MELO3C030585.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030585.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	tRNA pseudouridine synthase
Location	chr04 : 17780228 .. 17780391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTGTAAGAAATATCTATTGGGAAGTTTGTAGATGAGACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGAATGTGTTGTGGTTGTTGGGCGCACTGACAAAGGGGTGACAGCTCTACAACAAGTTTGCACATTTTGTATGTTAGCTTCCTAA

mRNA sequence

GATTGTAAGAAATATCTATTGGGAAGTTTGTAGATGAGACGAAAGCTCAAATGCTGAAAGATAAATGCTTACCATTAGAAGAATGTGTTGTGGTTGTTGGGCGCACTGACAAAGGGGTGACAGCTCTACAACAAGTTTGCACATTTTGTATGTTAGCTTCCTAA

Coding sequence (CDS)

ATGCTGAAAGATAAATGCTTACCATTAGAAGAATGTGTTGTGGTTGTTGGGCGCACTGACAAAGGGGTGACAGCTCTACAACAAGTTTGCACATTTTGTATGTTAGCTTCCTAA

Protein sequence

MLKDKCLPLEECVVVVGRTDKGVTALQQVCTFCMLAS

Homology

[Close]

BLAST of MELO3C030585.2 vs. NCBI nr
Match: XP_024028370.1 (uncharacterized protein LOC21391583 isoform X2 [Morus notabilis])

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Sbjct: 170 LLKDKCLPLEACTVVAGRTDKGVTALQQVCSF 201

[Close]

BLAST of MELO3C030585.2 vs. NCBI nr
Match: XP_010106935.1 (uncharacterized protein LOC21391583 isoform X1 [Morus notabilis] >EXC12817.1 tRNA pseudouridine synthase A [Morus notabilis])

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Sbjct: 171 LLKDKCLPLEACTVVAGRTDKGVTALQQVCSF 202

[Close]

BLAST of MELO3C030585.2 vs. NCBI nr
Match: XP_008453520.1 (PREDICTED: tRNA pseudouridine synthase A [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           MLKDKCLPLE C VV GRTDKGVTAL+QVC+F
Sbjct: 162 MLKDKCLPLEGCAVVAGRTDKGVTALRQVCSF 193

[Close]

BLAST of MELO3C030585.2 vs. NCBI nr
Match: XP_015881667.1 (uncharacterized protein LOC107417573 [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1  MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
          +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Sbjct: 21 VLKDKCLPLEGCAVVAGRTDKGVTALQQVCSF 52

[Close]

BLAST of MELO3C030585.2 vs. NCBI nr
Match: XP_015881730.1 (uncharacterized protein LOC107417627 [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Sbjct: 172 VLKDKCLPLEGCAVVAGRTDKGVTALQQVCSF 203

[Close]

BLAST of MELO3C030585.2 vs. TAIR10
Match: AT5G35400.2 (Pseudouridine synthase family protein)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-06
Identity = 22/32 (68.75%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           +LK KC PLE  V+V GRTDKGV+AL QVC+F
Sbjct: 137 LLKKKCKPLEGRVLVAGRTDKGVSALNQVCSF 168

[Close]

BLAST of MELO3C030585.2 vs. TrEMBL
Match: tr|W9S3H9|W9S3H9_9ROSA (tRNA pseudouridine synthase OS=Morus notabilis OX=981085 GN=L484_008208 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.5e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           +LKDKCLPLE C VV GRTDKGVTALQQVC+F
Sbjct: 171 LLKDKCLPLEACTVVAGRTDKGVTALQQVCSF 202

[Close]

BLAST of MELO3C030585.2 vs. TrEMBL
Match: tr|A0A1S3BWI6|A0A1S3BWI6_CUCME (tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.4e-07
Identity = 27/32 (84.38%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           MLKDKCLPLE C VV GRTDKGVTAL+QVC+F
Sbjct: 162 MLKDKCLPLEGCAVVAGRTDKGVTALRQVCSF 193

[Close]

BLAST of MELO3C030585.2 vs. TrEMBL
Match: tr|A0A0A0LV59|A0A0A0LV59_CUCSA (tRNA pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_1G025830 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-06
Identity = 26/32 (81.25%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           MLKDKCLPLE C +V GRTDKGVTAL+QVC+F
Sbjct: 162 MLKDKCLPLEGCALVAGRTDKGVTALRQVCSF 193

[Close]

BLAST of MELO3C030585.2 vs. TrEMBL
Match: tr|A0A2P2K145|A0A2P2K145_RHIMU (tRNA pseudouridine synthase OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-05
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTFCML 36
           +LKDK  PLE C VV GRTDKGV+AL QVC+FCML
Sbjct: 162 LLKDKHKPLEGCAVVAGRTDKGVSALGQVCSFCML 196

[Close]

BLAST of MELO3C030585.2 vs. TrEMBL
Match: tr|V4UJT6|V4UJT6_9ROSI (tRNA pseudouridine synthase OS=Citrus clementina OX=85681 GN=CICLE_v10008288mg PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.3e-05
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MLKDKCLPLEECVVVVGRTDKGVTALQQVCTF 33
           +LK+KC PLE C +V GRTDKGVTALQQVC+F
Sbjct: 170 LLKEKCKPLEGCALVAGRTDKGVTALQQVCSF 201

The following BLAST results are available for this feature:

BLAST of MELO3C030585.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024028370.1	8.4e-07	84.38	uncharacterized protein LOC21391583 isoform X2 [Morus notabilis]	[more]
XP_010106935.1	8.4e-07	84.38	uncharacterized protein LOC21391583 isoform X1 [Morus notabilis] >EXC12817.1 tRN...	[more]
XP_008453520.1	1.4e-06	84.38	PREDICTED: tRNA pseudouridine synthase A [Cucumis melo]	[more]
XP_015881667.1	1.4e-06	84.38	uncharacterized protein LOC107417573 [Ziziphus jujuba]	[more]
XP_015881730.1	1.4e-06	84.38	uncharacterized protein LOC107417627 [Ziziphus jujuba]	[more]

BLAST of MELO3C030585.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35400.2	1.3e-06	68.75	Pseudouridine synthase family protein	[more]

BLAST of MELO3C030585.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030585.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|W9S3H9\|W9S3H9_9ROSA	5.5e-07	84.38	tRNA pseudouridine synthase OS=Morus notabilis OX=981085 GN=L484_008208 PE=3 SV=...	[more]
tr\|A0A1S3BWI6\|A0A1S3BWI6_CUCME	9.4e-07	84.38	tRNA pseudouridine synthase OS=Cucumis melo OX=3656 GN=LOC103494203 PE=3 SV=1	[more]
tr\|A0A0A0LV59\|A0A0A0LV59_CUCSA	2.1e-06	81.25	tRNA pseudouridine synthase OS=Cucumis sativus OX=3659 GN=Csa_1G025830 PE=3 SV=1	[more]
tr\|A0A2P2K145\|A0A2P2K145_RHIMU	1.8e-05	74.29	tRNA pseudouridine synthase OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|V4UJT6\|V4UJT6_9ROSI	2.3e-05	75.00	tRNA pseudouridine synthase OS=Citrus clementina OX=85681 GN=CICLE_v10008288mg P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009982	pseudouridine synthase activity
GO:0003723	RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0001522	pseudouridine synthesis
GO:0009451	RNA modification

Vocabulary: **INTERPRO**
Term	Definition
IPR020103	PsdUridine_synth_cat_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0009451	RNA modification
biological_process	GO:0008033	tRNA processing
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030585.2.1	MELO3C030585.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020103	Pseudouridine synthase, catalytic domain superfamily	SUPERFAMILY	SSF55120	Pseudouridine synthase	coord: 9..35

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030585.2	Cucumber (Gy14) v1	cgymedB561
MELO3C030585.2	Cucurbita maxima (Rimu)	cmamedB263
MELO3C030585.2	Bottle gourd (USVL1VR-Ls)	lsimedB456
MELO3C030585.2	Watermelon (Charleston Gray)	medwcgB338
MELO3C030585.2	Watermelon (97103) v1	medwmB361