MELO3C029710.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029710.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr02 : 21466929 .. 21467463 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAGAGTAAAATTCAGCAGGCTACTTTGGACAGATTCATATCATACATCTCTGGAAAGAGCAAATTAAAAGAAAACCTAAATTCTCCAATTGAGAAATTAGAATCAGCTAATGCAAAGCCATACGCCGAAACCAATGAGAGCGGTACCAAACAGAGCGTACCCGACACGAGTGTCCTCGCCAAGGAGCACTCCGAAAACAGCAGTGGCAGCAAAAGTAGTGGCGTTGGTGACCGGAACGGCGAGAGATATTGGGGCATCACTCAGAATGGCGAAGAAGGTAGCAGAGGCAGTTAGATTAAGCAAAAAAGGGAGAGTGTACTGCCAAATAGAGAAGAGCTTGAGCCATCGACGGAGAGAGGAAAAGGGTTTGGTTGAATCAGAGGAAGATTGGAGAGCTTGGTCCCAGAGAAGAGCGCCACGGCGCATCAGAGCATTGGTGGCGCCCCAGACGAGACCGATCGCAACCATTTTTTCTACATCTCCGATCATCTTTTTCCCTCTCTGTCTCTGTTCAGTCATTAGTTGTGAATAA

mRNA sequence

TCACAGAGTAAAATTCAGCAGGCTACTTTGGACAGATTCATATCATACATCTCTGGAAAGAGCAAATTAAAAGAAAACCTAAATTCTCCAATTGAGAAATTAGAATCAGCTAATGCAAAGCCATACGCCGAAACCAATGAGAGCGGTACCAAACAGAGCGTACCCGACACGAGTGTCCTCGCCAAGGAGCACTCCGAAAACAGCAGTGGCAGCAAAAGTAGTGGCGTTGGTGACCGGAACGGCGAGAGATATTGGGGCATCACTCAGAATGGCGAAGAAGGTAGCAGAGGCAGTTAGATTAAGCAAAAAAGGGAGAGTGTACTGCCAAATAGAGAAGAGCTTGAGCCATCGACGGAGAGAGGAAAAGGGTTTGGTTGAATCAGAGGAAGATTGGAGAGCTTGGTCCCAGAGAAGAGCGCCACGGCGCATCAGAGCATTGGTGGCGCCCCAGACGAGACCGATCGCAACCATTTTTTCTACATCTCCGATCATCTTTTTCCCTCTCTGTCTCTGTTCAGTCATTAGTTGTGAATAA

Coding sequence (CDS)

ATGCAAAGCCATACGCCGAAACCAATGAGAGCGGTACCAAACAGAGCGTACCCGACACGAGTGTCCTCGCCAAGGAGCACTCCGAAAACAGCAGTGGCAGCAAAAGTAGTGGCGTTGGTGACCGGAACGGCGAGAGATATTGGGGCATCACTCAGAATGGCGAAGAAGGTAGCAGAGGCAGTTAGATTAAGCAAAAAAGGGAGAGTGTACTGCCAAATAGAGAAGAGCTTGAGCCATCGACGGAGAGAGGAAAAGGGTTTGGTTGAATCAGAGGAAGATTGGAGAGCTTGGTCCCAGAGAAGAGCGCCACGGCGCATCAGAGCATTGGTGGCGCCCCAGACGAGACCGATCGCAACCATTTTTTCTACATCTCCGATCATCTTTTTCCCTCTCTGTCTCTGTTCAGTCATTAGTTGTGAATAA

Protein sequence

MQSHTPKPMRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEAVRLSKKGRVYCQIEKSLSHRRREEKGLVESEEDWRAWSQRRAPRRIRALVAPQTRPIATIFSTSPIIFFPLCLCSVISCE

Homology

[Close]

BLAST of MELO3C029710.2 vs. NCBI nr
Match: POE78213.1 (hypothetical protein CFP56_62011 [Quercus suber])

HSP 1 Score: 131.3 bits (329), Expect = 2.5e-27
Identity = 78/124 (62.90%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 9   MRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEAVRLSKKGR 68
           MRAVP +A+  RVSSP+S P TAVAAKVVALVTGT R++G  LR+ KKVAEA R  KKG 
Sbjct: 1   MRAVPKKAWAKRVSSPKSIPNTAVAAKVVALVTGTVREMGVWLRITKKVAEAERFMKKGM 60

Query: 69  VYCQIEKSLSHRRREEKGLVESE---EDWRAWSQRRAPRRIRALVAPQTRPIATIFSTSP 128
            YCQIE+ ++   REE  L   +    D RAWS +RAPRR+ ALVAP TRP ATIFST P
Sbjct: 61  EYCQIERRVNQFLREESNLCCGDGVGVDLRAWSHKRAPRRMMALVAPHTRPTATIFSTFP 120

Query: 129 IIFF 130
           II F
Sbjct: 121 IILF 124

[Close]

BLAST of MELO3C029710.2 vs. NCBI nr
Match: EYU32316.1 (hypothetical protein MIMGU_mgv1a016904mg [Erythranthe guttata])

HSP 1 Score: 97.4 bits (241), Expect = 4.0e-17
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1  MQSHTPKPMRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEA 60
          MQ+ TP+ MR VPN+A PTRVSSPR  PKTAVAA VVA VTGTA+++G S++M KKVA+A
Sbjct: 16 MQTQTPRRMRRVPNKARPTRVSSPRMIPKTAVAANVVAFVTGTAKEMGVSIKMPKKVADA 75

Query: 61 VRLSKKGRVYCQIEKSLSH 80
           R  +KG+VYCQI  S +H
Sbjct: 76 DRFIRKGKVYCQINTSFNH 94

[Close]

BLAST of MELO3C029710.2 vs. NCBI nr
Match: KHN41653.1 (hypothetical protein glysoja_036397 [Glycine soja])

HSP 1 Score: 92.0 bits (227), Expect = 1.7e-15
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 28  PKTAVAAKVVALVTGTARDIGASLRMAKKVAEAVRLSKKGRVYCQIEKSLSHRRREEK-- 87
           PKTAVAAKVVALVTGTAR+ GAS RMAKKVAEA RL +KG  YCQ+E+SL+    E +  
Sbjct: 2   PKTAVAAKVVALVTGTARESGASERMAKKVAEAERLMRKGIEYCQMERSLTQFPTEMRIF 61

Query: 88  -GLVES----EEDWRAWSQRRAPRRIRALVAPQTRPIATIFS 123
              VE      ED+RA SQ  APRR+ ALVAP T P A IFS
Sbjct: 62  WHRVECGCGFAEDFRASSQSSAPRRMIALVAPHTIPTAIIFS 103

[Close]

BLAST of MELO3C029710.2 vs. NCBI nr
Match: KVH93882.1 (hypothetical protein Ccrd_004055 [Cynara cardunculus var. scolymus])

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 9  MRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEAVRLSKKGR 68
          M+ VP R  PTRVSSP + P TAVAA VVALVTGTAR+IG SLR+ KK AEA RL++KG 
Sbjct: 1  MKKVPKRVNPTRVSSPSNIPNTAVAANVVALVTGTAREIGVSLRIEKKAAEADRLTRKGT 60

Query: 69 VYCQIEKSLSHRRR 83
           YCQ ++ L+   R
Sbjct: 61 EYCQTKRRLNQSMR 74

[Close]

BLAST of MELO3C029710.2 vs. NCBI nr
Match: EEF48212.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 43/82 (52.44%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 47  IGASLRMAKKVAEAVRLSKKGRVYCQIEKSLSHRRREEKGL----VESEEDWRAWSQRRA 106
           +GA L+ AKKVAEA RLSKKG  YCQ +  L+    +++ L         +W  WS  RA
Sbjct: 1   MGALLKRAKKVAEAERLSKKGTEYCQNKSRLNMLLSKDRSLFLLSFGDGGEWTFWSHSRA 60

Query: 107 PRRIRALVAPQTRPIATIFSTS 125
           PRRI ALV PQ RP ATIFS S
Sbjct: 61  PRRINALVDPQIRPTATIFSIS 82

[Close]

BLAST of MELO3C029710.2 vs. TrEMBL
Match: tr|A0A2P4JBS7|A0A2P4JBS7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_62011 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.6e-27
Identity = 78/124 (62.90%), Postives = 90/124 (72.58%), Query Frame = 0


Query: 9   MRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEAVRLSKKGR 68
           MRAVP +A+  RVSSP+S P TAVAAKVVALVTGT R++G  LR+ KKVAEA R  KKG 
Sbjct: 1   MRAVPKKAWAKRVSSPKSIPNTAVAAKVVALVTGTVREMGVWLRITKKVAEAERFMKKGM 60

Query: 69  VYCQIEKSLSHRRREEKGLVESE---EDWRAWSQRRAPRRIRALVAPQTRPIATIFSTSP 128
            YCQIE+ ++   REE  L   +    D RAWS +RAPRR+ ALVAP TRP ATIFST P
Sbjct: 61  EYCQIERRVNQFLREESNLCCGDGVGVDLRAWSHKRAPRRMMALVAPHTRPTATIFSTFP 120

Query: 129 IIFF 130
           II F
Sbjct: 121 IILF 124

[Close]

BLAST of MELO3C029710.2 vs. TrEMBL
Match: tr|A0A0E0KZD0|A0A0E0KZD0_ORYPU (Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.1e-22
Identity = 75/141 (53.19%), Postives = 91/141 (64.54%), Query Frame = 0


Query: 1   MQSHTPKPMRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEA 60
           MQ+ TP+ M  VP+ A    V SPR    TAVAAKVVALVTGTA +IGA+ R  KK A+A
Sbjct: 1   MQTQTPRMMSVVPSAAGAACVPSPRRAAATAVAAKVVALVTGTAMEIGAAPRRLKKAADA 60

Query: 61  VRLSKKGRVYCQIEKSLSHRRR----EEKGLVESEEDWRAWSQRRAPRRIRALVAPQTRP 120
            RL+  G  YC + +S +HRR     EE+  VE E + R WSQ  APRRIRALVAP TRP
Sbjct: 61  ERLTANGTEYCHVRRSSTHRRNTPVTEEE--VEVERERRRWSQTSAPRRIRALVAPHTRP 120

Query: 121 IATIFSTSPIIFFPLCLCSVI 138
            AT+ + SP    P+ + SVI
Sbjct: 121 TATMLAASP----PMAMASVI 135

[Close]

BLAST of MELO3C029710.2 vs. TrEMBL
Match: tr|A0A022QWP3|A0A022QWP3_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016904mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.6e-17
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1  MQSHTPKPMRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEA 60
          MQ+ TP+ MR VPN+A PTRVSSPR  PKTAVAA VVA VTGTA+++G S++M KKVA+A
Sbjct: 16 MQTQTPRRMRRVPNKARPTRVSSPRMIPKTAVAANVVAFVTGTAKEMGVSIKMPKKVADA 75

Query: 61 VRLSKKGRVYCQIEKSLSH 80
           R  +KG+VYCQI  S +H
Sbjct: 76 DRFIRKGKVYCQINTSFNH 94

[Close]

BLAST of MELO3C029710.2 vs. TrEMBL
Match: tr|A0A0B2SAA0|A0A0B2SAA0_GLYSO (Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_036397 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.1e-15
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 28  PKTAVAAKVVALVTGTARDIGASLRMAKKVAEAVRLSKKGRVYCQIEKSLSHRRREEK-- 87
           PKTAVAAKVVALVTGTAR+ GAS RMAKKVAEA RL +KG  YCQ+E+SL+    E +  
Sbjct: 2   PKTAVAAKVVALVTGTARESGASERMAKKVAEAERLMRKGIEYCQMERSLTQFPTEMRIF 61

Query: 88  -GLVES----EEDWRAWSQRRAPRRIRALVAPQTRPIATIFS 123
              VE      ED+RA SQ  APRR+ ALVAP T P A IFS
Sbjct: 62  WHRVECGCGFAEDFRASSQSSAPRRMIALVAPHTIPTAIIFS 103

[Close]

BLAST of MELO3C029710.2 vs. TrEMBL
Match: tr|A0A118JVW5|A0A118JVW5_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004055 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.5e-12
Identity = 46/74 (62.16%), Postives = 55/74 (74.32%), Query Frame = 0


Query: 9  MRAVPNRAYPTRVSSPRSTPKTAVAAKVVALVTGTARDIGASLRMAKKVAEAVRLSKKGR 68
          M+ VP R  PTRVSSP + P TAVAA VVALVTGTAR+IG SLR+ KK AEA RL++KG 
Sbjct: 1  MKKVPKRVNPTRVSSPSNIPNTAVAANVVALVTGTAREIGVSLRIEKKAAEADRLTRKGT 60

Query: 69 VYCQIEKSLSHRRR 83
           YCQ ++ L+   R
Sbjct: 61 EYCQTKRRLNQSMR 74

The following BLAST results are available for this feature:

BLAST of MELO3C029710.2 vs. NCBI nr


Match Name	E-value	Identity	Description
POE78213.1	2.5e-27	62.90	hypothetical protein CFP56_62011 [Quercus suber]	[more]
EYU32316.1	4.0e-17	64.56	hypothetical protein MIMGU_mgv1a016904mg [Erythranthe guttata]	[more]
KHN41653.1	1.7e-15	62.75	hypothetical protein glysoja_036397 [Glycine soja]	[more]
KVH93882.1	2.3e-12	62.16	hypothetical protein Ccrd_004055 [Cynara cardunculus var. scolymus]	[more]
EEF48212.1	1.5e-08	52.44	conserved hypothetical protein [Ricinus communis]	[more]

BLAST of MELO3C029710.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029710.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029710.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4JBS7\|A0A2P4JBS7_QUESU	1.6e-27	62.90	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_62011 PE=4 SV=1	[more]
tr\|A0A0E0KZD0\|A0A0E0KZD0_ORYPU	6.1e-22	53.19	Uncharacterized protein OS=Oryza punctata OX=4537 PE=4 SV=1	[more]
tr\|A0A022QWP3\|A0A022QWP3_ERYGU	2.6e-17	64.56	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a016904mg PE...	[more]
tr\|A0A0B2SAA0\|A0A0B2SAA0_GLYSO	1.1e-15	62.75	Uncharacterized protein OS=Glycine soja OX=3848 GN=glysoja_036397 PE=4 SV=1	[more]
tr\|A0A118JVW5\|A0A118JVW5_CYNCS	1.5e-12	62.16	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_004...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029710.2.1	MELO3C029710.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029710.2	Cucurbita pepo (Zucchini)	cpemedB737
MELO3C029710.2	Bottle gourd (USVL1VR-Ls)	lsimedB427
MELO3C029710.2	Watermelon (Charleston Gray)	medwcgB248
MELO3C029710.2	Watermelon (97103) v1	medwmB285
MELO3C029710.2	Silver-seed gourd	carmedB0038
MELO3C029710.2	Silver-seed gourd	carmedB0136
MELO3C029710.2	Watermelon (97103) v2	medwmbB249
MELO3C029710.2	Wax gourd	medwgoB313
MELO3C029710.2	Cucumber (Gy14) v2	cgybmedB338
MELO3C029710.2	Cucurbita maxima (Rimu)	cmamedB063
MELO3C029710.2	Cucurbita maxima (Rimu)	cmamedB120
MELO3C029710.2	Cucurbita moschata (Rifu)	cmomedB055
MELO3C029710.2	Cucurbita moschata (Rifu)	cmomedB108
MELO3C029710.2	Cucurbita pepo (Zucchini)	cpemedB395