MELO3C030935.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030935.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Transcription factor GTE10
Location	chr04 : 25227549 .. 25229289 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTATTTACGGGAAAAATGTAAATTAAAAACCGGTAATAAATATTAATAGACATCTATCAACCTAGCTCTTAGTAATAGATTTGTGTCTATTTCTATTGACAATATTAATAATAGACTTTTATATTTAGTTTCTATTACTGATAGACATTAATATACTTCTATTCAATGTCTACCAGTAATAGACTCATATCAGTTCCTATATTGATAAACTTCAATCAACGTTACCGTAAGGAATGTAGAAATTTTTGCTATAACTTGAGGCATATGGAGCACCGACTAGACTAAGACTATAATGTCTATATTTTGCTACAGTCAACACTATTTCAAAACTCTCGCTTGCTATAATATTTATTATTTGTTTCAGTTTTTAACATTCACAATTTTTCTATTATTTGCTACAATGTTTACTATTTTCTTATCAAACAAAAATAGTTTACAATTCAAACACATACTATTATAAATCCAAACTAAAACAATCTATATTACAAACAAAAAATATTATAGCCAAACTATAATAACCTAAACCCATTATAACCAACTCCTTGTCCATACGCCCAACTAAAAAGTTTTAACCCATTTTCCTATATTTAAAAAGTTCCTATTAAAATATAGAGAATTTTTTTAATTTATATCCTTAAAATTTGGAGTTCATATGAATTTAAACCTTAAACTAATAATTGTATTCATTTAAATATTGAACTTTAAGAGATATAATATAAATCTCAAAATAATAATTGTATCAAGTTAAACTCTAAGGGGACGTTTGGGGGAAGTGTTAGGGTCATGTAATCCAACCCTCATTTGAGGGAAGAGTTATGTAACCCTAGTTTTAGCCCCTTAACCCTTCCTCAACCCTTCTTTAACCCTTCCTCAACCCTTCCTTAACCCTTCTTCAACACTTCTTAACCCTTTTTCAACTTTTCCTTAACTCTTATTCAACTCTTCCTTAATCCATTTTGTTTTCATTTATAATTTTTATATTTATGAGTTTTGTTAATTTTAATCTTTTTCTTTTAAAATCATAGCTTATTTTTAAGTTATGAATTTCACTACAAGAAATCGGAATTTTCCCGACGCCGAAAAACGTCGGGGGAAGTGAAAAATACGTCGGGAAAGGAGCTCCCGACGCAGTCCTCGGCGTCGGGACAAACGTCGAGTCGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGACAAGCCTCTCCCAAAGCAGTCTTTCCCGACGCAATCCACGACGCCCGACGCCATGTACTGCGTCGGGAAAGCCTCCCCCGACAGGCTTTACCGTACAGCTTTGTTAAGGAACCGTTTTGCCGACACTATATTGAAAGCTCGAGAAAAGCACTTGAAAAGGTTTGTTAAACTTGAGATTTTTCTTGTTTGTCCAATGTTAGGCCAACCCTATGATGCACAGACGCACACATATTATTCAATGAAAGTTGTTTCAATAAAAAAAAATTCATTTAAGATATAATTGTTTTGAAAGTTATTGACTGACTTAGCTACAGGGTGACAAACGCGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAACGTTGGCGGCGAGCTACGGACGGAGGAAGGCTGAAGCTGAAGTTGCAGTCACGGCGACGGACGACAATGACGATGGAAGAGACGACGGCGAGCTACGGACAGCGACGAATGTTTCTCTCTTCTCCGAACTCTTTCCCTTTCGTTTTCAGTTCTGTGTAA

mRNA sequence

ATGCTATTTACGGGAAAAATCTTATTTTTAAGTTATGAATTTCACTACAAGAAATCGGAATTTTCCCGACGCCGAAAAACGTCGGGGGAAGTGAAAAATACGTCGGGAAAGGAGCTCCCGACGCAGTCCTCGGCGTCGGGACAAACGTCGAGTCGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGACAAGCCTCTCCCAAAGCAGTCTTTCCCGACGCAATCCACGACGCCCGACGCCATGTACTGCGTCGGGAAAGCCTCCCCCGACAGGCTTTACCGTACAGCTTTGTTAAGGAACCGTTTTGCCGACACTATATTGAAAGCTCGAGAAAAGCACTTGAAAAGGTTTGTTAAACTTGAGATTTTTCTTGTTTGTCCAATGTTAGGCCAACCCTATGATGCACAGACGCACACATATTATTCAATGAAAGGTGACAAACGCGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAACGTTGGCGGCGAGCTACGGACGGAGGAAGGCTGAAGCTGAAGTTGCAGTCACGGCGACGGACGACAATGACGATGGAAGAGACGACGGCGAGCTACGGACAGCGACGAATGTTTCTCTCTTCTCCGAACTCTTTCCCTTTCGTTTTCAGTTCTGTGTAA

Coding sequence (CDS)

ATGCTATTTACGGGAAAAATCTTATTTTTAAGTTATGAATTTCACTACAAGAAATCGGAATTTTCCCGACGCCGAAAAACGTCGGGGGAAGTGAAAAATACGTCGGGAAAGGAGCTCCCGACGCAGTCCTCGGCGTCGGGACAAACGTCGAGTCGGGATAGGCTTTCCCGACGCTGTGTTGGTCACGCGTCGGACAAGCCTCTCCCAAAGCAGTCTTTCCCGACGCAATCCACGACGCCCGACGCCATGTACTGCGTCGGGAAAGCCTCCCCCGACAGGCTTTACCGTACAGCTTTGTTAAGGAACCGTTTTGCCGACACTATATTGAAAGCTCGAGAAAAGCACTTGAAAAGGTTTGTTAAACTTGAGATTTTTCTTGTTTGTCCAATGTTAGGCCAACCCTATGATGCACAGACGCACACATATTATTCAATGAAAGGTGACAAACGCGATCCTGAAAAAGTGAGAATGGAGAGAGAAGAACTTGAAAGACAGCAAAGAGAACGTTGGCGGCGAGCTACGGACGGAGGAAGGCTGAAGCTGAAGTTGCAGTCACGGCGACGGACGACAATGACGATGGAAGAGACGACGGCGAGCTACGGACAGCGACGAATGTTTCTCTCTTCTCCGAACTCTTTCCCTTTCGTTTTCAGTTCTGTGTAA

Protein sequence

MLFTGKILFLSYEFHYKKSEFSRRRKTSGEVKNTSGKELPTQSSASGQTSSRDRLSRRCVGHASDKPLPKQSFPTQSTTPDAMYCVGKASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKGDKRDPEKVRMEREELERQQRERWRRATDGGRLKLKLQSRRRTTMTMEETTASYGQRRMFLSSPNSFPFVFSSV

Homology

[Close]

BLAST of MELO3C030935.2 vs. NCBI nr
Match: ADN33877.1 (global transcription factor [Cucumis melo subsp. melo])

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-06
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 80  PDAMYCVGKASPDRLYRTALLRNRFADTILKAREKHLKR 119
           PDAMY V KASP RLYR ALLRNRF DTILKAREK +++
Sbjct: 105 PDAMYYVEKASPHRLYRAALLRNRFLDTILKAREKAVEK 143

[Close]

BLAST of MELO3C030935.2 vs. NCBI nr
Match: XP_022932929.1 (transcription factor GTE10-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-06
Identity = 37/70 (52.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 593 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 634

Query: 148 DKRDPEKVRM 158
           DKRDPEKVRM
Sbjct: 653 DKRDPEKVRM 634

[Close]

BLAST of MELO3C030935.2 vs. NCBI nr
Match: XP_022932932.1 (transcription factor GTE10-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-06
Identity = 37/70 (52.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 588 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 629

Query: 148 DKRDPEKVRM 158
           DKRDPEKVRM
Sbjct: 648 DKRDPEKVRM 629

[Close]

BLAST of MELO3C030935.2 vs. NCBI nr
Match: XP_022965622.1 (transcription factor GTE10-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-06
Identity = 37/70 (52.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 593 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 634

Query: 148 DKRDPEKVRM 158
           DKRDPEKVRM
Sbjct: 653 DKRDPEKVRM 634

[Close]

BLAST of MELO3C030935.2 vs. NCBI nr
Match: XP_022965631.1 (transcription factor GTE10-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 5.0e-06
Identity = 37/70 (52.86%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 588 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 629

Query: 148 DKRDPEKVRM 158
           DKRDPEKVRM
Sbjct: 648 DKRDPEKVRM 629

[Close]

BLAST of MELO3C030935.2 vs. TAIR10
Match: AT5G63320.1 (nuclear protein X1)

HSP 1 Score: 48.1 bits (113), Expect = 7.9e-06
Identity = 31/85 (36.47%), Postives = 39/85 (45.88%), Query Frame = 0


Query: 74  PTQSTTPDAMYCVGKASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQ 133
           P + T P     +   SPD+ YR A L+NRFADTI+KAREK                   
Sbjct: 539 PDEETAPPERQ-ISPDSPDKRYRAAFLKNRFADTIMKAREKAF----------------- 594

Query: 134 PYDAQTHTYYSMKGDKRDPEKVRME 159
                       KG+K DPEK+R+E
Sbjct: 599 -----------TKGEKGDPEKLRIE 594

[Close]

BLAST of MELO3C030935.2 vs. Swiss-Prot
Match: sp|Q9FGW9|GTE10_ARATH (Transcription factor GTE10 OS=Arabidopsis thaliana OX=3702 GN=GTE10 PE=1 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 31/85 (36.47%), Postives = 39/85 (45.88%), Query Frame = 0


Query: 74  PTQSTTPDAMYCVGKASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQ 133
           P + T P     +   SPD+ YR A L+NRFADTI+KAREK                   
Sbjct: 539 PDEETAPPERQ-ISPDSPDKRYRAAFLKNRFADTIMKAREKAF----------------- 594

Query: 134 PYDAQTHTYYSMKGDKRDPEKVRME 159
                       KG+K DPEK+R+E
Sbjct: 599 -----------TKGEKGDPEKLRIE 594

[Close]

BLAST of MELO3C030935.2 vs. TrEMBL
Match: tr|E5GBN5|E5GBN5_CUCME (Global transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0


Query: 80  PDAMYCVGKASPDRLYRTALLRNRFADTILKAREKHLKR 119
           PDAMY V KASP RLYR ALLRNRF DTILKAREK +++
Sbjct: 105 PDAMYYVEKASPHRLYRAALLRNRFLDTILKAREKAVEK 143

[Close]

BLAST of MELO3C030935.2 vs. TrEMBL
Match: tr|A0A1S3CN17|A0A1S3CN17_CUCME (transcription factor GTE10 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502334 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 36/69 (52.17%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 593 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 633

Query: 148 DKRDPEKVR 157
           DKRDPEKVR
Sbjct: 653 DKRDPEKVR 633

[Close]

BLAST of MELO3C030935.2 vs. TrEMBL
Match: tr|A0A1S3CLH5|A0A1S3CLH5_CUCME (transcription factor GTE10 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502334 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 36/69 (52.17%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 587 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 627

Query: 148 DKRDPEKVR 157
           DKRDPEKVR
Sbjct: 647 DKRDPEKVR 627

[Close]

BLAST of MELO3C030935.2 vs. TrEMBL
Match: tr|A0A1S3CLN0|A0A1S3CLN0_CUCME (transcription factor GTE10 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502334 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 36/69 (52.17%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 592 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 632

Query: 148 DKRDPEKVR 157
           DKRDPEKVR
Sbjct: 652 DKRDPEKVR 632

[Close]

BLAST of MELO3C030935.2 vs. TrEMBL
Match: tr|A0A1S4E4P8|A0A1S4E4P8_CUCME (transcription factor GTE10 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502334 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 36/69 (52.17%), Postives = 38/69 (55.07%), Query Frame = 0


Query: 88  KASPDRLYRTALLRNRFADTILKAREKHLKRFVKLEIFLVCPMLGQPYDAQTHTYYSMKG 147
           + SPDRLYR ALLRNRFADTILKAREK L+                            KG
Sbjct: 588 QVSPDRLYRAALLRNRFADTILKAREKALE----------------------------KG 628

Query: 148 DKRDPEKVR 157
           DKRDPEKVR
Sbjct: 648 DKRDPEKVR 628

The following BLAST results are available for this feature:

BLAST of MELO3C030935.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN33877.1	5.0e-06	76.92	global transcription factor [Cucumis melo subsp. melo]	[more]
XP_022932929.1	5.0e-06	52.86	transcription factor GTE10-like isoform X1 [Cucurbita moschata]	[more]
XP_022932932.1	5.0e-06	52.86	transcription factor GTE10-like isoform X2 [Cucurbita moschata]	[more]
XP_022965622.1	5.0e-06	52.86	transcription factor GTE10-like isoform X1 [Cucurbita maxima]	[more]
XP_022965631.1	5.0e-06	52.86	transcription factor GTE10-like isoform X2 [Cucurbita maxima]	[more]

BLAST of MELO3C030935.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63320.1	7.9e-06	36.47	nuclear protein X1	[more]

BLAST of MELO3C030935.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9FGW9\|GTE10_ARATH	1.4e-04	36.47	Transcription factor GTE10 OS=Arabidopsis thaliana OX=3702 GN=GTE10 PE=1 SV=2	[more]

BLAST of MELO3C030935.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GBN5\|E5GBN5_CUCME	3.3e-06	76.92	Global transcription factor OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S3CN17\|A0A1S3CN17_CUCME	1.2e-05	52.17	transcription factor GTE10 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502334 PE...	[more]
tr\|A0A1S3CLH5\|A0A1S3CLH5_CUCME	1.2e-05	52.17	transcription factor GTE10 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502334 PE...	[more]
tr\|A0A1S3CLN0\|A0A1S3CLN0_CUCME	1.2e-05	52.17	transcription factor GTE10 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502334 PE...	[more]
tr\|A0A1S4E4P8\|A0A1S4E4P8_CUCME	1.2e-05	52.17	transcription factor GTE10 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502334 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0051365	cellular response to potassium ion starvation
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030935.2.1	MELO3C030935.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..54

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030935.2	Cucurbita pepo (Zucchini)	cpemedB615
MELO3C030935.2	Cucurbita pepo (Zucchini)	cpemedB673
MELO3C030935.2	Wild cucumber (PI 183967)	cpimedB193
MELO3C030935.2	Cucumber (Chinese Long) v2	cumedB193
MELO3C030935.2	Bottle gourd (USVL1VR-Ls)	lsimedB273
MELO3C030935.2	Watermelon (Charleston Gray)	medwcgB309
MELO3C030935.2	Watermelon (97103) v1	medwmB344
MELO3C030935.2	Silver-seed gourd	carmedB0211
MELO3C030935.2	Silver-seed gourd	carmedB0822
MELO3C030935.2	Cucumber (Chinese Long) v3	cucmedB198
MELO3C030935.2	Watermelon (97103) v2	medwmbB305
MELO3C030935.2	Wax gourd	medwgoB375
MELO3C030935.2	Cucumber (Gy14) v2	cgybmedB173
MELO3C030935.2	Cucumber (Gy14) v1	cgymedB311
MELO3C030935.2	Cucumber (Gy14) v1	cgymedB312
MELO3C030935.2	Cucurbita maxima (Rimu)	cmamedB257
MELO3C030935.2	Cucurbita maxima (Rimu)	cmamedB489
MELO3C030935.2	Cucurbita moschata (Rifu)	cmomedB239
MELO3C030935.2	Cucurbita moschata (Rifu)	cmomedB374
MELO3C030935.2	Cucurbita moschata (Rifu)	cmomedB473
MELO3C030935.2	Cucurbita moschata (Rifu)	cmomedB476