MELO3C030584.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030584.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	DNA-dependent metalloprotease WSS1
Location	chr04 : 5933800 .. 5934877 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAGTCGTCGTCGAACCCACCACCGTCGTCCCTCATGCCCAGCCCGTACCTTGTCGTCATCGAATAGTCCATCGACCTTCGTTGTGCTCGCCACCACCGTCGAACATAAATGGCGAGTCAAGGTTTTTTTGGAGTTTTGGTAAATAATAATGTACTTACCAGACACTCAACTTTCTTTTTTTTCTTTTCTTTTCTTTTTTAGTCTGAAGTTTCCATCACGTTGTTTCTTATTACTTATAATGGAAGGATTTTTTGTTTTTTTGCATTTTCTCTTGGATTCTATATCTATTCCTTTTTTGCATTATTCTTGATGGTTGTTTGAAATGAAAAATTGAAGATATCATTTCTCATATCATTTAGTTTTTTTTTTTTTTGTAAAAAATGATGAAAGGAGAAATTTGTTTAACCAAGTCAAATTCCCTAAAATGTTTATTCTTGGTTTATCCCTGTGCTTTTTTAGTCTTGTGAACTAAGGAAGTGATGAATTTTTGTTGTTGTGCATTATGTTTGTCAATAAATTTGCAGTCCAAAAAATCCGGCACTTTTAGGGTTAAATGTGGGACGTGGAATTCGTGTGAAGTTAAAGGCTTCAAAGGCCAAATAGGGATGGAGATTTCTTCCATTCAATCAAGTTTTTGTTACAATGTTACACGAGTTTTTCCATAATCTTCATGGCCCTCGCAATGCCAATCTCTTCAAGCTTTGGGATGAGCTTTGAAAGGTGTATCATTTATGTTTGTTTTGTTTTCCTAGTCCAATATGATTTTGTAATAAATATCTGAAAAAGACACAAAGATTGATATTCATGTGTTGTCATAGGATCATGGTTAACTTATTTGCAACCTTTCATTTATTAGCCTTTGTAAGTGATGATGAATTTGATTGATTAAACTCTTTGCCATGGTTTGCCACCTGAAAAATTTGTTAGTAATTTATTGTATTACTTGGTAGATGATATAGTTCATTGTTATAAATCCCAAATCTCTAATTCAACTGATTAGCATTAGGAATTGTCTAATTTTATTACATTGTTGTTCTTTATACAGTAAGCTTATGAGAACTAAATGTGGCATC

mRNA sequence

ATGCCTAGTCGTCGTCGAACCCACCACCGTCGTCCCTCATGCCCAGCCCGTACCTTGTCGTCATCGAATAGTCCATCGACCTTCGTTGTGCTCGCCACCACCGTCGAACATAAATGGCGAGTCAAGTCTGAAGTTTCCATCACTCCAAAAAATCCGGCACTTTTAGGGTTAAAtGTGGGACGTGGAATTCGTGTGAAGTTAAAGGCTTCAAAGGCCAAATAGGGATGGAGATTTCTTCCATTCAATCAAGTTTTTGTTACAATGTTACACGAGTTTTTCCATAATCTTCATGGCCCTCGCAATGCCAATCTCTTCAAGCTTTGGGATGAGCTTTGAAAGGTGTATCATTTATGTTTGTTTTGTTTTCCTAGTCCAATATGATTTTGTAATAAATATCTGAAAAAGACACAAAGATTGATATTCATGTGTTGTCATAGGATCATGGTTAACTTATTTGCAACCTTTCATTTATTAGCCTTTGTAAGTGATGATGAATTTGATTGATTAAACTCTTTGCCATGGTTTGCCACCTGAAAAATTTGTTAGTAATTTATTGTATTACTTGGTAGATGATATAGTTCATTGTTATAAATCCCAAATCTCTAATTCAACTGATTAGCATTAGGAATTGTCTAATTTTATTACATTGTTGTTCTTTATACAGTAAGCTTATGAGAACTAAATGTGGCATC

Coding sequence (CDS)

ATGCCTAGTCGTCGTCGAACCCACCACCGTCGTCCCTCATGCCCAGCCCGTACCTTGTCGTCATCGAATAGTCCATCGACCTTCGTTGTGCTCGCCACCACCGTCGAACATAAATGGCGAGTCAAGTCTGAAGTTTCCATCACTCCAAAAAATCCGGCACTTTTAGGGTTAAATGTGGGACGTGGAATTCGTGTGAAGTTAAAGGCTTCAAAGGCCAAATAG

Protein sequence

MPSRRRTHHRRPSCPARTLSSSNSPSTFVVLATTVEHKWRVKSEVSITPKNPALLGLNVGRGIRVKLKASKAK

Homology

[Close]

BLAST of MELO3C030584.2 vs. NCBI nr
Match: XP_016903320.1 (PREDICTED: uncharacterized protein LOC107992124 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 29/41 (70.73%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 2   PSRRRTHHRRPSCPARTLSSSNSPSTFVVLATTVEHKWRVK 43
           PSRR THHRRPSCP RTL          VLATTVEHKWRVK
Sbjct: 71  PSRRITHHRRPSCPTRTLXXXXXXXXXXVLATTVEHKWRVK 111

[Close]

BLAST of MELO3C030584.2 vs. NCBI nr
Match: XP_016902958.1 (PREDICTED: uncharacterized protein LOC103501234 [Cucumis melo])

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 36 EHKWRVKSEVSITPKNPALLGLNVGRGIRVKLK 69
          +HKWRVK      PKNPALLGLNVGRGI VKL+
Sbjct: 40 KHKWRVKVLSEFCPKNPALLGLNVGRGIHVKLR 72

[Close]

BLAST of MELO3C030584.2 vs. NCBI nr
Match: XP_004150300.2 (PREDICTED: uncharacterized protein LOC101209563 [Cucumis sativus] >XP_011658942.1 PREDICTED: uncharacterized protein LOC101209563 [Cucumis sativus] >KGN44068.1 hypothetical protein Csa_7G161030 [Cucumis sativus])

HSP 1 Score: 52.4 bits (124), Expect = 7.7e-04
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 36 EHKWRVKSEVSITPKNPALLGLNVGRGIRVKLK 69
          +HKWRVK      PKNPALLGLNVGRGI VKL+
Sbjct: 40 KHKWRVKVLSEFCPKNPALLGLNVGRGIHVKLR 72

[Close]

BLAST of MELO3C030584.2 vs. TAIR10
Match: AT1G55915.1 (zinc ion binding)

HSP 1 Score: 41.2 bits (95), Expect = 3.2e-04
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 0


Query: 38 KWRVKSEVSITPKNPALLGLNVGRGIRVKLK 69
          KWRVK      P NP LLG+NV RG++VKL+
Sbjct: 46 KWRVKLLSEFCPTNPRLLGVNVNRGVQVKLR 76

[Close]

BLAST of MELO3C030584.2 vs. TrEMBL
Match: tr|A0A1S4E5R6|A0A1S4E5R6_CUCME (uncharacterized protein LOC107992124 OS=Cucumis melo OX=3656 GN=LOC107992124 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.2e-06
Identity = 29/41 (70.73%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 2   PSRRRTHHRRPSCPARTLSSSNSPSTFVVLATTVEHKWRVK 43
           PSRR THHRRPSCP RTL          VLATTVEHKWRVK
Sbjct: 71  PSRRITHHRRPSCPTRTLXXXXXXXXXXVLATTVEHKWRVK 111

[Close]

BLAST of MELO3C030584.2 vs. TrEMBL
Match: tr|A0A1S4E403|A0A1S4E403_CUCME (uncharacterized protein LOC103501234 OS=Cucumis melo OX=3656 GN=LOC103501234 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-04
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 36 EHKWRVKSEVSITPKNPALLGLNVGRGIRVKLK 69
          +HKWRVK      PKNPALLGLNVGRGI VKL+
Sbjct: 40 KHKWRVKVLSEFCPKNPALLGLNVGRGIHVKLR 72

[Close]

BLAST of MELO3C030584.2 vs. TrEMBL
Match: tr|A0A0A0K3J6|A0A0A0K3J6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G161030 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-04
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 36 EHKWRVKSEVSITPKNPALLGLNVGRGIRVKLK 69
          +HKWRVK      PKNPALLGLNVGRGI VKL+
Sbjct: 40 KHKWRVKVLSEFCPKNPALLGLNVGRGIHVKLR 72

The following BLAST results are available for this feature:

BLAST of MELO3C030584.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016903320.1	1.4e-05	70.73	PREDICTED: uncharacterized protein LOC107992124 [Cucumis melo]	[more]
XP_016902958.1	7.7e-04	72.73	PREDICTED: uncharacterized protein LOC103501234 [Cucumis melo]	[more]
XP_004150300.2	7.7e-04	72.73	PREDICTED: uncharacterized protein LOC101209563 [Cucumis sativus] >XP_011658942....	[more]

BLAST of MELO3C030584.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55915.1	3.2e-04	58.06	zinc ion binding	[more]

BLAST of MELO3C030584.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030584.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E5R6\|A0A1S4E5R6_CUCME	9.2e-06	70.73	uncharacterized protein LOC107992124 OS=Cucumis melo OX=3656 GN=LOC107992124 PE=...	[more]
tr\|A0A1S4E403\|A0A1S4E403_CUCME	5.1e-04	72.73	uncharacterized protein LOC103501234 OS=Cucumis melo OX=3656 GN=LOC103501234 PE=...	[more]
tr\|A0A0A0K3J6\|A0A0A0K3J6_CUCSA	5.1e-04	72.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G161030 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013536	WLM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030584.2.1	MELO3C030584.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013536	WLM domain	PFAM	PF08325	WLM	coord: 30..68 e-value: 1.2E-5 score: 25.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030584.2	Cucumber (Gy14) v2	cgybmedB186
MELO3C030584.2	Cucumber (Gy14) v1	cgymedB560
MELO3C030584.2	Cucurbita maxima (Rimu)	cmamedB031
MELO3C030584.2	Cucurbita maxima (Rimu)	cmamedB487
MELO3C030584.2	Cucurbita moschata (Rifu)	cmomedB020
MELO3C030584.2	Cucurbita moschata (Rifu)	cmomedB474
MELO3C030584.2	Cucurbita pepo (Zucchini)	cpemedB614
MELO3C030584.2	Cucurbita pepo (Zucchini)	cpemedB859
MELO3C030584.2	Wild cucumber (PI 183967)	cpimedB209
MELO3C030584.2	Cucumber (Chinese Long) v2	cumedB208
MELO3C030584.2	Bottle gourd (USVL1VR-Ls)	lsimedB325
MELO3C030584.2	Watermelon (Charleston Gray)	medwcgB325
MELO3C030584.2	Watermelon (97103) v1	medwmB364
MELO3C030584.2	Silver-seed gourd	carmedB0108
MELO3C030584.2	Silver-seed gourd	carmedB0934
MELO3C030584.2	Cucumber (Chinese Long) v3	cucmedB212
MELO3C030584.2	Watermelon (97103) v2	medwmbB319
MELO3C030584.2	Wax gourd	medwgoB386