRIFFSSNKV 131
            HRRIFFSSNK+
Sbjct: 121 DHRRIFFSSNKI 131

BLAST of MELO3C031069.2 vs. TrEMBL
Match: tr|A0A0A0KX73|A0A0A0KX73_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287550 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.5e-25
Identity = 67/99 (67.68%), Postives = 79/99 (79.80%), Query Frame = 0

Query: 36  SNEQPK-FITCIAQLKSGNNKVS-KLFEGSIEVARDFGEIGAVIVELHERTKNERFIDTI 95
           ++EQPK FI C AQL+  +  V  K ++G I+VA  FG+IGAVIVEL +   NERF+DTI
Sbjct: 20  ADEQPKEFIKCEAQLQEVDESVEYKKYKGDIKVAEGFGKIGAVIVELQDGV-NERFVDTI 79

Query: 96  SVEAEEPPISVTFSCKSWVQPKGLIAHRRIFFSSNKVMV 133
           SVEAE+PPISVTFSCKSWVQPKGLI HRRIFFSSNK  +
Sbjct: 80  SVEAEKPPISVTFSCKSWVQPKGLIDHRRIFFSSNKCRI 117

BLAST of MELO3C031069.2 vs. TrEMBL
Match: tr|A0A0A0KZ89|A0A0A0KZ89_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287020 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 71/123 (57.72%), Postives = 84/123 (68.29%), Query Frame = 0

Query: 1   MSYTCTVAVTVKPKSKDDFPSNEVINLEFASVNLDSNEQPKFITCIAQLKSGNNKVSKLF 60
           MSY  TV VTV PK  + F + EVI LEF SV LDS    + I C A LK G + VSKLF
Sbjct: 1   MSYKGTVTVTVNPKKNEAFLTIEVIYLEFVSVELDSKGNQQIIGCTAGLKCGGD-VSKLF 60

Query: 61  EGSIEVARDFGEIGAVIVELHERTKNERFIDTISVEAEEPPISVTFSCKSWVQPKGLIAH 120
           E SI+V  DFGEIGAVIVEL +  K ERFIDTI+++ ++  + +TFSCKSWVQPK   A 
Sbjct: 61  ETSIDVPGDFGEIGAVIVELDDDVK-ERFIDTITIDFKKCTL-LTFSCKSWVQPKNKHAE 120

Query: 121 RRI 124
            RI
Sbjct: 121 ERI 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016900735.11.5e-69100.00PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis melo][more]
XP_008449948.18.0e-3971.76PREDICTED: putative lipoxygenase 5, partial [Cucumis melo][more]
KGN54126.16.8e-3870.45hypothetical protein Csa_4G286990 [Cucumis sativus][more]
XP_004142238.21.5e-3770.99PREDICTED: lipoxygenase 2, chloroplastic-like [Cucumis sativus][more]
XP_011653578.13.4e-3768.70PREDICTED: LOW QUALITY PROTEIN: lipoxygenase 2, chloroplastic-like [Cucumis sati... [more]
Match NameE-valueIdentityDescription
AT3G45140.12.2e-0634.72lipoxygenase 2[more]
Match NameE-valueIdentityDescription
sp|P38418|LOX2_ARATH4.0e-0534.72Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LOX2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S4DYE1|A0A1S4DYE1_CUCME9.9e-70100.00lipoxygenase 2, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107991007 PE=4 ... [more]
tr|A0A1S3BP51|A0A1S3BP51_CUCME5.3e-3971.76putative lipoxygenase 5 OS=Cucumis melo OX=3656 GN=LOC103491677 PE=4 SV=1[more]
tr|A0A0A0L1V1|A0A0A0L1V1_CUCSA4.5e-3870.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G286990 PE=4 SV=1[more]
tr|A0A0A0KX73|A0A0A0KX73_CUCSA1.5e-2567.68Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287550 PE=4 SV=1[more]
tr|A0A0A0KZ89|A0A0A0KZ89_CUCSA1.1e-2357.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G287020 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0046872metal ion binding
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: INTERPRO
TermDefinition
IPR036392PLAT/LH2_dom_sf
IPR000907LipOase
IPR001024PLAT/LH2_dom
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031069.2.1MELO3C031069.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001024PLAT/LH2 domainSMARTSM00308LH2_4coord: 3..127
e-value: 0.0048
score: 6.1
IPR001024PLAT/LH2 domainPFAMPF01477PLATcoord: 63..125
e-value: 4.6E-5
score: 23.9
IPR001024PLAT/LH2 domainPROSITEPS50095PLATcoord: 5..126
score: 15.727
NoneNo IPR availableGENE3DG3DSA:2.60.60.20coord: 8..133
e-value: 1.1E-14
score: 56.5
NoneNo IPR availablePANTHERPTHR11771:SF65SUBFAMILY NOT NAMEDcoord: 25..128
IPR000907LipoxygenasePANTHERPTHR11771LIPOXYGENASEcoord: 25..128
IPR036392PLAT/LH2 domain superfamilySUPERFAMILYSSF49723Lipase/lipooxygenase domain (PLAT/LH2 domain)coord: 24..127

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C031069.2CsaV3_4G023850Cucumber (Chinese Long) v3cucmedB286
The following gene(s) are paralogous to this gene:

None