MELO3C029928.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029928.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr03 : 11782966 .. 11783208 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGCCCCCATCACCGCACCTCAGCTGATGCCTCATCGTATGCCTCCAATGCTGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGCCATGCTGCAACATCTAACGCCGCCCAAATCCGACTCCAGCCGCCTCCTTCATCTCCACTAGCCCTAATTTGCAAATCCCACAATAACATCCCAATTTGA

mRNA sequence

ATTTTTCCATTCCTTCCAAAGTTAATCACTCCTGCCCCCATCACCGCACCTCAGCTGATGCCTCATCGTATGCCTCCAATGCTGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGCCATGCTGCAACATCTAACGCCGCCCAAATCCGACTCCAGCCGCCTCCTTCATCTCCACTAGCCCTAATTTGCAAATCCCACAATAACATCCCAATTTGA

Coding sequence (CDS)

ATGCCTCATCGTATGCCTCCAATGCTGACTCCAGTCGCAAGCTCAACCAAATCTGACTCCTACTGCTACCGTGATGCTAATTCCAGCCATGCTGCAACATCTAACGCCGCCCAAATCCGACTCCAGCCGCCTCCTTCATCTCCACTAGCCCTAATTTGCAAATCCCACAATAACATCCCAATTTGA

Protein sequence

MPHRMPPMLTPVASSTKSDSYCYRDANSSHAATSNAAQIRLQPPPSSPLALICKSHNNIPI

Homology

[Close]

BLAST of MELO3C029928.2 vs. NCBI nr
Match: XP_008450213.1 (PREDICTED: uncharacterized protein LOC103491874 [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MPHRMPPMLTPVASSTKSDSYCYRDANSSHAATSNAAQ 39
          MPHRMPPM TPVASSTKSDSYCYRDANSS  ATS A Q
Sbjct: 21 MPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 58

[Close]

BLAST of MELO3C029928.2 vs. TrEMBL
Match: tr|A0A1S3BPQ7|A0A1S3BPQ7_CUCME (uncharacterized protein LOC103491874 OS=Cucumis melo OX=3656 GN=LOC103491874 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 33/38 (86.84%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 1  MPHRMPPMLTPVASSTKSDSYCYRDANSSHAATSNAAQ 39
          MPHRMPPM TPVASSTKSDSYCYRDANSS  ATS A Q
Sbjct: 21 MPHRMPPMPTPVASSTKSDSYCYRDANSSRVATSYATQ 58

The following BLAST results are available for this feature:

BLAST of MELO3C029928.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450213.1	3.3e-08	86.84	PREDICTED: uncharacterized protein LOC103491874 [Cucumis melo]	[more]

BLAST of MELO3C029928.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029928.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029928.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPQ7\|A0A1S3BPQ7_CUCME	2.2e-08	86.84	uncharacterized protein LOC103491874 OS=Cucumis melo OX=3656 GN=LOC103491874 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029928.2.1	MELO3C029928.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029928.2	Cucumber (Gy14) v2	cgybmedB413
MELO3C029928.2	Cucumber (Gy14) v1	cgymedB588
MELO3C029928.2	Wild cucumber (PI 183967)	cpimedB464
MELO3C029928.2	Cucumber (Chinese Long) v2	cumedB455
MELO3C029928.2	Cucumber (Chinese Long) v3	cucmedB473
MELO3C029928.2	Wax gourd	medwgoB329