MELO3C030656.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C030656.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPseudouridine-5'-phosphate glycosidase
Locationchr04 : 23503641 .. 23503920 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATATCTTTTGATCTCACCGAGCTAGGAAGAACCCCTGTAGCTGTCATCTCAGCTGGTGTAAAATTGATATTAGACATCTCCAGGACCTTTGAATATTTGGAACAGTCCTCTATTTTCCTGCAATAAACCTTTTTACACATCATGCAGCTTTCTTTTTTATTTATTCACTGGCCCAAAAATGTTATTAACACAGGAAACTCAAGGAGTATGTGTTGCAGCTTATAGAACGACAAACGAATTTTCTGCTTTTTTCATAGAAACCAGTGGCTGCAAG

mRNA sequence

ATGGATATATCTTTTGATCTCACCGAGCTAGGAAGAACCCCTGTAGCTGTCATCTCAGCTGGTGTAAAATTGATATTAGACATCTCCAGGACCTTTGAATATTTGGAAACTCAAGGAGTATGTGTTGCAGCTTATAGAACGACAAACGAATTTTCTGCTTTTTTCATAGAAACCAGTGGCTGCAAG

Coding sequence (CDS)

ATGGATATATCTTTTGATCTCACCGAGCTAGGAAGAACCCCTGTAGCTGTCATCTCAGCTGGTGTAAAATTGATATTAGACATCTCCAGGACCTTTGAATATTTGGAAACTCAAGGAGTATGTGTTGCAGCTTATAGAACGACAAACGAATTTTCTGCTTTTTTCATAGAAACCAGTGGCTGCAAG

Protein sequence

MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSGCK
BLAST of MELO3C030656.2 vs. NCBI nr
Match: XP_004139051.1 (PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sativus] >XP_011660154.1 PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sativus] >KGN66518.1 hypothetical protein Csa_1G616850 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAGVK ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 174 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 233

Query: 61  CK 63
           CK
Sbjct: 234 CK 234

BLAST of MELO3C030656.2 vs. NCBI nr
Match: XP_009356077.1 (PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri] >XP_009356079.1 PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri] >XP_009356080.1 PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri])

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAGVK ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 227

Query: 61  CK 63
           CK
Sbjct: 228 CK 228

BLAST of MELO3C030656.2 vs. NCBI nr
Match: XP_009338535.1 (PREDICTED: uncharacterized protein LOC103930867 [Pyrus x bretschneideri] >XP_009338536.1 PREDICTED: uncharacterized protein LOC103930867 [Pyrus x bretschneideri] >XP_009338538.1 PREDICTED: uncharacterized protein LOC103930867 [Pyrus x bretschneideri])

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAGVK ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 168 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 227

Query: 61  CK 63
           CK
Sbjct: 228 CK 228

BLAST of MELO3C030656.2 vs. NCBI nr
Match: XP_022960638.1 (uncharacterized protein LOC111461367 [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 8.5e-20
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAGVK ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 178 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 237

Query: 61  CK 63
           CK
Sbjct: 238 CK 238

BLAST of MELO3C030656.2 vs. NCBI nr
Match: XP_008450374.1 (PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X1 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAG+K ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 175 MDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 234

Query: 61  CK 63
           CK
Sbjct: 235 CK 235

BLAST of MELO3C030656.2 vs. TAIR10
Match: AT1G50510.1 (indigoidine synthase A family protein)

HSP 1 Score: 87.0 bits (214), Expect = 4.3e-18
Identity = 46/62 (74.19%), Postives = 51/62 (82.26%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLT LGRTP+AVISAGVK ILDI +T EYLETQ V VAAY+ ++EF AFF E SG
Sbjct: 163 MDISSDLTALGRTPIAVISAGVKSILDIPKTLEYLETQEVYVAAYK-SDEFPAFFTEKSG 222

Query: 61  CK 63
           CK
Sbjct: 223 CK 223

BLAST of MELO3C030656.2 vs. Swiss-Prot
Match: sp|C0ZIY1|PSUG_BREBN (Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) OX=358681 GN=psuG PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-12
Identity = 38/59 (64.41%), Postives = 43/59 (72.88%), Query Frame = 0

Query: 2   DISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 61
           D+S DLTEL +T VAV+ AG K ILDI RT EYLETQGV V  YR T+EF +FF   SG
Sbjct: 138 DVSADLTELAQTDVAVVCAGAKSILDIGRTLEYLETQGVPVVGYR-TDEFPSFFARKSG 195

BLAST of MELO3C030656.2 vs. Swiss-Prot
Match: sp|Q1M4T3|PSUG2_RHIL3 (Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (strain 3841) OX=216596 GN=psuG2 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.4e-12
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 0

Query: 2   DISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSGC 61
           DIS DLTELGRT  AV+ AGVK ILDI++T EYLETQ V V AY  T +F AFF   SG 
Sbjct: 139 DISADLTELGRTKTAVVCAGVKSILDIAKTLEYLETQRVPVIAY-GTEDFPAFFTRRSGF 198

Query: 62  K 63
           K
Sbjct: 199 K 198

BLAST of MELO3C030656.2 vs. Swiss-Prot
Match: sp|B9LGZ1|PSUG_CHLSY (Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) OX=480224 GN=psuG PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.4e-12
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 0

Query: 2   DISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 61
           D+S DLTELGRTPV V+ AG K ILD+  T EYLETQGV V  Y+T  EF AF+   SG
Sbjct: 136 DVSADLTELGRTPVLVVCAGAKAILDLPATLEYLETQGVPVVGYQTV-EFPAFYTPHSG 193

BLAST of MELO3C030656.2 vs. Swiss-Prot
Match: sp|B8II14|PSUG_METNO (Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060) OX=460265 GN=psuG PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 7.6e-12
Identity = 37/60 (61.67%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           +DIS DL EL RTPVAV+ AG K ILD+ RT EYLET+GV V  YR T+ F AF+   SG
Sbjct: 138 LDISADLDELARTPVAVVCAGAKAILDLPRTLEYLETRGVPVVGYR-TDRFPAFWSRDSG 196

BLAST of MELO3C030656.2 vs. Swiss-Prot
Match: sp|Q8NYD0|PSUG_STAAW (Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) OX=196620 GN=psuG PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.4e-11
Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DL EL +T V VI AG K ILD+ +T EYLET+GV V  Y+ TNE  AFF   SG
Sbjct: 140 MDISADLEELSKTNVTVICAGAKSILDLPKTMEYLETKGVPVIGYQ-TNELPAFFTRESG 199

Query: 61  CK 63
            K
Sbjct: 200 VK 200

BLAST of MELO3C030656.2 vs. TrEMBL
Match: tr|A0A0A0LXQ4|A0A0A0LXQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-20
Identity = 55/62 (88.71%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAGVK ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 174 MDISSDLTELGRTPVAVISAGVKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 233

Query: 61  CK 63
           CK
Sbjct: 234 CK 234

BLAST of MELO3C030656.2 vs. TrEMBL
Match: tr|A0A1S3BQ44|A0A1S3BQ44_CUCME (pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.3e-20
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAG+K ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 175 MDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 234

Query: 61  CK 63
           CK
Sbjct: 235 CK 235

BLAST of MELO3C030656.2 vs. TrEMBL
Match: tr|A0A1S3BNH4|A0A1S3BNH4_CUCME (pseudouridine-5'-phosphate glycosidase isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.3e-20
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAG+K ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 175 MDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 234

Query: 61  CK 63
           CK
Sbjct: 235 CK 235

BLAST of MELO3C030656.2 vs. TrEMBL
Match: tr|A0A1S3BP55|A0A1S3BP55_CUCME (pseudouridine-5'-phosphate glycosidase isoform X3 OS=Cucumis melo OX=3656 GN=LOC103492003 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.3e-20
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAG+K ILDI RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 175 MDISSDLTELGRTPVAVISAGIKSILDIPRTLEYLETQGVCVAAYR-TNEFPAFFTETSG 234

Query: 61  CK 63
           CK
Sbjct: 235 CK 235

BLAST of MELO3C030656.2 vs. TrEMBL
Match: tr|M5X1Q1|M5X1Q1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009681mg PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.5e-20
Identity = 54/62 (87.10%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MDISFDLTELGRTPVAVISAGVKLILDISRTFEYLETQGVCVAAYRTTNEFSAFFIETSG 60
           MDIS DLTELGRTPVAVISAGVK ILD+ RT EYLETQGVCVAAYR TNEF AFF ETSG
Sbjct: 106 MDISSDLTELGRTPVAVISAGVKSILDVPRTLEYLETQGVCVAAYR-TNEFPAFFSETSG 165

Query: 61  CK 63
           CK
Sbjct: 166 CK 166

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004139051.18.5e-2088.71PREDICTED: pseudouridine-metabolizing bifunctional protein C1861.05 [Cucumis sat... [more]
XP_009356077.18.5e-2088.71PREDICTED: uncharacterized protein LOC103946974 [Pyrus x bretschneideri] >XP_009... [more]
XP_009338535.18.5e-2088.71PREDICTED: uncharacterized protein LOC103930867 [Pyrus x bretschneideri] >XP_009... [more]
XP_022960638.18.5e-2088.71uncharacterized protein LOC111461367 [Cucurbita moschata][more]
XP_008450374.11.1e-1987.10PREDICTED: pseudouridine-5'-phosphate glycosidase isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT1G50510.14.3e-1874.19indigoidine synthase A family protein[more]
Match NameE-valueIdentityDescription
sp|C0ZIY1|PSUG_BREBN2.6e-1264.41Pseudouridine-5'-phosphate glycosidase OS=Brevibacillus brevis (strain 47 / JCM ... [more]
sp|Q1M4T3|PSUG2_RHIL33.4e-1265.57Pseudouridine-5'-phosphate glycosidase 2 OS=Rhizobium leguminosarum bv. viciae (... [more]
sp|B9LGZ1|PSUG_CHLSY4.4e-1262.71Pseudouridine-5'-phosphate glycosidase OS=Chloroflexus aurantiacus (strain ATCC ... [more]
sp|B8II14|PSUG_METNO7.6e-1261.67Pseudouridine-5'-phosphate glycosidase OS=Methylobacterium nodulans (strain LMG ... [more]
sp|Q8NYD0|PSUG_STAAW6.4e-1159.68Pseudouridine-5'-phosphate glycosidase OS=Staphylococcus aureus (strain MW2) OX=... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LXQ4|A0A0A0LXQ4_CUCSA5.6e-2088.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G616850 PE=3 SV=1[more]
tr|A0A1S3BQ44|A0A1S3BQ44_CUCME7.3e-2087.10pseudouridine-5'-phosphate glycosidase isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3BNH4|A0A1S3BNH4_CUCME7.3e-2087.10pseudouridine-5'-phosphate glycosidase isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3BP55|A0A1S3BP55_CUCME7.3e-2087.10pseudouridine-5'-phosphate glycosidase isoform X3 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|M5X1Q1|M5X1Q1_PRUPE9.5e-2087.10Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa009681mg PE=3 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016798hydrolase activity, acting on glycosyl bonds
Vocabulary: INTERPRO
TermDefinition
IPR022830Indigdn_synthA-like
IPR007342PsuG
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016798 hydrolase activity, acting on glycosyl bonds

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030656.2.1MELO3C030656.2.1mRNA


Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007342Pseudouridine-5'-phosphate glycosidasePFAMPF04227Indigoidine_Acoord: 1..62
e-value: 2.4E-25
score: 89.4
IPR007342Pseudouridine-5'-phosphate glycosidasePANTHERPTHR42909FAMILY NOT NAMEDcoord: 1..62
IPR022830Indigoidine synthase A-likeGENE3DG3DSA:3.40.1790.10coord: 1..62
e-value: 1.7E-26
score: 95.0
IPR022830Indigoidine synthase A-likeSUPERFAMILYSSF110581Indigoidine synthase A-likecoord: 1..62

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030656.2Cucumber (Gy14) v2cgybmedB173
MELO3C030656.2Cucumber (Gy14) v2cgybmedB191
MELO3C030656.2Cucumber (Gy14) v2cgybmedB485
MELO3C030656.2Cucumber (Gy14) v1cgymedB342
MELO3C030656.2Cucumber (Gy14) v1cgymedB343
MELO3C030656.2Cucurbita maxima (Rimu)cmamedB257
MELO3C030656.2Cucurbita maxima (Rimu)cmamedB387
MELO3C030656.2Cucurbita maxima (Rimu)cmamedB489
MELO3C030656.2Cucurbita maxima (Rimu)cmamedB943
MELO3C030656.2Cucurbita moschata (Rifu)cmomedB239
MELO3C030656.2Cucurbita moschata (Rifu)cmomedB476
MELO3C030656.2Cucurbita moschata (Rifu)cmomedB932
MELO3C030656.2Cucurbita pepo (Zucchini)cpemedB360
MELO3C030656.2Cucurbita pepo (Zucchini)cpemedB615
MELO3C030656.2Cucurbita pepo (Zucchini)cpemedB673
MELO3C030656.2Wild cucumber (PI 183967)cpimedB193
MELO3C030656.2Wild cucumber (PI 183967)cpimedB215
MELO3C030656.2Wild cucumber (PI 183967)cpimedB544
MELO3C030656.2Cucumber (Chinese Long) v2cumedB193
MELO3C030656.2Cucumber (Chinese Long) v2cumedB215
MELO3C030656.2Cucumber (Chinese Long) v2cumedB528
MELO3C030656.2Melon (DHL92) v3.6.1medmedB084
MELO3C030656.2Bottle gourd (USVL1VR-Ls)lsimedB221
MELO3C030656.2Bottle gourd (USVL1VR-Ls)lsimedB273
MELO3C030656.2Watermelon (Charleston Gray)medwcgB308
MELO3C030656.2Watermelon (Charleston Gray)medwcgB309
MELO3C030656.2Watermelon (97103) v1medwmB343
MELO3C030656.2Watermelon (97103) v1medwmB344
MELO3C030656.2Silver-seed gourdcarmedB0460
MELO3C030656.2Silver-seed gourdcarmedB0770
MELO3C030656.2Silver-seed gourdcarmedB0822
MELO3C030656.2Cucumber (Chinese Long) v3cucmedB217
MELO3C030656.2Cucumber (Chinese Long) v3cucmedB198
MELO3C030656.2Cucumber (Chinese Long) v3cucmedB556
MELO3C030656.2Watermelon (97103) v2medwmbB305
MELO3C030656.2Watermelon (97103) v2medwmbB357
MELO3C030656.2Wax gourdmedwgoB375
MELO3C030656.2Wax gourdmedwgoB443