MELO3C030625.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030625.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	ATP synthase subunit alpha
Location	chr04 : 21968893 .. 21969141 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAGGAAAGAGATATTGTCAAGCACACTGAATCGATTGTGGATGTTCCCACATAAAAGGCTATGCTCGAGCGTGTGGTCAATGCCTTGGGTGTGGCCATTAATGGAAGAGAGGCTCTCAACGATCACGAGCGAAGACGTGTCAAAGTGAAAGCCCCTGTGATCATTGAATGTAAATCAATGCACAAACCTTTACAAACAGGGTTAAAAGCGATGGATAGCCTAGTTCCTATATGTCGGGGCCAACGA

mRNA sequence

ATTAAGGAAAGAGATATTGTCAAGCACACTGAATCGATTGTGGATGTTCCCACATAAAAGGCTATGCTCGAGCGTGTGGTCAATGCCTTGGGTGTGGCCATTAATGGAAGAGAGGCTCTCAACGATCACGAGCGAAGACGTGTCAAAGTGAAAGCCCCTGTGATCATTGAATGTAAATCAATGCACAAACCTTTACAAACAGGGTTAAAAGCGATGGATAGCCTAGTTCCTATATGTCGGGGCCAACGA

Coding sequence (CDS)

ATGCTCGAGCGTGTGGTCAATGCCTTGGGTGTGGCCATTAATGGAAGAGAGGCTCTCAACGATCACGAGCGAAGACGTGTCAAAGTGAAAGCCCCTGTGATCATTGAATGTAAATCAATGCACAAACCTTTACAAACAGGGTTAAAAGCGATGGATAGCCTAGTTCCTATATGTCGGGGCCAACGA

Protein sequence

MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRGQR

Homology

[Close]

BLAST of MELO3C030625.2 vs. NCBI nr
Match: XP_025650675.1 (uncharacterized protein LOC112745747 [Arachis hypogaea])

HSP 1 Score: 96.7 bits (239), Expect = 3.0e-17
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVVNALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 112 MLGRVVNALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 171

Query: 61  QR 63
           QR
Sbjct: 172 QR 173

[Close]

BLAST of MELO3C030625.2 vs. NCBI nr
Match: XP_010647312.1 (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104878494 [Vitis vinifera])

HSP 1 Score: 96.3 bits (238), Expect = 3.9e-17
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KSMH+P+QTGLKA+DSLVPI RG
Sbjct: 148 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSMHEPMQTGLKAVDSLVPIGRG 207

Query: 61  QR 63
           QR
Sbjct: 208 QR 209

[Close]

BLAST of MELO3C030625.2 vs. NCBI nr
Match: AAQ74470.1 (F1-ATPase alpha subunit, partial (mitochondrion) [Aletris farinosa])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 69  MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIXRG 128

Query: 61  QR 63
           QR
Sbjct: 129 QR 130

[Close]

BLAST of MELO3C030625.2 vs. NCBI nr
Match: ACM48843.1 (ATPase alpha subunit, partial (mitochondrion) [Aletris lutea])

HSP 1 Score: 95.5 bits (236), Expect = 6.7e-17
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 43  MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIXRG 102

Query: 61  QR 63
           QR
Sbjct: 103 QR 104

[Close]

BLAST of MELO3C030625.2 vs. NCBI nr
Match: AAT69068.1 (F1-ATPase alpha subunit, partial (mitochondrion) [Schizanthus pinnatus])

HSP 1 Score: 95.1 bits (235), Expect = 8.8e-17
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 78  MLXRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 137

Query: 61  QR 63
           QR
Sbjct: 138 QR 139

[Close]

BLAST of MELO3C030625.2 vs. TAIR10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-19
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+A+GV I+G+ AL+DHE+RRV+VKAP I+E KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 375 MLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRG 434

Query: 61  QR 63
           QR
Sbjct: 435 QR 436

[Close]

BLAST of MELO3C030625.2 vs. TAIR10
Match: ATMG01190.1 (ATP synthase subunit 1)

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-19
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+A+GV I+G+ AL+DHE+RRV+VKAP I+E KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 105 MLGRVVDAMGVPIDGKGALSDHEQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  QR 63
           QR
Sbjct: 165 QR 166

[Close]

BLAST of MELO3C030625.2 vs. TAIR10
Match: ATCG00120.1 (ATP synthase subunit alpha)

HSP 1 Score: 61.2 bits (147), Expect = 2.5e-10
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 0


Query: 2   LERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRGQ 61
           L RV+NAL   I+GR  ++  E R ++  AP II  +S+++PLQTGL A+DS++PI RGQ
Sbjct: 105 LGRVINALANPIDGRGKISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQ 164

Query: 62  R 63
           R
Sbjct: 165 R 165

[Close]

BLAST of MELO3C030625.2 vs. Swiss-Prot
Match: sp|Q06735|ATPAM_BETVU (ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-19
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  QR 63
           QR
Sbjct: 165 QR 166

[Close]

BLAST of MELO3C030625.2 vs. Swiss-Prot
Match: sp|P18260|ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-19
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  QR 63
           QR
Sbjct: 165 QR 166

[Close]

BLAST of MELO3C030625.2 vs. Swiss-Prot
Match: sp|P05493|ATPAM_PEA (ATP synthase subunit alpha, mitochondrial OS=Pisum sativum OX=3888 GN=ATPA PE=3 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-19
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  QR 63
           QR
Sbjct: 165 QR 166

[Close]

BLAST of MELO3C030625.2 vs. Swiss-Prot
Match: sp|P24459|ATPAM_PHAVU (ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris OX=3885 GN=ATPA PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-19
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  QR 63
           QR
Sbjct: 165 QR 166

[Close]

BLAST of MELO3C030625.2 vs. Swiss-Prot
Match: sp|Q01915|ATPAM_SOYBN (ATP synthase subunit alpha, mitochondrial OS=Glycine max OX=3847 GN=ATPA PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.7e-19
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 164

Query: 61  QR 63
           QR
Sbjct: 165 QR 166

[Close]

BLAST of MELO3C030625.2 vs. TrEMBL
Match: tr|F6I2F8|F6I2F8_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0733g00010 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-17
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KSMH+P+QTGLKA+DSLVPI RG
Sbjct: 105 MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSMHEPMQTGLKAVDSLVPIGRG 164

Query: 61  QR 63
           QR
Sbjct: 165 QR 166

[Close]

BLAST of MELO3C030625.2 vs. TrEMBL
Match: tr|Q5VL97|Q5VL97_ALEFA (ATP synthase subunit alpha (Fragment) OS=Aletris farinosa OX=167569 GN=atpA PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 69  MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIXRG 128

Query: 61  QR 63
           QR
Sbjct: 129 QR 130

[Close]

BLAST of MELO3C030625.2 vs. TrEMBL
Match: tr|B9UZE1|B9UZE1_9LILI (ATP synthase subunit alpha (Fragment) OS=Aletris lutea OX=119991 GN=atpA PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 48/62 (77.42%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+GR AL+DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 43  MLGRVVDALGVPIDGRGALSDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIXRG 102

Query: 61  QR 63
           QR
Sbjct: 103 QR 104

[Close]

BLAST of MELO3C030625.2 vs. TrEMBL
Match: tr|M8C108|M8C108_AEGTA (ATP synthase subunit alpha, mitochondrial OS=Aegilops tauschii OX=37682 GN=F775_20153 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-17
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
           ML RVV+ALGV I+G+ AL+DHERR V+VKAP IIECKS+H+P+QTGLKA+DSLVPI RG
Sbjct: 88  MLGRVVDALGVPIDGKGALSDHERRCVEVKAPGIIECKSVHEPMQTGLKAVDSLVPIGRG 147

Query: 61  QR 63
           QR
Sbjct: 148 QR 149

[Close]

BLAST of MELO3C030625.2 vs. TrEMBL
Match: tr|R4V0L9|R4V0L9_9GENT (Atp1 (Fragment) OS=Voyria aurantiaca OX=931104 GN=atp1 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-17
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 1  MLERVVNALGVAINGREALNDHERRRVKVKAPVIIECKSMHKPLQTGLKAMDSLVPICRG 60
          ML  VVNALGV INGR AL DHERRRV+VKAP IIE KS+H+P+QTGLKA+DSLVPI RG
Sbjct: 36 MLGCVVNALGVPINGRGALRDHERRRVEVKAPGIIERKSVHEPMQTGLKAVDSLVPIGRG 95

Query: 61 QR 63
          QR
Sbjct: 96 QR 97

The following BLAST results are available for this feature:

BLAST of MELO3C030625.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025650675.1	3.0e-17	79.03	uncharacterized protein LOC112745747 [Arachis hypogaea]	[more]
XP_010647312.1	3.9e-17	79.03	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104878494 [Vitis vini...	[more]
AAQ74470.1	6.7e-17	77.42	F1-ATPase alpha subunit, partial (mitochondrion) [Aletris farinosa]	[more]
ACM48843.1	6.7e-17	77.42	ATPase alpha subunit, partial (mitochondrion) [Aletris lutea]	[more]
AAT69068.1	8.8e-17	77.42	F1-ATPase alpha subunit, partial (mitochondrion) [Schizanthus pinnatus]	[more]

BLAST of MELO3C030625.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07698.1	3.9e-19	70.97	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	3.9e-19	70.97	ATP synthase subunit 1	[more]
ATCG00120.1	2.5e-10	50.82	ATP synthase subunit alpha	[more]

BLAST of MELO3C030625.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q06735\|ATPAM_BETVU	3.7e-19	77.42	ATP synthase subunit alpha, mitochondrial OS=Beta vulgaris OX=161934 GN=ATPA PE=...	[more]
sp\|P18260\|ATPAM_HELAN	3.7e-19	77.42	ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus OX=4232 GN=ATPA P...	[more]
sp\|P05493\|ATPAM_PEA	3.7e-19	77.42	ATP synthase subunit alpha, mitochondrial OS=Pisum sativum OX=3888 GN=ATPA PE=3 ...	[more]
sp\|P24459\|ATPAM_PHAVU	3.7e-19	77.42	ATP synthase subunit alpha, mitochondrial OS=Phaseolus vulgaris OX=3885 GN=ATPA ...	[more]
sp\|Q01915\|ATPAM_SOYBN	3.7e-19	77.42	ATP synthase subunit alpha, mitochondrial OS=Glycine max OX=3847 GN=ATPA PE=3 SV...	[more]

BLAST of MELO3C030625.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|F6I2F8\|F6I2F8_VITVI	2.6e-17	79.03	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s0733g00010 PE=3 SV=...	[more]
tr\|Q5VL97\|Q5VL97_ALEFA	4.4e-17	77.42	ATP synthase subunit alpha (Fragment) OS=Aletris farinosa OX=167569 GN=atpA PE=3...	[more]
tr\|B9UZE1\|B9UZE1_9LILI	4.4e-17	77.42	ATP synthase subunit alpha (Fragment) OS=Aletris lutea OX=119991 GN=atpA PE=3 SV...	[more]
tr\|M8C108\|M8C108_AEGTA	5.8e-17	75.81	ATP synthase subunit alpha, mitochondrial OS=Aegilops tauschii OX=37682 GN=F775_...	[more]
tr\|R4V0L9\|R4V0L9_9GENT	5.8e-17	79.03	Atp1 (Fragment) OS=Voyria aurantiaca OX=931104 GN=atp1 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006754	ATP biosynthetic process
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006811	ion transport
biological_process	GO:0015992	proton transport
biological_process	GO:0006810	transport
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030625.2.1	MELO3C030625.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 1..62 e-value: 3.1E-16 score: 61.4
None	No IPR available	PANTHER	PTHR43089	FAMILY NOT NAMED	coord: 1..62
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..62

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030625.2	Cucumber (Gy14) v2	cgybmedB183
MELO3C030625.2	Wild cucumber (PI 183967)	cpimedB206
MELO3C030625.2	Cucumber (Chinese Long) v2	cumedB204
MELO3C030625.2	Watermelon (Charleston Gray)	medwcgB344
MELO3C030625.2	Cucumber (Chinese Long) v3	cucmedB208
MELO3C030625.2	Watermelon (97103) v2	medwmbB339