MELO3C030428.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030428.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUnknown protein
Locationchr04 : 7472723 .. 7473067 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGACAAGGCTGAGGCCTAAAGAACTAGGGCATGTTAACTCCCAACGACCAACGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGATGAGCACCCAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACTTGACTTTCTGTATGGACCTATCAAGGCTCTGAAATGGGAAAACGTTTTCAGAGGTGAGATAAAAGTAAGTCTGGGTATAGTAGACATATTTTATGTGACAAAATACCATCCCGATGATTGA

mRNA sequence

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGACAAGGCTGAGGCCTAAAGAACTAGGGCATGTTAACTCCCAACGACCAACGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGATGAGCACCCAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACTTGACTTTCTGTATGGACCTATCAAGGCTCTGAAATGGGAAAACGTTTTCAGAGGTGAGATAAAAGTAAGTCTGGGTATAGTAGACATATTTTATGTGACAAAATACCATCCCGATGATTGA

Coding sequence (CDS)

ATGGAGGAGTTCAGTAGAGAAATTAAGAGAATGAGCCCATTGGAGACAAGGCTGAGGCCTAAAGAACTAGGGCATGTTAACTCCCAACGACCAACGAAGAGTAAGAGTAAGGTGGGAACATCCAAACCTAATGATGTCCAAAAAGGGAGTAAGATGAGCACCCAAGACTTGGATAAACTGATCAAGATTGAAAAGCGGTTGCTCCCATTCAACGATCATCTACTTGACTTTCTGTATGGACCTATCAAGGCTCTGAAATGGGAAAACGTTTTCAGAGGTGAGATAAAAGTAAGTCTGGGTATAGTAGACATATTTTATGTGACAAAATACCATCCCGATGATTGA

Protein sequence

MEEFSREIKRMSPLETRLRPKELGHVNSQRPTKSKSKVGTSKPNDVQKGSKMSTQDLDKLIKIEKRLLPFNDHLLDFLYGPIKALKWENVFRGEIKVSLGIVDIFYVTKYHPDD
Homology
[Close]
BLAST of MELO3C030428.2 vs. NCBI nr
Match: KGN64973.1 (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 52  MSTQDLDKLIKIEKRLLPFNDHLLDFLYGPIKALKWENVFRGEIKVSLGIVDIFYVTKYH 111
           MS  +LD+LIKIEK LL FN  L DFLY PIKALKWE  F  E KV   +VD+FY TK+H
Sbjct: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60

Query: 112 PDD 115
           P +
Sbjct: 61  PKE 63

[Close]
BLAST of MELO3C030428.2 vs. NCBI nr
Match: KGN57764.1 (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 7.2e-09
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 0 

Query: 1   MEEFSREIKRMSPLETRLRPKELGHVNSQRPTKSKSKVGTSKPNDVQKGSKMSTQDLDKL 60
           +EE SREI+RMSP E+  +             K ++K GTSK    QKG K         
Sbjct: 82  VEELSREIERMSPTESPGQIXXXXXXXXXXXXKRQTKAGTSK----QKGGK--------- 141

Query: 61  IKIEKRLLPFNDHLLDFLYGPIKALKWENVFRGEIKVSLGIVDIFYVTKYHP 113
               K LL FN  L DFL+  IKALKWE +   E +V L +V++FY  K+HP
Sbjct: 142 ----KGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]
BLAST of MELO3C030428.2 vs. NCBI nr
Match: KGN53624.1 (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 8.3e-05
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 26 VNSQRP-TKSKSKVGTSKPN--DVQKGSKMSTQDLDKLIKIEKRLLPFNDHLLDFLYGPI 85
          ++SQ P  + K KV   +P+   ++KG  + T +LDKLIKIEK LLPF   L DFL  PI
Sbjct: 3  LDSQAPNVRKKVKVKRERPDLGMLKKGKMVGTPELDKLIKIEKGLLPFKGPLPDFLPDPI 62

Query: 86 KALKWENVF 92
          KA KW+  F
Sbjct: 63 KAFKWKKFF 71

[Close]
BLAST of MELO3C030428.2 vs. TrEMBL
Match: tr|A0A0A0LT82|A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.4e-14
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 0 

Query: 52  MSTQDLDKLIKIEKRLLPFNDHLLDFLYGPIKALKWENVFRGEIKVSLGIVDIFYVTKYH 111
           MS  +LD+LIKIEK LL FN  L DFLY PIKALKWE  F  E KV   +VD+FY TK+H
Sbjct: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60

Query: 112 PDD 115
           P +
Sbjct: 61  PKE 63

[Close]
BLAST of MELO3C030428.2 vs. TrEMBL
Match: tr|A0A0A0L9V9|A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-09
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 0 

Query: 1   MEEFSREIKRMSPLETRLRPKELGHVNSQRPTKSKSKVGTSKPNDVQKGSKMSTQDLDKL 60
           +EE SREI+RMSP E+  +             K ++K GTSK    QKG K         
Sbjct: 82  VEELSREIERMSPTESPGQIXXXXXXXXXXXXKRQTKAGTSK----QKGGK--------- 141

Query: 61  IKIEKRLLPFNDHLLDFLYGPIKALKWENVFRGEIKVSLGIVDIFYVTKYHP 113
               K LL FN  L DFL+  IKALKWE +   E +V L +V++FY  K+HP
Sbjct: 142 ----KGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]
BLAST of MELO3C030428.2 vs. TrEMBL
Match: tr|A0A0A0KXQ2|A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-05
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 26 VNSQRP-TKSKSKVGTSKPN--DVQKGSKMSTQDLDKLIKIEKRLLPFNDHLLDFLYGPI 85
          ++SQ P  + K KV   +P+   ++KG  + T +LDKLIKIEK LLPF   L DFL  PI
Sbjct: 3  LDSQAPNVRKKVKVKRERPDLGMLKKGKMVGTPELDKLIKIEKGLLPFKGPLPDFLPDPI 62

Query: 86 KALKWENVF 92
          KA KW+  F
Sbjct: 63 KAFKWKKFF 71

The following BLAST results are available for this feature:
BLAST of MELO3C030428.2 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64973.11.3e-1361.90hypothetical protein Csa_1G169970 [Cucumis sativus][more]
KGN57764.17.2e-0941.07hypothetical protein Csa_3G283010 [Cucumis sativus][more]
KGN53624.18.3e-0549.28hypothetical protein Csa_4G091900 [Cucumis sativus][more]
BLAST of MELO3C030428.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C030428.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C030428.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT82|A0A0A0LT82_CUCSA8.4e-1461.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169970 PE=4 SV=1[more]
tr|A0A0A0L9V9|A0A0A0L9V9_CUCSA4.8e-0941.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G283010 PE=4 SV=1[more]
tr|A0A0A0KXQ2|A0A0A0KXQ2_CUCSA5.5e-0549.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G091900 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030428.2.1MELO3C030428.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..53
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030428.2Wax gourdmedwgoB438
MELO3C030428.2Cucumber (Gy14) v2cgybmedB186
MELO3C030428.2Cucumber (Gy14) v1cgymedB560
MELO3C030428.2Cucurbita maxima (Rimu)cmamedB031
MELO3C030428.2Cucurbita maxima (Rimu)cmamedB487
MELO3C030428.2Cucurbita moschata (Rifu)cmomedB020
MELO3C030428.2Cucurbita moschata (Rifu)cmomedB474
MELO3C030428.2Cucurbita pepo (Zucchini)cpemedB859
MELO3C030428.2Wild cucumber (PI 183967)cpimedB209
MELO3C030428.2Cucumber (Chinese Long) v2cumedB208
MELO3C030428.2Bottle gourd (USVL1VR-Ls)lsimedB325
MELO3C030428.2Watermelon (Charleston Gray)medwcgB325
MELO3C030428.2Watermelon (97103) v1medwmB364
MELO3C030428.2Cucumber (Chinese Long) v3cucmedB212
MELO3C030428.2Watermelon (97103) v2medwmbB319