MELO3C030012.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030012.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionprotein FAR1-RELATED SEQUENCE 5-like
Locationchr03 : 19175461 .. 19176435 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTGAATATAGGTTCTTCTTCTTTTTTTTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTTTGATTTGAAGGAAAAAAGTTTATTTGGAAGTAAATGAGTGCTTTCAAAGTATTTTTACATAATAGCAATGAAGAACAACTTTCAATTTAGGACAACAATATCAAATTTGAGGTCTCTTGAATTTAGATGTCTGCAAGAAGACTGTAAAATGGTATGTTAGGGCATTTCATTATAGAAGAGTGATTTGTGGATGCTACGAAAATACATTTTTGACCATGATTGTTCATTAGTACTGCCCAAAGTTCTCACATCCAAGCTTCTTCAACGGTGATTGGTAGTTATTTGATAGATGATTTAGGTTCATGTCTATTAATCATTCCATTCCAAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAAAAAGTTTGGAGGGCAAAAAAACATATAGTAAAGATATTAAAAGGTGACACAGTTGAATCGTATGCATTGATTCTAAGCTTTTTTGGTAAATTGTTGAATTTAACCCAGGTATGATCAGTTTTACATACCAAATTTAAACTCATTTGCAGATAGATATGGATACACTAATATCACAGTCTATCTAGATAGACAAATATTAGCATCTATCACATTCTTTCTGTTAATTTTTGTTTATGCTGATAGAAATTGTTTTATAATTATTATAGGTACATGCACTTCTTTAGAAATGGATGATAGCGGTCATTTCAAGTTTTTCTTTATGACTTTTAGTGCATCAATTGAGGGGTGAAATATTGTAGACCTATTATTTCTATTGATGGGACATTTTAGAAGTGTAAGCTTGGTGGCTTCCTATTAATAGCCTCATCATAAGATGGTAACAATCAATTTTTCCCTCTTGCTTTTGCCATTGTAGATTATGAAAATGATGTATTATGAACATGGCTTTTAGAGAAGATACGA

mRNA sequence

ATGTCATTGAATATAGGTTCTTCTTCTTTTTTTTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTTTGATTTGAAGGAAAAAAGTTTATTTGGAAGTAAATGAGTGCTTTCAAAGTATTTTTACATAATAGCAATGAAGAACAACTTTCAATTTAGGACAACAATATCAAATTTGAGGTCTCTTGAATTTAGATGTCTGCAAGAAGACTGTAAAATGGTATGTTAGGGCATTTCATTATAGAAGAGTGATTTGTGGATGCTACGAAAATACATTTTTGACCATGATTGTTCATTAGTACTGCCCAAAGTTCTCACATGTTCATGTCTATTAATCATTCCATTCCAAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAAAAAGTTTGGAGGGCAAAAAAACATATAGTAAAGATATTAAAAGGTGACACAGTTGAATCGTATGCATTGATTCTAAGCTTTTTTGGTAAATTGTTGAATTTAACCCAGGTACATGCACTTCTTTAGAAATGGATGATAGCGGTCATTTCAAGTTTTTCTTTATGACTTTTAGTGCATCAATTGAGGGGTGAAATATTGTAGACCTATTATTTCTATTGATGGGACATTTTAGAAGTGTAAGCTTGGTGGCTTCCTATTAATAGCCTCATCATAAGATGGTAACAATCAATTTTTCCCTCTTGCTTTTGCCATTGTAGATTATGAAAATGATGTATTATGAACATGGCTTTTAGAGAAGATACGA

Coding sequence (CDS)

ATGTTCATGTCTATTAATCATTCCATTCCAAAAGAGATTGTGCATAAGGCTCGTACAAATCTTGGAGTTAATATAAGTTACCAAAAAGTTTGGAGGGCAAAAAAACATATAGTAAAGATATTAAAAGGTGACACAGTTGAATCGTATGCATTGATTCTAAGCTTTTTTGGTAAATTGTTGAATTTAACCCAGGTACATGCACTTCTTTAG

Protein sequence

MFMSINHSIPKEIVHKARTNLGVNISYQKVWRAKKHIVKILKGDTVESYALILSFFGKLLNLTQVHALL
Homology
[Close]
BLAST of MELO3C030012.2 vs. NCBI nr
Match: XP_022156574.1 (uncharacterized protein LOC111023450 [Momordica charantia])

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-08
Identity = 32/58 (55.17%), Postives = 39/58 (67.24%), Query Frame = 0 

Query: 2  FMSINHSIPKEIVHKARTNLGVNISYQKVWRAKKHIVKILKGDTVESYALILSFFGKL 60
          F S + S PK+I+H  RTN GV +SY K WRAK  + K+L GD  +SYALI  FF KL
Sbjct: 26 FSSSDRSTPKDIIHHMRTNYGVGVSYYKAWRAKTTVNKLLTGDADDSYALIPKFFVKL 83

[Close]
BLAST of MELO3C030012.2 vs. NCBI nr
Match: XP_022155934.1 (uncharacterized protein LOC111022933 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 33/61 (54.10%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 2  FMSINHSIPKEIVHKARTNLGVNISYQKVWRAKKHIVKILKGDTVESYALILSFFGKLLN 61
          F S + S PK I+H  RTN GV ISY K WRAK  + K+L GD  +SYALI   F KL  
Sbjct: 7  FSSSDRSTPKVIIHHMRTNYGVAISYYKAWRAKTTVNKLLTGDADDSYALIPKIFVKLKE 66

Query: 62 L 63
          L
Sbjct: 67 L 67

[Close]
BLAST of MELO3C030012.2 vs. NCBI nr
Match: XP_008338531.1 (PREDICTED: uncharacterized protein LOC103401593 [Malus domestica])

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-04
Identity = 22/50 (44.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 10  PKEIVHKARTNLGVNISYQKVWRAKKHIVKILKGDTVESYALILSFFGKL 60
           P++I+     ++GV+ISY K WRAK+H ++ ++G   ESYAL+ S+F  L
Sbjct: 249 PRDIIEDMXKDMGVSISYVKAWRAKEHAMEXVRGSXEESYALLPSYFAVL 298

The following BLAST results are available for this feature:
BLAST of MELO3C030012.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156574.13.7e-0855.17uncharacterized protein LOC111023450 [Momordica charantia][more]
XP_022155934.15.4e-0754.10uncharacterized protein LOC111022933 [Momordica charantia][more]
XP_008338531.17.2e-0444.00PREDICTED: uncharacterized protein LOC103401593 [Malus domestica][more]
BLAST of MELO3C030012.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C030012.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C030012.2 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030012.2.1MELO3C030012.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030012.2Cucumber (Gy14) v2cgybmedB413
MELO3C030012.2Cucumber (Gy14) v1cgymedB588
MELO3C030012.2Cucurbita maxima (Rimu)cmamedB029
MELO3C030012.2Cucurbita maxima (Rimu)cmamedB472
MELO3C030012.2Cucurbita moschata (Rifu)cmomedB017
MELO3C030012.2Cucurbita moschata (Rifu)cmomedB462
MELO3C030012.2Cucurbita pepo (Zucchini)cpemedB606
MELO3C030012.2Cucurbita pepo (Zucchini)cpemedB856
MELO3C030012.2Wild cucumber (PI 183967)cpimedB464
MELO3C030012.2Cucumber (Chinese Long) v2cumedB455
MELO3C030012.2Bottle gourd (USVL1VR-Ls)lsimedB495
MELO3C030012.2Watermelon (Charleston Gray)medwcgB297
MELO3C030012.2Watermelon (97103) v1medwmB299
MELO3C030012.2Watermelon (97103) v1medwmB307
MELO3C030012.2Silver-seed gourdcarmedB0690
MELO3C030012.2Cucumber (Chinese Long) v3cucmedB473
MELO3C030012.2Watermelon (97103) v2medwmbB298
MELO3C030012.2Wax gourdmedwgoB328