MELO3C030932.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030932.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	keratin, type I cytoskeletal 9-like
Location	chr04 : 24965336 .. 24965623 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

AtGACGGACAAAATTTTGGGATTTATGTTTTTTATGAATGGTAATATGATTGATGATATTGATGGAATCGATTATGACCAACCAGCTTGTGGAGGTTTTACCATAAGTGTAAACAATGGAATTGTCTTTGAACAATTTATTGAAATCGTAGGATCATCAGTTGGTATAGATATACGCATAAGTGATATAGAAATTATATATAGACATCCAAATCTAACTCCCTCGGGACTAATAAGGTTTATGTCATTCCCTATACCAAATGACCAAGCAAAGAAAACTATGTTTTAA

mRNA sequence

AtGACGGACAAAATTTTGGGATTTATGTTTTTTATGAATGGTAATATGATTGATGATATTGATGGAATCGATTATGACCAACCAGCTTGTGGAGGTTTTACCATAAGTGTAAACAATGGAATTGTCTTTGAACAATTTATTGAAATCGTAGGATCATCAGTTGGTATAGATATACGCATAAGTGATATAGAAATTATATATAGACATCCAAATCTAACTCCCTCGGGACTAATAAGGTTTATGTCATTCCCTATACCAAATGACCAAGCAAAGAAAACTATGTTTTAA

Coding sequence (CDS)

AtGACGGACAAAATTTTGGGATTTATGTTTTTTATGAATGGTAATATGATTGATGATATTGATGGAATCGATTATGACCAACCAGCTTGTGGAGGTTTTACCATAAGTGTAAACAATGGAATTGTCTTTGAACAATTTATTGAAATCGTAGGATCATCAGTTGGTATAGATATACGCATAAGTGATATAGAAATTATATATAGACATCCAAATCTAACTCCCTCGGGACTAATAAGGTTTATGTCATTCCCTATACCAAATGACCAAGCAAAGAAAACTATGTTTTAA

Protein sequence

MTDKILGFMFFMNGNMIDDIDGIDYDQPACGGFTISVNNGIVFEQFIEIVGSSVGIDIRISDIEIIYRHPNLTPSGLIRFMSFPIPNDQAKKTMF

Homology

[Close]

BLAST of MELO3C030932.2 vs. NCBI nr
Match: XP_016902058.1 (PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 2   TDKILGFMFFMNGNMIDDIDGIDYDQPACGGFTISVNNGIVFEQFIEIVGSSVGIDIRIS 61
           T+K + F+ F NG+MI+ +DG+DYDQP CG F+I+ N+ IVFEQF+++VG S+G+D+  S
Sbjct: 198 TNKYVSFLLFTNGHMINGVDGVDYDQPPCGNFSINWNSRIVFEQFLQMVGLSLGVDMSSS 257

[Close]

BLAST of MELO3C030932.2 vs. NCBI nr
Match: ADN34152.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 68.2 bits (165), Expect = 1.8e-08
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 49 IVGSSVGIDIRISDIEIIYRHPNLTPSGLIRFMSFPIPNDQAKKTMF 96
          +VG S+G+D+  S IEIIYRHPNLT SG +RFMSFPI N+Q   TMF
Sbjct: 1  MVGLSLGVDMNSSQIEIIYRHPNLTASGTVRFMSFPISNEQEMNTMF 47

[Close]

BLAST of MELO3C030932.2 vs. TrEMBL
Match: tr|A0A1S4E1F9|A0A1S4E1F9_CUCME (keratin, type I cytoskeletal 9-like OS=Cucumis melo OX=3656 GN=LOC107991514 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 2   TDKILGFMFFMNGNMIDDIDGIDYDQPACGGFTISVNNGIVFEQFIEIVGSSVGIDIRIS 61
           T+K + F+ F NG+MI+ +DG+DYDQP CG F+I+ N+ IVFEQF+++VG S+G+D+  S
Sbjct: 198 TNKYVSFLLFTNGHMINGVDGVDYDQPPCGNFSINWNSRIVFEQFLQMVGLSLGVDMSSS 257

[Close]

BLAST of MELO3C030932.2 vs. TrEMBL
Match: tr|E5GCF3|E5GCF3_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.2e-08
Identity = 31/47 (65.96%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 49 IVGSSVGIDIRISDIEIIYRHPNLTPSGLIRFMSFPIPNDQAKKTMF 96
          +VG S+G+D+  S IEIIYRHPNLT SG +RFMSFPI N+Q   TMF
Sbjct: 1  MVGLSLGVDMNSSQIEIIYRHPNLTASGTVRFMSFPISNEQEMNTMF 47

The following BLAST results are available for this feature:

BLAST of MELO3C030932.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902058.1	3.8e-11	53.33	PREDICTED: keratin, type I cytoskeletal 9-like [Cucumis melo]	[more]
ADN34152.1	1.8e-08	65.96	hypothetical protein [Cucumis melo subsp. melo]	[more]

BLAST of MELO3C030932.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C030932.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030932.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E1F9\|A0A1S4E1F9_CUCME	2.5e-11	53.33	keratin, type I cytoskeletal 9-like OS=Cucumis melo OX=3656 GN=LOC107991514 PE=4...	[more]
tr\|E5GCF3\|E5GCF3_CUCME	1.2e-08	65.96	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030932.2.1	MELO3C030932.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030932.2	Silver-seed gourd	carmedB0211
MELO3C030932.2	Silver-seed gourd	carmedB0460
MELO3C030932.2	Silver-seed gourd	carmedB0822
MELO3C030932.2	Cucumber (Chinese Long) v3	cucmedB198
MELO3C030932.2	Watermelon (97103) v2	medwmbB305
MELO3C030932.2	Wax gourd	medwgoB375
MELO3C030932.2	Cucumber (Gy14) v2	cgybmedB173
MELO3C030932.2	Cucumber (Gy14) v1	cgymedB311
MELO3C030932.2	Cucumber (Gy14) v1	cgymedB312
MELO3C030932.2	Cucurbita maxima (Rimu)	cmamedB257
MELO3C030932.2	Cucurbita maxima (Rimu)	cmamedB489
MELO3C030932.2	Cucurbita moschata (Rifu)	cmomedB239
MELO3C030932.2	Cucurbita moschata (Rifu)	cmomedB374
MELO3C030932.2	Cucurbita moschata (Rifu)	cmomedB473
MELO3C030932.2	Cucurbita moschata (Rifu)	cmomedB476
MELO3C030932.2	Cucurbita pepo (Zucchini)	cpemedB615
MELO3C030932.2	Cucurbita pepo (Zucchini)	cpemedB673
MELO3C030932.2	Wild cucumber (PI 183967)	cpimedB193
MELO3C030932.2	Cucumber (Chinese Long) v2	cumedB193
MELO3C030932.2	Bottle gourd (USVL1VR-Ls)	lsimedB273
MELO3C030932.2	Watermelon (Charleston Gray)	medwcgB309
MELO3C030932.2	Watermelon (97103) v1	medwmB344