MELO3C030661.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030661.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein TIC 214
Locationchr04 : 23731292 .. 23731561 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGATGCATTAGGATCCCGATTCATGGATCTCTTGGTTCGAGAAATCAAAATAAATCAAATTTCAAAGTTTATTGAGTTTTAAAACAATAA

mRNA sequence

GGACTCTATTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGATGCATTAGGATCCCGATTCATGGATCTCTTGGTTCGAGAAATCAAAATAAATCAAATTTCAAAGTTTATTGAGTTTTAAAACAATAA

Coding sequence (CDS)

ATGGAAGAAGGAACCGAGAAGAAAGTATCAGCAACAACAGGTTTTATTACGGGACAGCTCATGATGTTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGATGCATTAGGATCCCGATTCATGGATCTCTTGGTTCGAGAAATCAAAATAAATCAAATTTCAAAGTTTATTGA

Protein sequence

MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPIHGSLGSRNQNKSNFKVY
Homology
[Close]
BLAST of MELO3C030661.2 vs. NCBI nr
Match: YP_247646.1 (hypothetical protein CsCp100 [Cucumis sativus] >CAJ00805.1 hypothetical protein CsCp100 (chloroplast) [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 51 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 93

[Close]
BLAST of MELO3C030661.2 vs. NCBI nr
Match: YP_247658.1 (hypothetical protein CsCp113 [Cucumis sativus] >CAJ00817.1 hypothetical protein CsCp113 (chloroplast) [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. NCBI nr
Match: AAZ94706.1 (hypothetical protein (chloroplast) [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. NCBI nr
Match: Q4VZL0.2 (RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope membrane of chloroplasts 214; Short=AtTIC214 >ABI97471.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ABI98801.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16135.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16218.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16301.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus] >ARQ16384.1 hypothetical chloroplast RF1 (chloroplast) [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. NCBI nr
Match: YP_009346534.1 (hypothetical protein (chloroplast) [Cucumis x hytivus] >AOW71145.1 hypothetical protein (chloroplast) [Cucumis x hytivus])

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. TAIR10
Match: AT2G07739.1 (Ycf1 protein)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 2  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGR
Sbjct: 54 EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGR 89

[Close]
BLAST of MELO3C030661.2 vs. TAIR10
Match: ATCG01130.1 (Ycf1 protein)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 2  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGR
Sbjct: 55 EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGR 90

[Close]
BLAST of MELO3C030661.2 vs. TAIR10
Match: ATCG01000.1 (Ycf1 protein)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 2  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGR
Sbjct: 55 EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGR 90

[Close]
BLAST of MELO3C030661.2 vs. TAIR10
Match: ATMG00370.1 (Ycf1 protein)

HSP 1 Score: 72.8 bits (177), Expect = 8.2e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0 

Query: 2  EEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          EEGTEKKVSATTGFI GQLMMFISIYYAPLHLALGR
Sbjct: 54 EEGTEKKVSATTGFIAGQLMMFISIYYAPLHLALGR 89

[Close]
BLAST of MELO3C030661.2 vs. Swiss-Prot
Match: sp|Q4VZL0|TI214_CUCSA (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 7.8e-14
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. Swiss-Prot
Match: sp|A6MM95|TI214_BUXMI (Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]
BLAST of MELO3C030661.2 vs. Swiss-Prot
Match: sp|A0A393|TI214_COFAR (Protein TIC 214 OS=Coffea arabica OX=13443 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]
BLAST of MELO3C030661.2 vs. Swiss-Prot
Match: sp|Q3C1P6|TI214_NICSY (Protein TIC 214 OS=Nicotiana sylvestris OX=4096 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]
BLAST of MELO3C030661.2 vs. Swiss-Prot
Match: sp|Q33BW4|TI214_NICTO (Protein TIC 214 OS=Nicotiana tomentosiformis OX=4098 GN=TIC214 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.0e-13
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 86

[Close]
BLAST of MELO3C030661.2 vs. TrEMBL
Match: tr|A0A218KG90|A0A218KG90_CUCSA (Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. TrEMBL
Match: tr|A0A1X9Q205|A0A1X9Q205_CUCSA (Protein TIC 214 OS=Cucumis sativus OX=3659 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. TrEMBL
Match: tr|A0A286SB96|A0A286SB96_CUCSA (Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. TrEMBL
Match: tr|A0A1P8C7U3|A0A1P8C7U3_9ROSI (Protein TIC 214 OS=Cucumis x hytivus OX=442738 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRCIRIPI 44
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR   I +
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPYTITV 92

[Close]
BLAST of MELO3C030661.2 vs. TrEMBL
Match: tr|A0A1D0CFN3|A0A1D0CFN3_9FABA (Protein TIC 214 OS=Acacia woodmaniorum OX=672358 GN=ycf1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0 

Query: 1  MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 38
          MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR
Sbjct: 50 MEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGR 86

The following BLAST results are available for this feature:
BLAST of MELO3C030661.2 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_247646.12.4e-1188.37hypothetical protein CsCp100 [Cucumis sativus] >CAJ00805.1 hypothetical protein ... [more]
YP_247658.12.4e-1188.37hypothetical protein CsCp113 [Cucumis sativus] >CAJ00817.1 hypothetical protein ... [more]
AAZ94706.12.4e-1188.37hypothetical protein (chloroplast) [Cucumis sativus][more]
Q4VZL0.22.4e-1188.37RecName: Full=Protein TIC 214; AltName: Full=Translocon at the inner envelope me... [more]
YP_009346534.12.4e-1188.37hypothetical protein (chloroplast) [Cucumis x hytivus] >AOW71145.1 hypothetical ... [more]
BLAST of MELO3C030661.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07739.18.2e-1497.22Ycf1 protein[more]
ATCG01130.18.2e-1497.22Ycf1 protein[more]
ATCG01000.18.2e-1497.22Ycf1 protein[more]
ATMG00370.18.2e-1497.22Ycf1 protein[more]
BLAST of MELO3C030661.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q4VZL0|TI214_CUCSA7.8e-1488.37Protein TIC 214 OS=Cucumis sativus OX=3659 GN=TIC214 PE=3 SV=2[more]
sp|A6MM95|TI214_BUXMI1.0e-13100.00Protein TIC 214 OS=Buxus microphylla OX=153571 GN=TIC214 PE=3 SV=1[more]
sp|A0A393|TI214_COFAR1.0e-13100.00Protein TIC 214 OS=Coffea arabica OX=13443 GN=TIC214 PE=3 SV=1[more]
sp|Q3C1P6|TI214_NICSY1.0e-13100.00Protein TIC 214 OS=Nicotiana sylvestris OX=4096 GN=TIC214 PE=3 SV=1[more]
sp|Q33BW4|TI214_NICTO1.0e-13100.00Protein TIC 214 OS=Nicotiana tomentosiformis OX=4098 GN=TIC214 PE=3 SV=1[more]
BLAST of MELO3C030661.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A218KG90|A0A218KG90_CUCSA1.6e-1188.37Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1[more]
tr|A0A1X9Q205|A0A1X9Q205_CUCSA1.6e-1188.37Protein TIC 214 OS=Cucumis sativus OX=3659 GN=ycf1 PE=3 SV=1[more]
tr|A0A286SB96|A0A286SB96_CUCSA1.6e-1188.37Protein TIC 214 OS=Cucumis sativus var. hardwickii OX=319220 GN=ycf1 PE=3 SV=1[more]
tr|A0A1P8C7U3|A0A1P8C7U3_9ROSI1.6e-1188.37Protein TIC 214 OS=Cucumis x hytivus OX=442738 GN=ycf1 PE=3 SV=1[more]
tr|A0A1D0CFN3|A0A1D0CFN3_9FABA2.1e-11100.00Protein TIC 214 OS=Acacia woodmaniorum OX=672358 GN=ycf1 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR008896TIC214
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009536 plastid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030661.2.1MELO3C030661.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008896Protein TIC214PFAMPF05758Ycf1coord: 2..41
e-value: 1.8E-21
score: 75.7
NoneNo IPR availablePANTHERPTHR33163:SF13PROTEIN TIC 214coord: 2..41
NoneNo IPR availablePANTHERPTHR33163FAMILY NOT NAMEDcoord: 2..41

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030661.2Cucurbita moschata (Rifu)cmomedB374
MELO3C030661.2Cucurbita moschata (Rifu)cmomedB476
MELO3C030661.2Cucurbita moschata (Rifu)cmomedB932
MELO3C030661.2Cucurbita pepo (Zucchini)cpemedB160
MELO3C030661.2Cucurbita pepo (Zucchini)cpemedB360
MELO3C030661.2Cucurbita pepo (Zucchini)cpemedB615
MELO3C030661.2Cucurbita pepo (Zucchini)cpemedB673
MELO3C030661.2Wild cucumber (PI 183967)cpimedB193
MELO3C030661.2Wild cucumber (PI 183967)cpimedB544
MELO3C030661.2Cucumber (Chinese Long) v2cumedB193
MELO3C030661.2Cucumber (Chinese Long) v2cumedB528
MELO3C030661.2Melon (DHL92) v3.6.1medmedB084
MELO3C030661.2Bottle gourd (USVL1VR-Ls)lsimedB221
MELO3C030661.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C030661.2Watermelon (Charleston Gray)medwcgB308
MELO3C030661.2Watermelon (Charleston Gray)medwcgB309
MELO3C030661.2Watermelon (97103) v1medwmB343
MELO3C030661.2Watermelon (97103) v1medwmB344
MELO3C030661.2Silver-seed gourdcarmedB0460
MELO3C030661.2Silver-seed gourdcarmedB0770
MELO3C030661.2Silver-seed gourdcarmedB0822
MELO3C030661.2Cucumber (Chinese Long) v3cucmedB198
MELO3C030661.2Cucumber (Chinese Long) v3cucmedB556
MELO3C030661.2Watermelon (97103) v2medwmbB305
MELO3C030661.2Watermelon (97103) v2medwmbB357
MELO3C030661.2Wax gourdmedwgoB375
MELO3C030661.2Wax gourdmedwgoB443
MELO3C030661.2Cucumber (Gy14) v2cgybmedB173
MELO3C030661.2Cucumber (Gy14) v2cgybmedB485
MELO3C030661.2Cucumber (Gy14) v1cgymedB203
MELO3C030661.2Cucumber (Gy14) v1cgymedB415
MELO3C030661.2Cucurbita maxima (Rimu)cmamedB257
MELO3C030661.2Cucurbita maxima (Rimu)cmamedB387
MELO3C030661.2Cucurbita maxima (Rimu)cmamedB489
MELO3C030661.2Cucurbita maxima (Rimu)cmamedB943
MELO3C030661.2Cucurbita moschata (Rifu)cmomedB239