MELO3C030248.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030248.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionRibosome biogenesis protein BRX1 homolog 2
Locationchr03 : 21559607 .. 21562567 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTGTTGGCATAACTATTGTTGCCAATTCCTCCCCTCATGTGAAATTTTTTCTCAATATTCATATGGGTAAAGATTGGGAGTTTGAGACTGTTCTTCTCTGGTTTTTCTTCTTCTAGGCTTGGATGAGTTCATGCTCCTTTTAAATGTAGAATTTGAAAAAAGGATCTAACTATTTTTGTACACCCATCCCGGATTGGAACAAATAATTACCATAATTTCTTCTTTTCTTATGATATTTCCTTTCATAAATAGTGGCTACTTTCTTACCTTCTTAAGAGGGGCCATTGTGTTGATTCAGAAAATGTAATAAGTGATGCACACTAGGGGTTGTTTGCCCAAGGTGGAATGAGATGGTTTGGGTCATGACAAACTAATTCTGTTTTTCACTTTTTTTATGCCTTCATAATCTCATTTCTATCCTACCATCAATTCTTTATGCATTTCAATGTCAATCATATTTTCATTAAATCTGATTACATTTTAGTCTTTAAACTACTTTTTCTTTAAATTTTTAACACGTGAGACTTTAGAATTTTGAGTCTTCAAACCACTGCTCTGTGATTTCTGTTGGTTGTTGGGCTTAATATTTTCAAAATGTGCTTTTACTTGTACGACTTCATATTATGGTTGGCTATTGGATCTTAAATCATGTCTGAATTTTTTTTTTTTTTTTTTTTGTTGGAAATAACAAATTTCTTTCCTTCTTAAAGTTGTAGAATTGGGATTCTTTTGCTTTTGGATTATATTGAGTTTCTATATCTATATTTTTTTTTTTTTTTCTTTTTTACAACTAAAACGTTGAAGCTTCTGACCGTCGACCAACGTCCTTCAAACAGTCTTATTAGACGAAAACGAAAAGCTACCGGAATAAATGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGAACAAAAATGAAAACGCTTTGTTCTGTACGACCGCCGACCATTAAGCTATTGAAGTTATCCTTGTTCTTTATAGAAAATCTTAGAAGATGGATGTTTCAACATTTACCATTCATTTTTCTTTGCAGGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGGTATCTTAGGTTATGTTTCATTTCACTTGAATTCGTAATATGCTTTTCTACACTCTCATGAGTCATTCATTTAAGGAAAAGTGTTATATCTTTCCAATACACCCGTAGTTATTATTTATACACTTGCGTGGGTTGAGAAAGCATCTTCAAAATTATTGAGGATAGGCCATGATTATAGTTCAAGGAATTGGATCTTTCAACTTCAACATCCTCGTTATTAAGGCAATAACTTTGGTAGTATATGAATCCAAAACCTTTTTTATGTATTGAATATCAGGAAAGGTTTACAGCATCGTAGTTAAACAATATTAtAATGTAATTGTTTCTTTTTCTAGAATAAGTGTTGAATGTTCTATCAAGTTTAGTCCAATTGGAATGTAAATAAGAGCAAGATTTTCTTCATTGCTGGGTAATGTTATGATGGAGAATATTATGATAGAATGGTTGCAATGGTTATTTTACTCTTTCCAGAGAACATGGTAGCATGGGCTTTTTCTTACCAGGTTGATTCAATTCTCATTTTGGTAGCTCCTCTCTTCTTCAATCTTGATCTCTATTATCACTTACTTGCATGCTTTAGATTTAATTGGCACTTTGCATAAGAAAACTAAAAGACTCTATGTTTTTTCCTATCTCAATCTGCTTGGGATGATGAACTTTTTTTTTTTTTTTTTTTTTTTATCTTGATTGCATTTTTGTTCTTTCAGTTCAATGATTTTGGTACTAATAGAGGACCGACAGCCAAGTATCTTAATCCAAGTTTTCTTACTTCTCCATTTTTTTTTTTTAGCTTTCAGTGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAGCTTATGAAGGAAATGATTATTCAGGTACCAATGGCAAAGTTATAGAATTAAATGCGTATGCAAACATTTTCTACTTGCTACAAAATTTAATGCTAATTGTGGATAGCTTCCAAAAGTACAACCTCTCCTTGACACCCAAACAATGCATTGGATGTTGTCTTTCTTCTAAATGTTTGCTCGCCGCTCTTTTCCATGAAGTGGCAAATGAATGCAGAAAAATATTCTACTTTGTGTTAGGCAAAGACATTGGAAAGAGTTTTAGGAGTCTTGTGGTATTAATGGCAACTATTTATGATGATATTGGAAGTATATTAGTCATTAGTTTTTAAGAGGATTGTCAATGAATGGTTACGCTTTAAAGAAAGACTAAAATAAGAGCTTAGATTGGTACAAGTAAAGAAACAGTCCTCCTAACTTAAGATTTAATGACCAAGATTTCACTCAGAGAAAAAAAATAAGAAATGGGCCCTTAGGTGGCAGTGAGCTTCAGCTTTTAACTCCGTGAATGTTGAAGTGTTGCACATTTTTTAATTGACAGATTGGTAGATTAATGAGTTTTCTGAAAAGATATTTATTCCATAAACTATGTTTCTGATTGCAGTATTCTTAGTTGGCTTGAATCTTACTTGTCAGGATTTTATATATGCTCCTGTGTCTGTGTTATAAAACTAACATTCTAAATGTTCCTATAGAAATTCAAATCTTCTCCTAATCACAGTATGAATGTTAGTACAACGTTTACATTTTCAATGTGCAACCCTTTCATAGTTTCGTTTTATATGTGTAAGTGTTGAGATGATCTGACTAAAAAGTTTTAAAGATGAATTGTTGTTCTTTTTTACTAAAACTTGCAGAATTCTATTATAGGTTGTTGCTTCAAGAATTATTTGGTGAAACATACTATGAGGCTACGTGAAGTATTTAACACTCGTAAAGAAGTAATTATTGAGGGTTAG

mRNA sequence

ATGGGAATTGTTGGCATAACTATTGTTGCCAATTCCTCCCCTCATCTTCTGACCGTCGACCAACGTCCTTCAAACAGTCTTATTAGACGAAAACGAAAAGCTACCGGAATAAATGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGTTCAATGATTTTGGTACTAATAGAGGACCGACAGCCAATGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAGCTTATGAAGGAAATGATTATTCAGAATTCTATTATAGGTTGTTGCTTCAAGAATTATTTGGTGAAACATACTATGAGGCTACGTGAAGTATTTAACACTCGTAAAGAAGTAATTATTGAGGGTTAG

Coding sequence (CDS)

ATGGGAATTGTTGGCATAACTATTGTTGCCAATTCCTCCCCTCATCTTCTGACCGTCGACCAACGTCCTTCAAACAGTCTTATTAGACGAAAACGAAAAGCTACCGGAATAAATGAGAAGCGGTCGCTTGATGAAAGCGAAAAGGGTGGTCCTAAACAAAAAGAAAGAATTTCAATGGCAAAGGGTTGTTCTTTTTCTAAGAATAGGTGCAATGAGTTCAATGATTTTGGTACTAATAGAGGACCGACAGCCAATGCAATGGAAGAATTGAAGCTTATAGGGAACTATCTGAAAGGTTCCCGTCCAATTTTGACATTTTCATCGAATTTTGATAAAGATGTCCTCTGGAAGCTTATGAAGGAAATGATTATTCAGAATTCTATTATAGGTTGTTGCTTCAAGAATTATTTGGTGAAACATACTATGAGGCTACGTGAAGTATTTAACACTCGTAAAGAAGTAATTATTGAGGGTTAG

Protein sequence

MGIVGITIVANSSPHLLTVDQRPSNSLIRRKRKATGINEKRSLDESEKGGPKQKERISMAKGCSFSKNRCNEFNDFGTNRGPTANAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQNSIIGCCFKNYLVKHTMRLREVFNTRKEVIIEG
Homology
[Close]
BLAST of MELO3C030248.2 vs. NCBI nr
Match: XP_008460241.1 (PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo] >XP_008460242.1 PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo])

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-22
Identity = 63/99 (63.64%), Postives = 67/99 (67.68%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQN------------------ 144
           +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ                   
Sbjct: 2   SAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS 61

Query: 145 --------SIIGCCFKNYLVKHTMRLREVFNTRKEVIIE 158
                     + CCFKNYLVK T RLREVFNTRKEVIIE
Sbjct: 62  MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIE 100

[Close]
BLAST of MELO3C030248.2 vs. NCBI nr
Match: XP_008456708.1 (PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 3.9e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           +AMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Sbjct: 30  SAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 70

[Close]
BLAST of MELO3C030248.2 vs. NCBI nr
Match: XP_008450669.1 (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450671.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 2.4e-10
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ
Sbjct: 143 HTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQ 183

[Close]
BLAST of MELO3C030248.2 vs. NCBI nr
Match: XP_022159792.1 (ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 3.1e-10
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMI+Q
Sbjct: 143 HTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIVQ 183

[Close]
BLAST of MELO3C030248.2 vs. NCBI nr
Match: XP_019149710.1 (PREDICTED: ribosome biogenesis protein BRX1-like [Ipomoea nil] >XP_019149711.1 PREDICTED: ribosome biogenesis protein BRX1-like [Ipomoea nil])

HSP 1 Score: 72.8 bits (177), Expect = 1.2e-09
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRPILTFSSNFDKD  WKL+KEMI+Q
Sbjct: 140 HTMEELKLTGNHLKGSRPILTFSSNFDKDPYWKLLKEMILQ 180

[Close]
BLAST of MELO3C030248.2 vs. TAIR10
Match: AT1G52930.1 (Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.2e-13
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           +AMEE+KL GN+LKGSRP+LTFSSNFDKD  WKL+KEM+ Q
Sbjct: 145 HAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQ 185

[Close]
BLAST of MELO3C030248.2 vs. TAIR10
Match: AT3G15460.1 (Ribosomal RNA processing Brix domain protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRP+LTFSSNF+ D  WKL+KEM+ Q
Sbjct: 141 HTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQ 181

[Close]
BLAST of MELO3C030248.2 vs. Swiss-Prot
Match: sp|Q9C928|BRX12_ARATH (Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-2 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           +AMEE+KL GN+LKGSRP+LTFSSNFDKD  WKL+KEM+ Q
Sbjct: 145 HAMEEMKLTGNHLKGSRPLLTFSSNFDKDAHWKLLKEMLTQ 185

[Close]
BLAST of MELO3C030248.2 vs. Swiss-Prot
Match: sp|Q9LE16|BRX11_ARATH (Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-1 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.8e-10
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRP+LTFSSNF+ D  WKL+KEM+ Q
Sbjct: 141 HTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQ 181

[Close]
BLAST of MELO3C030248.2 vs. Swiss-Prot
Match: sp|Q9VZE6|BRX1_DROME (Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster OX=7227 GN=CG11583 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-04
Identity = 21/41 (51.22%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + M ELK+ GN L+GSRP+L+F S FD+    KL+KE+ +Q
Sbjct: 139 HTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELFVQ 179

[Close]
BLAST of MELO3C030248.2 vs. Swiss-Prot
Match: sp|Q54JN0|BRX1_DICDI (Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum OX=44689 GN=bxdc2 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 24/55 (43.64%), Postives = 34/55 (61.82%), Query Frame = 0 

Query: 78  TNRGPT-------ANAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           T  GPT        + ++EL++ GN LKGSRP L F  +FD +V  +L+KE+I Q
Sbjct: 148 TPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVHLQLIKELITQ 202

[Close]
BLAST of MELO3C030248.2 vs. Swiss-Prot
Match: sp|Q8UVY2|BRX1_XENLA (Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.0e-04
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + + ELK+ GN LKGSRPIL+F   FD++  + L+KE++ Q
Sbjct: 140 HTLAELKMSGNCLKGSRPILSFDPAFDREPQYALLKELLTQ 180

[Close]
BLAST of MELO3C030248.2 vs. TrEMBL
Match: tr|A0A1S3CC56|A0A1S3CC56_CUCME (ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103499121 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 63/99 (63.64%), Postives = 67/99 (67.68%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQN------------------ 144
           +A+EELKLIGNYLKGSRPILTFSSNFDKDVLWKL+KEMIIQ                   
Sbjct: 2   SAIEELKLIGNYLKGSRPILTFSSNFDKDVLWKLLKEMIIQKFTSSPNHSMKVSTTFTFS 61

Query: 145 --------SIIGCCFKNYLVKHTMRLREVFNTRKEVIIE 158
                     + CCFKNYLVK T RLREVFNTRKEVIIE
Sbjct: 62  MCNPFIVLFYMCCCFKNYLVKRTTRLREVFNTRKEVIIE 100

[Close]
BLAST of MELO3C030248.2 vs. TrEMBL
Match: tr|A0A1S3C4K0|A0A1S3C4K0_CUCME (ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103496572 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           +AMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ
Sbjct: 30  SAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 70

[Close]
BLAST of MELO3C030248.2 vs. TrEMBL
Match: tr|A0A1S3BQS3|A0A1S3BQS3_CUCME (ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-10
Identity = 35/41 (85.37%), Postives = 38/41 (92.68%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRPILTFSSNFDKDV WKL+KEMIIQ
Sbjct: 143 HTMEELKLTGNHLKGSRPILTFSSNFDKDVHWKLLKEMIIQ 183

[Close]
BLAST of MELO3C030248.2 vs. TrEMBL
Match: tr|A0A2N9IE83|A0A2N9IE83_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52038 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRPILTFS+NFDKD  WKL+KEMIIQ
Sbjct: 141 HTMEELKLTGNHLKGSRPILTFSNNFDKDAHWKLLKEMIIQ 181

[Close]
BLAST of MELO3C030248.2 vs. TrEMBL
Match: tr|A0A1S4DAU9|A0A1S4DAU9_TOBAC (ribosome biogenesis protein BRX1 homolog OS=Nicotiana tabacum OX=4097 GN=LOC107827671 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.0e-09
Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 85  NAMEELKLIGNYLKGSRPILTFSSNFDKDVLWKLMKEMIIQ 126
           + MEELKL GN+LKGSRPILTFSSNFDKD  WKL+KEM+IQ
Sbjct: 142 HTMEELKLTGNHLKGSRPILTFSSNFDKDPHWKLLKEMVIQ 182

The following BLAST results are available for this feature:
BLAST of MELO3C030248.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460241.11.6e-2263.64PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo] >XP_008460242... [more]
XP_008456708.13.9e-1397.56PREDICTED: ribosome biogenesis protein BRX1 homolog [Cucumis melo][more]
XP_008450669.12.4e-1085.37PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 ... [more]
XP_022159792.13.1e-1082.93ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia][more]
XP_019149710.11.2e-0980.49PREDICTED: ribosome biogenesis protein BRX1-like [Ipomoea nil] >XP_019149711.1 P... [more]
BLAST of MELO3C030248.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G52930.18.2e-1375.61Ribosomal RNA processing Brix domain protein[more]
AT3G15460.11.5e-1170.73Ribosomal RNA processing Brix domain protein[more]
BLAST of MELO3C030248.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9C928|BRX12_ARATH1.5e-1175.61Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BR... [more]
sp|Q9LE16|BRX11_ARATH2.8e-1070.73Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BR... [more]
sp|Q9VZE6|BRX1_DROME1.7e-0451.22Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster OX=7227 GN=C... [more]
sp|Q54JN0|BRX1_DICDI3.0e-0443.64Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium discoideum OX=44689 GN... [more]
sp|Q8UVY2|BRX1_XENLA3.0e-0448.78Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis OX=8355 GN=brix1 PE=2... [more]
BLAST of MELO3C030248.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CC56|A0A1S3CC56_CUCME1.1e-2263.64ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103499121... [more]
tr|A0A1S3C4K0|A0A1S3C4K0_CUCME2.6e-1397.56ribosome biogenesis protein BRX1 homolog OS=Cucumis melo OX=3656 GN=LOC103496572... [more]
tr|A0A1S3BQS3|A0A1S3BQS3_CUCME1.6e-1085.37ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE... [more]
tr|A0A2N9IE83|A0A2N9IE83_FAGSY1.0e-0980.49Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52038 PE=4 SV=1[more]
tr|A0A1S4DAU9|A0A1S4DAU9_TOBAC1.0e-0980.49ribosome biogenesis protein BRX1 homolog OS=Nicotiana tabacum OX=4097 GN=LOC1078... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR026532BRX1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006364 rRNA processing
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030248.2.1MELO3C030248.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..55
IPR026532Ribosome biogenesis protein BRX1PANTHERPTHR13634RIBOSOME BIOGENESIS PROTEIN BRIXcoord: 86..126

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030248.2Cucumber (Chinese Long) v3cucmedB474
MELO3C030248.2Watermelon (97103) v2medwmbB299
MELO3C030248.2Wax gourdmedwgoB325
MELO3C030248.2Cucumber (Gy14) v2cgybmedB414
MELO3C030248.2Cucumber (Gy14) v1cgymedB589
MELO3C030248.2Cucurbita maxima (Rimu)cmamedB311
MELO3C030248.2Cucurbita maxima (Rimu)cmamedB757
MELO3C030248.2Cucurbita moschata (Rifu)cmomedB297
MELO3C030248.2Cucurbita moschata (Rifu)cmomedB754
MELO3C030248.2Cucurbita pepo (Zucchini)cpemedB196
MELO3C030248.2Cucurbita pepo (Zucchini)cpemedB460
MELO3C030248.2Wild cucumber (PI 183967)cpimedB465
MELO3C030248.2Cucumber (Chinese Long) v2cumedB456
MELO3C030248.2Bottle gourd (USVL1VR-Ls)lsimedB491
MELO3C030248.2Watermelon (Charleston Gray)medwcgB298
MELO3C030248.2Watermelon (97103) v1medwmB305
MELO3C030248.2Silver-seed gourdcarmedB0065
MELO3C030248.2Silver-seed gourdcarmedB0834