MELO3C030474.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030474.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Aldo/keto reductase family oxidoreductase
Location	chr04 : 10652657 .. 10652988 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTGATCACTCACCGGAGCTTTTTGAACCTTACTATCTTTAAATCCTTCACGGCTGAGACAAGAAGGCGCTATGAGAGGAGAAAGCTTGGAGCTAAAAGCTCTGTTAAGTGCTCTCAAACATCAGAAGGGTTTGCCTAAACTGTTATGGTGTCAAATGGCAAGGATTTGTTAGAATTTTGTCAAGTCCTCAATGGAATGTGGCAGATCAGCGATGGATGGGGGAAAATTGATCGTGACGCCGCGTGGAGGCAATGCTCCGATATGCCGACGTCGGACTTACAACCTTTGATATGGCAGACCACTATTCTAAAGCATCTCTGCATTGA

mRNA sequence

ATGACAGTGATCACTCACCGGAGCTTTTTGAACCTTACTATCTTTAAATCCTTCACGGCTGAGACAAGAAGGCGCTATGAGAGGAGAAAGCTTGGAGCTAAAAGCTCTGTTAAGTGCTCTCAAACATCAGAAGGGTTTGCCTAAACTGTTATGGTGTCAAATGGCAAGGATTTGTTAGAATTTTGTCAAGTCCTCAATGGAATGTGGCAGATCAGCGATGGATGGGGGAAAATTGATCGTGACGCCGCGTGGAGGCAATGCTCCGATATGCCGACGTCGGACTTACAACCTTTGATATGGCAGACCACTATTCTAAAGCATCTCTGCATTGA

Coding sequence (CDS)

ATGGTGTCAAATGGCAAGGATTTGTTAGAATTTTGTCAAGTCCTCAATGGAATGTGGCAGATCAGCGATGGATGGGGGAAAATTGATCGTGACGCCGCGTGGAGGCAATGCTCCGATATGCCGACGTCGGACTTACAACCTTTGATATGGCAGACCACTATTCTAAAGCATCTCTGCATT

Protein sequence

MVSNGKDLLEFCQVLNGMWQISDGWGKIDRDAAWRQCSDMPTSDLQPLIWQTTILKHLCI

Homology

[Close]

BLAST of MELO3C030474.2 vs. NCBI nr
Match: XP_008458596.1 (PREDICTED: flagellar radial spoke protein 5 isoform X3 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474.2 vs. NCBI nr
Match: XP_016902264.1 (PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis melo])

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474.2 vs. NCBI nr
Match: XP_004145800.1 (PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis sativus] >KGN46941.1 hypothetical protein Csa_6G151780 [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRD A
Sbjct: 53 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDDA 84

[Close]

BLAST of MELO3C030474.2 vs. NCBI nr
Match: XP_021716409.1 (flagellar radial spoke protein 5-like isoform X2 [Chenopodium quinoa])

HSP 1 Score: 59.3 bits (142), Expect = 5.2e-06
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 1  MVSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          +V NGKD LE C+V+NGMWQ S GWGKIDRD A
Sbjct: 48 VVKNGKDYLEMCRVVNGMWQTSGGWGKIDRDNA 80

[Close]

BLAST of MELO3C030474.2 vs. NCBI nr
Match: XP_017603495.1 (PREDICTED: flagellar radial spoke protein 5 isoform X1 [Gossypium arboreum] >KHG07915.1 hypothetical protein F383_07945 [Gossypium arboreum])

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-06
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          V NG D LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 60 VKNGNDSLEICRVLNGMWQTSGGWGRIDRDAA 91

[Close]

BLAST of MELO3C030474.2 vs. TAIR10
Match: AT2G27680.1 (NAD(P)-linked oxidoreductase superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.3e-08
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          + NG D LE C+VLNGMWQ S GWGKIDR+ A
Sbjct: 49 LKNGNDSLEICRVLNGMWQTSGGWGKIDRNDA 80

[Close]

BLAST of MELO3C030474.2 vs. TrEMBL
Match: tr|A0A1S4E206|A0A1S4E206_CUCME (flagellar radial spoke protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497952 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474.2 vs. TrEMBL
Match: tr|A0A1S3C7R4|A0A1S3C7R4_CUCME (flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497952 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.0e-07
Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 52 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDAA 83

[Close]

BLAST of MELO3C030474.2 vs. TrEMBL
Match: tr|A0A0A0KGQ2|A0A0A0KGQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151780 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          VSNGKD LE C+VLNGMWQ S GWG+IDRD A
Sbjct: 53 VSNGKDSLEICRVLNGMWQTSGGWGRIDRDDA 84

[Close]

BLAST of MELO3C030474.2 vs. TrEMBL
Match: tr|A0A2U1QJ74|A0A2U1QJ74_ARTAN (Flagellar radial spoke protein 5 OS=Artemisia annua OX=35608 GN=CTI12_AA023230 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 1  MVSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          +V NGKD LE C+V+NGMWQ S GWGKIDRD A
Sbjct: 47 VVKNGKDSLEICRVVNGMWQTSGGWGKIDRDNA 79

[Close]

BLAST of MELO3C030474.2 vs. TrEMBL
Match: tr|A0A0B0N536|A0A0B0N536_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_07945 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 2  VSNGKDLLEFCQVLNGMWQISDGWGKIDRDAA 34
          V NG D LE C+VLNGMWQ S GWG+IDRDAA
Sbjct: 60 VKNGNDSLEICRVLNGMWQTSGGWGRIDRDAA 91

The following BLAST results are available for this feature:

BLAST of MELO3C030474.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458596.1	6.1e-07	81.25	PREDICTED: flagellar radial spoke protein 5 isoform X3 [Cucumis melo]	[more]
XP_016902264.1	6.1e-07	81.25	PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis melo]	[more]
XP_004145800.1	3.0e-06	78.13	PREDICTED: flagellar radial spoke protein 5 isoform X1 [Cucumis sativus] >KGN469...	[more]
XP_021716409.1	5.2e-06	72.73	flagellar radial spoke protein 5-like isoform X2 [Chenopodium quinoa]	[more]
XP_017603495.1	6.7e-06	75.00	PREDICTED: flagellar radial spoke protein 5 isoform X1 [Gossypium arboreum] >KHG...	[more]

BLAST of MELO3C030474.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27680.1	2.3e-08	68.75	NAD(P)-linked oxidoreductase superfamily protein	[more]

BLAST of MELO3C030474.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030474.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E206\|A0A1S4E206_CUCME	4.0e-07	81.25	flagellar radial spoke protein 5 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
tr\|A0A1S3C7R4\|A0A1S3C7R4_CUCME	4.0e-07	81.25	flagellar radial spoke protein 5 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
tr\|A0A0A0KGQ2\|A0A0A0KGQ2_CUCSA	2.0e-06	78.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G151780 PE=4 SV=1	[more]
tr\|A0A2U1QJ74\|A0A2U1QJ74_ARTAN	4.5e-06	72.73	Flagellar radial spoke protein 5 OS=Artemisia annua OX=35608 GN=CTI12_AA023230 P...	[more]
tr\|A0A0B0N536\|A0A0B0N536_GOSAR	4.5e-06	75.00	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_07945 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009505	plant-type cell wall
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030474.2.1	MELO3C030474.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030474.2	Cucurbita maxima (Rimu)	cmamedB032
MELO3C030474.2	Cucurbita maxima (Rimu)	cmamedB034
MELO3C030474.2	Cucurbita maxima (Rimu)	cmamedB493
MELO3C030474.2	Cucurbita moschata (Rifu)	cmomedB021
MELO3C030474.2	Cucurbita moschata (Rifu)	cmomedB023
MELO3C030474.2	Cucurbita moschata (Rifu)	cmomedB480
MELO3C030474.2	Cucurbita pepo (Zucchini)	cpemedB619
MELO3C030474.2	Cucurbita pepo (Zucchini)	cpemedB860
MELO3C030474.2	Cucurbita pepo (Zucchini)	cpemedB862
MELO3C030474.2	Wild cucumber (PI 183967)	cpimedB195
MELO3C030474.2	Cucumber (Chinese Long) v2	cumedB196
MELO3C030474.2	Bottle gourd (USVL1VR-Ls)	lsimedB322
MELO3C030474.2	Bottle gourd (USVL1VR-Ls)	lsimedB326
MELO3C030474.2	Watermelon (Charleston Gray)	medwcgB328
MELO3C030474.2	Watermelon (Charleston Gray)	medwcgB332
MELO3C030474.2	Watermelon (97103) v1	medwmB369
MELO3C030474.2	Silver-seed gourd	carmedB0898
MELO3C030474.2	Silver-seed gourd	carmedB0899
MELO3C030474.2	Silver-seed gourd	carmedB1001
MELO3C030474.2	Cucumber (Chinese Long) v3	cucmedB200
MELO3C030474.2	Watermelon (97103) v2	medwmbB322
MELO3C030474.2	Watermelon (97103) v2	medwmbB326
MELO3C030474.2	Wax gourd	medwgoB435
MELO3C030474.2	Wax gourd	medwgoB438
MELO3C030474.2	Cucumber (Gy14) v2	cgybmedB175