MELO3C030473.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030473.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionglial fibrillary acidic protein-like
Locationchr04 : 10483196 .. 10483529 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCGCTGTGAAAGTCGAGGTTCTACGACATTCAATTAAAGAATACAAGCCCCAGCTTATAGAAGCGGAAAGAAAAAATAGATTTATGTAAAAAGCCGTTAACAATTCTGAAGGGTAGTTGTTGATATATCGCAAAGCAAGAGAGGTCGCAATAGATGATTATGCTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTACGAGATATTGAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGGGCTGAAAAATTAAGACAAATGACAAGGATAACAGATCAATTCTCAGTGCAAGCTAGAA

mRNA sequence

ACCGCTGTGAAAGTCGAGGTTCTACGACATTCAATTAAAGAATACAAGCCCCAGCTTATAGAAGCGGAAAGAAAAAATAGATTTATGTAAAAAGCCGTTAACAATTCTGAAGGGTAGTTGTTGATATATCGCAAAGCAAGAGAGGTCGCAATAGATGATTATGCTCAATTAATAGAAAAATATCAAGAAATGTCGATAGATTTCATGATGTGGAGGGACGAGTACGAGATATTGAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGGGCTGAAAAATTAAGACAAATGACAAGGATAACAGATCAATTCTCAGTGCAAGCTAGAA

Coding sequence (CDS)

ATGTCGATAGATTTCATGATGTGGAGGGACGAGTACGAGATATTGAGACGCAAGTATGATGGTGCTAGAGGTCAGATGGAACAAGGGGCTGAAAAATTAAGACAAATGACAAGGATAACAGATCAATTCTCAGTGCAAGCTAGA

Protein sequence

MSIDFMMWRDEYEILRRKYDGARGQMEQGAEKLRQMTRITDQFSVQAR
Homology
[Close]
BLAST of MELO3C030473.2 vs. NCBI nr
Match: XP_008464352.1 (PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo])

HSP 1 Score: 76.6 bits (187), Expect = 2.5e-11
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 1   MSIDFMMWRDEYEILRRKYDGARGQMEQGAEKLRQMTRITDQFSVQAR 49
           MSIDFMMW+DEYE LRRKYD A  +ME+GAEKLRQM  + DQFSVQAR
Sbjct: 181 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQAR 228

[Close]
BLAST of MELO3C030473.2 vs. TrEMBL
Match: tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME (glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0 

Query: 1   MSIDFMMWRDEYEILRRKYDGARGQMEQGAEKLRQMTRITDQFSVQAR 49
           MSIDFMMW+DEYE LRRKYD A  +ME+GAEKLRQM  + DQFSVQAR
Sbjct: 181 MSIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVADQFSVQAR 228

The following BLAST results are available for this feature:
BLAST of MELO3C030473.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464352.12.5e-1177.08PREDICTED: glial fibrillary acidic protein-like, partial [Cucumis melo][more]
BLAST of MELO3C030473.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C030473.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C030473.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CLQ1|A0A1S3CLQ1_CUCME1.7e-1177.08glial fibrillary acidic protein-like OS=Cucumis melo OX=3656 GN=LOC103502260 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030473.2.1MELO3C030473.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030473.2Cucumber (Gy14) v2cgybmedB175
MELO3C030473.2Cucumber (Gy14) v1cgymedB444
MELO3C030473.2Cucurbita maxima (Rimu)cmamedB032
MELO3C030473.2Cucurbita maxima (Rimu)cmamedB034
MELO3C030473.2Cucurbita moschata (Rifu)cmomedB021
MELO3C030473.2Cucurbita moschata (Rifu)cmomedB023
MELO3C030473.2Cucurbita pepo (Zucchini)cpemedB860
MELO3C030473.2Cucurbita pepo (Zucchini)cpemedB862
MELO3C030473.2Wild cucumber (PI 183967)cpimedB195
MELO3C030473.2Cucumber (Chinese Long) v2cumedB196
MELO3C030473.2Bottle gourd (USVL1VR-Ls)lsimedB322
MELO3C030473.2Bottle gourd (USVL1VR-Ls)lsimedB326
MELO3C030473.2Watermelon (Charleston Gray)medwcgB328
MELO3C030473.2Watermelon (Charleston Gray)medwcgB332
MELO3C030473.2Watermelon (97103) v1medwmB369
MELO3C030473.2Silver-seed gourdcarmedB0898
MELO3C030473.2Silver-seed gourdcarmedB0899
MELO3C030473.2Cucumber (Chinese Long) v3cucmedB200
MELO3C030473.2Watermelon (97103) v2medwmbB322
MELO3C030473.2Watermelon (97103) v2medwmbB326
MELO3C030473.2Wax gourdmedwgoB435
MELO3C030473.2Wax gourdmedwgoB438