MELO3C030676.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030676.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionU6 snRNA-associated Sm-like protein LSm7
Locationchr04 : 25442041 .. 25442999 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCATTGAAAGTAAGCTTCAATTCACTCTCCTTCTTCGCACAAATTTCGGTTTTCTGCACTCTTCTTATACTCAATGTAGCTTCCAGTTCTTCAATATTTGATTTCCAGATGCATATAATGCATTAACTTCCCCGAGTTTATTTTAATCGATCAGCAGTTGGAATTTACTTTTTCGCTCGTAACGGTTTGTCTCATTTCTCGGATATTTCAGGTTCCTGGGGCgTTTAATTTTACGGAGGAGCTGAGAAATTGATTGCGCGATGGTAAATTTCTTAACGATTTCTTCAATTAGAACATTGATTATGGCAGACTGATTACGAAGTATAATGTGGTATTCGTATCTTTTGTTTTATCAGTCTGGAAGAAAAGAAATTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGTAGACAAGGTTATTTCTACTGATTATGCTTATAGTATTACTGGACAATTGTTTGCGCTTTGTTACTTCCCGATTAGTAAGCTTTTTATCCAAGTAATTGTCTGTTGCTGTTGAGAGGATCGAGGCGTATAATCTAATGTTCCATGTTGATTTTATTTTTCTATTTTTCTTTATGGAGCTTTCTTTATGTTTTTAAATGCGAGAAAATTGCTCTGTGAACCTTATTTTTCCATGTACAGTTACTGAAACGCCCTAAGGATATTATCAATTGCTAAACCTTGTGCCGGATGAAGCTATAGAGTTTTTAAGAGGTAACCAATTAACTGGATTCTGGCAGAATATATGAGATTTGTGGAATTTTGTGGGCCTTTAGACTGAAAGCTCACTGAGTATCAAACCTTTGTATAACATCTATCATATTGCTTTTCTCATCTATCATCACTTTGCTTTATCTGACTGCTTTTTTAAATTTACGAGAAACAATTAGA

mRNA sequence

ACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCATCACTTCCATTGAAAGTTCCTGGGGCgTTTAATTTTACGGAGGAGCTGAGAAATTGATTGCGCGATGTCTGGAAGAAAAGAAATTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGTAGACAAGTTACTGAAACGCCCTAAGGATATTATCAATTGCTAAACCTTGTGCCGGATGAAGCTATAGAGTTTTTAAGAGGTAACCAATTAACTGGATTCTGGCAGAATATATGAGATTTGTGGAATTTTGTGGGCCTTTAGACTGAAAGCTCACTGAGTATCAAACCTTTGTATAACATCTATCATATTGCTTTTCTCATCTATCATCACTTTGCTTTATCTGACTGCTTTTTTAAATTTACGAGAAACAATTAGA

Coding sequence (CDS)

ATGTCTGGAAGAAAAGAAATTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACTGGCGGTAGACAAGTTACTGAAACGCCCTAA

Protein sequence

MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTETP
Homology
[Close]
BLAST of MELO3C030676.2 vs. NCBI nr
Match: XP_002299952.1 (sm-like protein LSM7 [Populus trichocarpa] >XP_002313290.1 sm-like protein LSM7 [Populus trichocarpa] >XP_011007336.1 PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Populus euphratica] >XP_017234905.1 PREDICTED: sm-like protein LSM7 [Daucus carota subsp. sativus] >XP_024458951.1 sm-like protein LSM7 [Populus trichocarpa] >ABK93714.1 unknown [Populus trichocarpa] >KZN05462.1 hypothetical protein DCAR_006299 [Daucus carota subsp. sativus] >PNT19940.1 hypothetical protein POPTR_009G064000v3 [Populus trichocarpa] >PNT56872.1 hypothetical protein POPTR_001G269500v3 [Populus trichocarpa] >PNT56874.1 hypothetical protein POPTR_001G269500v3 [Populus trichocarpa])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. NCBI nr
Match: NP_001235908.1 (uncharacterized protein LOC100306498 [Glycine max] >ACU14702.1 unknown [Glycine max] >KHN12373.1 U6 snRNA-associated Sm-like protein LSm7 [Glycine soja] >KRH42700.1 hypothetical protein GLYMA_08G105900 [Glycine max])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. NCBI nr
Match: XP_020882140.1 (sm-like protein LSM7 [Arabidopsis lyrata subsp. lyrata] >EFH51493.1 hypothetical protein ARALYDRAFT_484298 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. NCBI nr
Match: XP_004149601.1 (PREDICTED: sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 PREDICTED: sm-like protein LSM7 [Cucumis sativus] >XP_011651787.1 PREDICTED: sm-like protein LSM7 [Cucumis sativus] >KGN58602.1 hypothetical protein Csa_3G697950 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. NCBI nr
Match: ONI20339.1 (hypothetical protein PRUPE_2G010100 [Prunus persica])

HSP 1 Score: 60.8 bits (146), Expect = 9.7e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. TAIR10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-10
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. Swiss-Prot
Match: sp|Q9SI54|LSM7_ARATH (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.2e-09
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. TrEMBL
Match: tr|A0A0E0QF28|A0A0E0QF28_ORYRU (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. TrEMBL
Match: tr|Q6ZBS1|Q6ZBS1_ORYSJ (Os08g0177700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0177700 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. TrEMBL
Match: tr|A9PBG1|A9PBG1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G269500v3 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. TrEMBL
Match: tr|C6SZM9|C6SZM9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100306498 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

[Close]
BLAST of MELO3C030676.2 vs. TrEMBL
Match: tr|A0A0E0LRV2|A0A0E0LRV2_ORYPU (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.4e-07
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 1  MSGRKEIVLDLAKFVDKGVQVKLTGGRQVTET 33
          MSGRKE VLDLAKFVDKGVQVKLTGGRQVT T
Sbjct: 1  MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGT 32

The following BLAST results are available for this feature:
BLAST of MELO3C030676.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_002299952.19.7e-0793.75sm-like protein LSM7 [Populus trichocarpa] >XP_002313290.1 sm-like protein LSM7 ... [more]
NP_001235908.19.7e-0793.75uncharacterized protein LOC100306498 [Glycine max] >ACU14702.1 unknown [Glycine ... [more]
XP_020882140.19.7e-0793.75sm-like protein LSM7 [Arabidopsis lyrata subsp. lyrata] >EFH51493.1 hypothetical... [more]
XP_004149601.19.7e-0793.75PREDICTED: sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 PREDICTED: sm-... [more]
ONI20339.19.7e-0793.75hypothetical protein PRUPE_2G010100 [Prunus persica][more]
BLAST of MELO3C030676.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G03870.21.8e-1093.75Small nuclear ribonucleoprotein family protein[more]
BLAST of MELO3C030676.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SI54|LSM7_ARATH3.2e-0993.75Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1[more]
BLAST of MELO3C030676.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0E0QF28|A0A0E0QF28_ORYRU6.4e-0793.75Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1[more]
tr|Q6ZBS1|Q6ZBS1_ORYSJ6.4e-0793.75Os08g0177700 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0177700 PE... [more]
tr|A9PBG1|A9PBG1_POPTR6.4e-0793.75Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G269500v3 PE=... [more]
tr|C6SZM9|C6SZM9_SOYBN6.4e-0793.75Uncharacterized protein OS=Glycine max OX=3847 GN=100306498 PE=2 SV=1[more]
tr|A0A0E0LRV2|A0A0E0LRV2_ORYPU6.4e-0793.75Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030676.2.1MELO3C030676.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..32
e-value: 4.3E-5
score: 25.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030676.2Watermelon (97103) v2medwmbB305
MELO3C030676.2Wax gourdmedwgoB375
MELO3C030676.2Cucumber (Gy14) v2cgybmedB173
MELO3C030676.2Cucumber (Gy14) v1cgymedB312
MELO3C030676.2Cucurbita maxima (Rimu)cmamedB257
MELO3C030676.2Cucurbita moschata (Rifu)cmomedB239
MELO3C030676.2Cucurbita moschata (Rifu)cmomedB850
MELO3C030676.2Cucurbita pepo (Zucchini)cpemedB010
MELO3C030676.2Cucurbita pepo (Zucchini)cpemedB673
MELO3C030676.2Wild cucumber (PI 183967)cpimedB193
MELO3C030676.2Cucumber (Chinese Long) v2cumedB193
MELO3C030676.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C030676.2Watermelon (Charleston Gray)medwcgB309
MELO3C030676.2Watermelon (97103) v1medwmB344
MELO3C030676.2Silver-seed gourdcarmedB0289
MELO3C030676.2Silver-seed gourdcarmedB0822
MELO3C030676.2Cucumber (Chinese Long) v3cucmedB198