MELO3C031061.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C031061.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr05 : 679246 .. 679540 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATTAAAATGGAGTCTCATCAAATATGGCGTCAAATGAAAAGCCATGAATATGATCATCACCGTCGGTTTCAATCAGAAAGTCAGGTGGATCTGACACTCCGACTTGGATTTCCCAATGGCAGTGCCGGTGAACGTCCTGATATTGATCATCATCATAATAATAATCCATTCTTCTCCACACCATTTCATGCTCTTCAAACCCATCAGGTTTGCTATTAATTTAATTTAATTTGCTTCTCATTTATTATTGTTTCTTATTTATTTTATGAACAGTTATTTGAATTTGCATGA

mRNA sequence

AAAAATTAAAATGGAGTCTCATCAAATATGGCGTCAAATGAAAAGCCATGAATATGATCATCACCGTCGGTTTCAATCAGAAAGTCAGGTGGATCTGACACTCCGACTTGGATTTCCCAATGGCAGTGCCGGTGAACGTCCTGATATTGATCATCATCATAATAATAATCCATTCTTCTCCACACCATTTCATGCTCTTCAAACCCATCAGTTATTTGAATTTGCATGA

Coding sequence (CDS)

ATGGAGTCTCATCAAATATGGCGTCAAATGAAAAGCCATGAATATGATCATCACCGTCGGTTTCAATCAGAAAGTCAGGTGGATCTGACACTCCGACTTGGATTTCCCAATGGCAGTGCCGGTGAACGTCCTGATATTGATCATCATCATAATAATAATCCATTCTTCTCCACACCATTTCATGCTCTTCAAACCCATCAGTTATTTGAATTTGCATGA

Protein sequence

MESHQIWRQMKSHEYDHHRRFQSESQVDLTLRLGFPNGSAGERPDIDHHHNNNPFFSTPFHALQTHQLFEFA

Homology

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BLAST of MELO3C031061.2 vs. NCBI nr
Match: XP_022153837.1 (GATA transcription factor 29 [Momordica charantia] >XP_022153838.1 GATA transcription factor 29 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 3.6e-06
Identity = 39/69 (56.52%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MESHQIWRQMKSHEYDHHRRFQSESQVDLTLRLGFPNGSAGERPDIDHHHNNNPFFSTPF 60
          MES Q+WR          R  +SESQVDLTLRLGFPNG+ G  PD DH  +N P FS P 
Sbjct: 1  MES-QLWR----------RFLRSESQVDLTLRLGFPNGNGG-HPD-DHTDHNKPLFSPPL 56

Query: 61 HAL-QTHQL 69
          H L QTHQ+
Sbjct: 61 HHLRQTHQV 56

The following BLAST results are available for this feature:

BLAST of MELO3C031061.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153837.1	3.6e-06	56.52	GATA transcription factor 29 [Momordica charantia] >XP_022153838.1 GATA transcri...	[more]

BLAST of MELO3C031061.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C031061.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C031061.2 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042967	acyl-carrier-protein biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005835	fatty acid synthase complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004318	enoyl-[acyl-carrier-protein] reductase (NADH) activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031061.2.1	MELO3C031061.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C031061.2	CmaCh20G000570	Cucurbita maxima (Rimu)	cmamedB598
MELO3C031061.2	CmoCh20G000600	Cucurbita moschata (Rifu)	cmomedB585
MELO3C031061.2	Lsi10G010100	Bottle gourd (USVL1VR-Ls)	lsimedB074
MELO3C031061.2	Cla003202	Watermelon (97103) v1	medwmB408
MELO3C031061.2	ClCG02G023670	Watermelon (Charleston Gray)	medwcgB370
MELO3C031061.2	Cla97C02G049790	Watermelon (97103) v2	medwmbB368
MELO3C031061.2	Bhi10G000308	Wax gourd	medwgoB485
MELO3C031061.2	Carg06927	Silver-seed gourd	carmedB0533
MELO3C031061.2	CsaV3_4G023730	Cucumber (Chinese Long) v3	cucmedB286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C031061.2	Cucumber (Gy14) v2	cgybmedB247
MELO3C031061.2	Cucumber (Gy14) v1	cgymedB255
MELO3C031061.2	Cucurbita maxima (Rimu)	cmamedB392
MELO3C031061.2	Cucurbita maxima (Rimu)	cmamedB654
MELO3C031061.2	Cucurbita moschata (Rifu)	cmomedB380
MELO3C031061.2	Cucurbita moschata (Rifu)	cmomedB642
MELO3C031061.2	Cucurbita pepo (Zucchini)	cpemedB324
MELO3C031061.2	Cucurbita pepo (Zucchini)	cpemedB829
MELO3C031061.2	Wild cucumber (PI 183967)	cpimedB283
MELO3C031061.2	Wild cucumber (PI 183967)	cpimedB550
MELO3C031061.2	Cucumber (Chinese Long) v2	cumedB279
MELO3C031061.2	Melon (DHL92) v3.6.1	medmedB090
MELO3C031061.2	Bottle gourd (USVL1VR-Ls)	lsimedB076
MELO3C031061.2	Watermelon (97103) v1	medwmB392
MELO3C031061.2	Silver-seed gourd	carmedB0917