MELO3C030662.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030662.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprotein ROOT HAIR DEFECTIVE 3
Locationchr04 : 23790470 .. 23790915 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACTTTCTAGGTCGCAAAAAACTAAAGGTATATGGTTGGCTAGATGCGCCGACATCGAGCCTTGTACACTTATGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGTGCATTTCTATTCCCTTTTTGGTTTTCATGTGTTTCTTTTGTTTGTACTTTCGTTTATTTTTGCCTTTTTTTTAATTTTTTATTTTTCCACAAATGTGTTTGTCAATGTTTTGAATTCAGTATATCATTGCATGCTTCTTTTTGCAAATACACATATGTGTATATATGTCTGTTTATGTATGTATTTATGCAAACATACTTATTTTTTTGTATCATATCAAGCTAAGATGTATACTTTTGTTGTTTCTTAATTTGCTTTTGTCACATTCTTTTTAAGGACGACACTGCATTTAAGAAGCAAAGTGCCCTCTTTGCACTTGCCGTGTAA

mRNA sequence

ATGTCACTTTCTAGGTCGCAAAAAACTAAAGGTATATGGTTGGCTAGATGCGCCGACATCGAGCCTTGTACACTTATGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGACGACACTGCATTTAAGAAGCAAAGTGCCCTCTTTGCACTTGCCGTGTAA

Coding sequence (CDS)

ATGTCACTTTCTAGGTCGCAAAAAACTAAAGGTATATGGTTGGCTAGATGCGCCGACATCGAGCCTTGTACACTTATGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGACGACACTGCATTTAAGAAGCAAAGTGCCCTCTTTGCACTTGCCGTGTAA

Protein sequence

MSLSRSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV
Homology
[Close]
BLAST of MELO3C030662.2 vs. NCBI nr
Match: CBI35950.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 290 RSQTTKGIWLARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 340

[Close]
BLAST of MELO3C030662.2 vs. NCBI nr
Match: XP_010654523.1 (PREDICTED: protein ROOT HAIR DEFECTIVE 3 [Vitis vinifera])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 74  RSQTTKGIWLARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]
BLAST of MELO3C030662.2 vs. NCBI nr
Match: CAN63206.1 (hypothetical protein VITISV_010618 [Vitis vinifera])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 153 RSQTTKGIWLARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 203

[Close]
BLAST of MELO3C030662.2 vs. NCBI nr
Match: KHN11286.1 (Protein ROOT HAIR DEFECTIVE 3 like 1 [Glycine soja])

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-19
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5  RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
          RSQ TKGIW+ARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 47 RSQTTKGIWMARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 97

[Close]
BLAST of MELO3C030662.2 vs. NCBI nr
Match: XP_003531616.1 (protein ROOT HAIR DEFECTIVE 3 homolog 1 [Glycine max] >KRH44148.1 hypothetical protein GLYMA_08G193200 [Glycine max])

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-19
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+ARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 74  RSQTTKGIWMARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]
BLAST of MELO3C030662.2 vs. TAIR10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 100.5 bits (249), Expect = 3.4e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALA+
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]
BLAST of MELO3C030662.2 vs. TAIR10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 99.0 bits (245), Expect = 9.8e-22
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+ARCA IEPCT++MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]
BLAST of MELO3C030662.2 vs. TAIR10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-19
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+ARC  IEP T+ MDLEGTDGRERGEDDT F+KQSALFA+AV
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAV 124

[Close]
BLAST of MELO3C030662.2 vs. Swiss-Prot
Match: sp|Q9SSN0|RHD31_ARATH (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 6.0e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCA IEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALA+
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]
BLAST of MELO3C030662.2 vs. Swiss-Prot
Match: sp|P93042|RHD3_ARATH (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-20
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+ARCA IEPCT++MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]
BLAST of MELO3C030662.2 vs. Swiss-Prot
Match: sp|Q2QMH2|RHD31_ORYSJ (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.9e-19
Identity = 41/51 (80.39%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+ARC  +EPCT++MDLEGTDGRERGEDDTAF+KQS+LFALA+
Sbjct: 74  RSQTTKGIWIARCVGVEPCTVVMDLEGTDGRERGEDDTAFEKQSSLFALAI 124

[Close]
BLAST of MELO3C030662.2 vs. Swiss-Prot
Match: sp|Q0JLS6|RHD3_ORYSJ (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.7e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+A+  +IEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 71  RSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]
BLAST of MELO3C030662.2 vs. Swiss-Prot
Match: sp|Q9FKE9|RHD32_ARATH (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.3e-18
Identity = 41/51 (80.39%), Postives = 45/51 (88.24%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+ARC  IEP T+ MDLEGTDGRERGEDDT F+KQSALFA+AV
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAV 124

[Close]
BLAST of MELO3C030662.2 vs. TrEMBL
Match: tr|F6HY18|F6HY18_VITVI (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Vitis vinifera OX=29760 GN=VIT_09s0002g02200 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 74  RSQTTKGIWLARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]
BLAST of MELO3C030662.2 vs. TrEMBL
Match: tr|A5B6W0|A5B6W0_VITVI (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Vitis vinifera OX=29760 GN=VITISV_010618 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 153 RSQTTKGIWLARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 203

[Close]
BLAST of MELO3C030662.2 vs. TrEMBL
Match: tr|I1KUU5|I1KUU5_SOYBN (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Glycine max OX=3847 GN=100780006 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIW+ARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 74  RSQTTKGIWMARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]
BLAST of MELO3C030662.2 vs. TrEMBL
Match: tr|W9S4A8|W9S4A8_9ROSA (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Morus notabilis OX=981085 GN=L484_005098 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLA+CADIEPCTL+MDLEGTDGRERGEDDTAF+KQSALFALAV
Sbjct: 130 RSQTTKGIWLAKCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 180

[Close]
BLAST of MELO3C030662.2 vs. TrEMBL
Match: tr|A0A1U8AA95|A0A1U8AA95_NELNU (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Nelumbo nucifera OX=4432 GN=LOC104600718 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0 

Query: 5   RSQKTKGIWLARCADIEPCTLMMDLEGTDGRERGEDDTAFKKQSALFALAV 56
           RSQ TKGIWLARCADIEPCTL+MDLEGTDGRERGEDDTAF+KQS+LFALAV
Sbjct: 74  RSQTTKGIWLARCADIEPCTLVMDLEGTDGRERGEDDTAFEKQSSLFALAV 124

The following BLAST results are available for this feature:
BLAST of MELO3C030662.2 vs. NCBI nr
Match NameE-valueIdentityDescription
CBI35950.32.2e-1994.12unnamed protein product, partial [Vitis vinifera][more]
XP_010654523.12.2e-1994.12PREDICTED: protein ROOT HAIR DEFECTIVE 3 [Vitis vinifera][more]
CAN63206.12.2e-1994.12hypothetical protein VITISV_010618 [Vitis vinifera][more]
KHN11286.13.7e-1992.16Protein ROOT HAIR DEFECTIVE 3 like 1 [Glycine soja][more]
XP_003531616.13.7e-1992.16protein ROOT HAIR DEFECTIVE 3 homolog 1 [Glycine max] >KRH44148.1 hypothetical p... [more]
BLAST of MELO3C030662.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G72960.13.4e-2290.20Root hair defective 3 GTP-binding protein (RHD3)[more]
AT3G13870.19.8e-2288.24Root hair defective 3 GTP-binding protein (RHD3)[more]
AT5G45160.13.5e-1980.39Root hair defective 3 GTP-binding protein (RHD3)[more]
BLAST of MELO3C030662.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SSN0|RHD31_ARATH6.0e-2190.20Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7... [more]
sp|P93042|RHD3_ARATH1.8e-2088.24Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1[more]
sp|Q2QMH2|RHD31_ORYSJ1.9e-1980.39Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947... [more]
sp|Q0JLS6|RHD3_ORYSJ5.7e-1984.31Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P... [more]
sp|Q9FKE9|RHD32_ARATH6.3e-1880.39Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4... [more]
BLAST of MELO3C030662.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|F6HY18|F6HY18_VITVI1.4e-1994.12Protein ROOT HAIR DEFECTIVE 3 homolog OS=Vitis vinifera OX=29760 GN=VIT_09s0002g... [more]
tr|A5B6W0|A5B6W0_VITVI1.4e-1994.12Protein ROOT HAIR DEFECTIVE 3 homolog OS=Vitis vinifera OX=29760 GN=VITISV_01061... [more]
tr|I1KUU5|I1KUU5_SOYBN2.5e-1992.16Protein ROOT HAIR DEFECTIVE 3 homolog OS=Glycine max OX=3847 GN=100780006 PE=3 S... [more]
tr|W9S4A8|W9S4A8_9ROSA3.2e-1992.16Protein ROOT HAIR DEFECTIVE 3 homolog OS=Morus notabilis OX=981085 GN=L484_00509... [more]
tr|A0A1U8AA95|A0A1U8AA95_NELNU3.2e-1992.16Protein ROOT HAIR DEFECTIVE 3 homolog OS=Nelumbo nucifera OX=4432 GN=LOC10460071... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR030386G_GB1_RHD3_dom
IPR008803RHD3/Sey1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030662.2.1MELO3C030662.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:3.40.50.300coord: 1..55
e-value: 2.4E-5
score: 25.6
NoneNo IPR availablePANTHERPTHR11649:SF62PROTEIN ROOT HAIR DEFECTIVE 3coord: 4..55
NoneNo IPR availablePANTHERPTHR11649MSS1/TRME-RELATED GTP-BINDING PROTEINcoord: 4..55
IPR008803RHD3/Sey1PFAMPF05879RHD3coord: 4..55
e-value: 9.2E-26
score: 90.1
IPR030386GB1/RHD3-type guanine nucleotide-binding (G) domainPROSITEPS51715G_GB1_RHD3coord: 1..55
score: 21.37

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030662.2Watermelon (97103) v2medwmbB305
MELO3C030662.2Watermelon (97103) v2medwmbB357
MELO3C030662.2Wax gourdmedwgoB375
MELO3C030662.2Wax gourdmedwgoB443
MELO3C030662.2Cucumber (Gy14) v2cgybmedB173
MELO3C030662.2Cucumber (Gy14) v2cgybmedB485
MELO3C030662.2Cucumber (Gy14) v1cgymedB203
MELO3C030662.2Cucumber (Gy14) v1cgymedB415
MELO3C030662.2Cucurbita maxima (Rimu)cmamedB257
MELO3C030662.2Cucurbita maxima (Rimu)cmamedB387
MELO3C030662.2Cucurbita maxima (Rimu)cmamedB489
MELO3C030662.2Cucurbita maxima (Rimu)cmamedB943
MELO3C030662.2Cucurbita moschata (Rifu)cmomedB239
MELO3C030662.2Cucurbita moschata (Rifu)cmomedB374
MELO3C030662.2Cucurbita moschata (Rifu)cmomedB476
MELO3C030662.2Cucurbita moschata (Rifu)cmomedB932
MELO3C030662.2Cucurbita pepo (Zucchini)cpemedB160
MELO3C030662.2Cucurbita pepo (Zucchini)cpemedB360
MELO3C030662.2Cucurbita pepo (Zucchini)cpemedB615
MELO3C030662.2Cucurbita pepo (Zucchini)cpemedB673
MELO3C030662.2Wild cucumber (PI 183967)cpimedB193
MELO3C030662.2Wild cucumber (PI 183967)cpimedB544
MELO3C030662.2Cucumber (Chinese Long) v2cumedB193
MELO3C030662.2Cucumber (Chinese Long) v2cumedB528
MELO3C030662.2Melon (DHL92) v3.6.1medmedB084
MELO3C030662.2Bottle gourd (USVL1VR-Ls)lsimedB221
MELO3C030662.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C030662.2Watermelon (Charleston Gray)medwcgB308
MELO3C030662.2Watermelon (Charleston Gray)medwcgB309
MELO3C030662.2Watermelon (97103) v1medwmB343
MELO3C030662.2Watermelon (97103) v1medwmB344
MELO3C030662.2Silver-seed gourdcarmedB0460
MELO3C030662.2Silver-seed gourdcarmedB0770
MELO3C030662.2Silver-seed gourdcarmedB0822
MELO3C030662.2Cucumber (Chinese Long) v3cucmedB198
MELO3C030662.2Cucumber (Chinese Long) v3cucmedB556