MELO3C029979.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029979.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionCytochrome b
Locationchr03 : 16378327 .. 16378470 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTTTGGGGAGCAACTGTAATTACAAGCTTAGCTAGCGCCATACCCGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTGCATCATTTACAA

mRNA sequence

ATGAGCTTTTGGGGAGCAACTGTAATTACAAGCTTAGCTAGCGCCATACCCGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTGCATCATTTACAA

Coding sequence (CDS)

ATGAGCTTTTGGGGAGCAACTGTAATTACAAGCTTAGCTAGCGCCATACCCGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCCACCTTAAATCGTTTTTTTAGTCTGCATCATTTACAA

Protein sequence

MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHLQ
Homology
[Close]
BLAST of MELO3C029979.2 vs. NCBI nr
Match: CAA30135.1 (unnamed protein product (mitochondrion) [Oenothera sp.])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 146 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 192

[Close]
BLAST of MELO3C029979.2 vs. NCBI nr
Match: YP_514668.1 (apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >YP_003433874.1 apocytochrome b (mitochondrion) [Oryza rufipogon] >YP_009242027.1 apocytochrome b (mitochondrion) [Oryza minuta] >CAA37747.1 apocytochrome b (mitochondrion) [Oryza sativa Japonica Group] >AAZ99245.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >AAZ99299.1 apocytochrome b (mitochondrion) [Oryza sativa Japonica Group] >AAZ99352.1 apocytochrome b (mitochondrion) [Oryza sativa Japonica Group] >BAI67978.1 apocytochrome b (mitochondrion) [Oryza rufipogon] >BAI68033.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >AER12985.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >AER13053.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >AEZ03723.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >AEZ03781.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >AMA06737.1 apocytochrome b (mitochondrion) [Oryza minuta] >BAV53229.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >ATA66810.1 apocytochrome b (mitochondrion) [Oryza sativa Indica Group])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. NCBI nr
Match: AAD03041.1 (apocytochrome b, partial (mitochondrion) [Solanum tuberosum])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. NCBI nr
Match: CAA34910.1 (unnamed protein product (mitochondrion) [Oryza sativa Indica Group])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. NCBI nr
Match: CAA41343.1 (apocytochrome b (mitochondrion) [Solanum tuberosum])

HSP 1 Score: 100.5 bits (249), Expect = 1.6e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. TAIR10
Match: AT2G07727.1 (Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal)

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. TAIR10
Match: ATMG00220.1 (apocytochrome b)

HSP 1 Score: 100.5 bits (249), Expect = 2.9e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. TAIR10
Match: ATCG00720.1 (photosynthetic electron transfer B)

HSP 1 Score: 45.1 bits (105), Expect = 1.5e-05
Identity = 19/45 (42.22%), Postives = 28/45 (62.22%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH 46
           + +W   ++T +  AIPV+G  +V  L G  SV  +TL RF+SLH
Sbjct: 143 IGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLH 187

[Close]
BLAST of MELO3C029979.2 vs. Swiss-Prot
Match: sp|P04165|CYB_MAIZE (Cytochrome b OS=Zea mays OX=4577 GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 5.3e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. Swiss-Prot
Match: sp|Q9ZZT8|CYB_PEA (Cytochrome b OS=Pisum sativum OX=3888 GN=MT-CYB PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.3e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. Swiss-Prot
Match: sp|P05718|CYB_VICFA (Cytochrome b OS=Vicia faba OX=3906 GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 5.3e-21
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. Swiss-Prot
Match: sp|P42792|CYB_ARATH (Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=2 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH+L
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHYL 191

[Close]
BLAST of MELO3C029979.2 vs. Swiss-Prot
Match: sp|P26852|CYB_MARPO (Cytochrome b OS=Marchantia polymorpha OX=3197 GN=MT-CYB PE=3 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 2.6e-20
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH+L
Sbjct: 142 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHYL 188

[Close]
BLAST of MELO3C029979.2 vs. TrEMBL
Match: tr|A0A2H4V4F9|A0A2H4V4F9_OLEEU (Cytochrome b OS=Olea europaea subsp. europaea OX=158383 GN=cytB PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. TrEMBL
Match: tr|Q95871|Q95871_TOBAC (Cytochrome b OS=Nicotiana tabacum OX=4097 GN=Ntabcob PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. TrEMBL
Match: tr|A0A075W1Y6|A0A075W1Y6_CAPAN (Cytochrome b OS=Capsicum annuum OX=4072 GN=cob PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. TrEMBL
Match: tr|H6D9R5|H6D9R5_9POAL (Cytochrome b OS=Ferrocalamus rimosivaginus OX=591214 GN=cob PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

[Close]
BLAST of MELO3C029979.2 vs. TrEMBL
Match: tr|M0X9J5|M0X9J5_HORVV (Cytochrome b OS=Hordeum vulgare subsp. vulgare OX=112509 GN=cob PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 

Query: 1   MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 48
           MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL
Sbjct: 145 MSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLHHL 191

The following BLAST results are available for this feature:
BLAST of MELO3C029979.2 vs. NCBI nr
Match NameE-valueIdentityDescription
CAA30135.11.6e-18100.00unnamed protein product (mitochondrion) [Oenothera sp.][more]
YP_514668.11.6e-18100.00apocytochrome b (mitochondrion) [Oryza sativa Indica Group] >YP_003433874.1 apoc... [more]
AAD03041.11.6e-18100.00apocytochrome b, partial (mitochondrion) [Solanum tuberosum][more]
CAA34910.11.6e-18100.00unnamed protein product (mitochondrion) [Oryza sativa Indica Group][more]
CAA41343.11.6e-18100.00apocytochrome b (mitochondrion) [Solanum tuberosum][more]
BLAST of MELO3C029979.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G07727.12.9e-22100.00Di-haem cytochrome, transmembrane;Cytochrome b/b6, C-terminal[more]
ATMG00220.12.9e-22100.00apocytochrome b[more]
ATCG00720.11.5e-0542.22photosynthetic electron transfer B[more]
BLAST of MELO3C029979.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P04165|CYB_MAIZE5.3e-21100.00Cytochrome b OS=Zea mays OX=4577 GN=MT-CYB PE=3 SV=2[more]
sp|Q9ZZT8|CYB_PEA5.3e-21100.00Cytochrome b OS=Pisum sativum OX=3888 GN=MT-CYB PE=3 SV=1[more]
sp|P05718|CYB_VICFA5.3e-21100.00Cytochrome b OS=Vicia faba OX=3906 GN=MT-CYB PE=3 SV=2[more]
sp|P42792|CYB_ARATH2.6e-2097.87Cytochrome b OS=Arabidopsis thaliana OX=3702 GN=MT-CYB PE=2 SV=2[more]
sp|P26852|CYB_MARPO2.6e-2097.87Cytochrome b OS=Marchantia polymorpha OX=3197 GN=MT-CYB PE=3 SV=2[more]
BLAST of MELO3C029979.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2H4V4F9|A0A2H4V4F9_OLEEU1.1e-18100.00Cytochrome b OS=Olea europaea subsp. europaea OX=158383 GN=cytB PE=3 SV=1[more]
tr|Q95871|Q95871_TOBAC1.1e-18100.00Cytochrome b OS=Nicotiana tabacum OX=4097 GN=Ntabcob PE=3 SV=1[more]
tr|A0A075W1Y6|A0A075W1Y6_CAPAN1.1e-18100.00Cytochrome b OS=Capsicum annuum OX=4072 GN=cob PE=3 SV=1[more]
tr|H6D9R5|H6D9R5_9POAL1.1e-18100.00Cytochrome b OS=Ferrocalamus rimosivaginus OX=591214 GN=cob PE=3 SV=1[more]
tr|M0X9J5|M0X9J5_HORVV1.1e-18100.00Cytochrome b OS=Hordeum vulgare subsp. vulgare OX=112509 GN=cob PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0009055electron carrier activity
Vocabulary: INTERPRO
TermDefinition
IPR016174Di-haem_cyt_TM
IPR027387Cytb/b6-like_sf
IPR005797Cyt_b/b6_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0070469 respiratory chain
cellular_component GO:0045275 respiratory chain complex III
molecular_function GO:0009055 electron carrier activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029979.2.1MELO3C029979.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 1..47
e-value: 4.8E-21
score: 75.3
IPR005797Cytochrome b/b6, N-terminalPROSITEPS51002CYTB_NTERcoord: 1..48
score: 10.327
IPR027387Cytochrome b/b6-like domain superfamilyGENE3DG3DSA:1.20.810.10coord: 1..47
e-value: 5.9E-19
score: 69.9
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 1..47
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILYSSF81342Transmembrane di-heme cytochromescoord: 1..47

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029979.2Cucumber (Gy14) v2cgybmedB413
MELO3C029979.2Cucumber (Gy14) v1cgymedB588
MELO3C029979.2Cucurbita maxima (Rimu)cmamedB310
MELO3C029979.2Cucurbita maxima (Rimu)cmamedB761
MELO3C029979.2Cucurbita moschata (Rifu)cmomedB296
MELO3C029979.2Cucurbita moschata (Rifu)cmomedB758
MELO3C029979.2Cucurbita pepo (Zucchini)cpemedB203
MELO3C029979.2Wild cucumber (PI 183967)cpimedB464
MELO3C029979.2Cucumber (Chinese Long) v2cumedB455
MELO3C029979.2Bottle gourd (USVL1VR-Ls)lsimedB496
MELO3C029979.2Watermelon (Charleston Gray)medwcgB296
MELO3C029979.2Watermelon (97103) v1medwmB304
MELO3C029979.2Cucumber (Chinese Long) v3cucmedB473
MELO3C029979.2Watermelon (97103) v2medwmbB297
MELO3C029979.2Wax gourdmedwgoB338