MELO3C029673.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029673.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr02 : 18647106 .. 18649351 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTATTTCTCCACACGCCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCATCCGCTGTCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCTAGGGCGACCTCCAAGTAATTAAATGCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGCAGCGATTGTTTGTGCTTGATTTCAATGATCAAACAATGAACAGGTTTGTTGAGCATCAGATGCTCACAACCTTTAAAGAGTTCCAGGCCGACTGTCATAGACATTTCAAAAAGTACAGCGACTCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGGCACTTCCTCTGCAACCATTATATCAGTCGTGCATTCCAGGTATTTGTCATGATTAATTATGATAACAAGTTTTTATATGTATAAGAAATAAACAATATAATTGTTTTAATGCAGGAGCAATCACGGACAAACAAGGTTGCTAGACAGAAGCAGCCTTACAATCATAGTAGTGGGTCCAAGTCGTTTCTACAATGACAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTCCGGGAAACACACGTTCGAGCTGGGACATTCGTGTCACAGGCCGCCGAGGATGCGTATGTAAGTTATACCCTTATTAATTATCCACTTTTATTATATATTTTTGCGCGTTACCTAACATAATTTTTAAATTTGTTGCAGAATCAAATGCTGGAACTCCAATCCCAGCCTACCCCATAGGNNNNNNNNNNNNNNNNNNNNAGCCTTGTTGTGGACGATTAATGACTTCCCGGTGTATGGTGACCTATCAGGGTGGAGTACGAAGGGGTATCAGACATGTCCTATATGCATGAGTGATAGATCGTCCTTCGGGATACGAGGTAGAATATCTTTCATGGGACATAGACGCTATCTTCCACAGAATCACGTGTGGCGTAGAAGTAGGCTACACGATGGAAAGGTAGAGCGTAAGGCTCCTCCTGTGGTGATGAATGGGCATGAAATATTAGAACAACTAGATCAGTTGGAATTTCCAGTTATGAGTAAACATCCTTCAATACATGATAAGAAAAGAAAGAGAGCTCTTAATTGGACGAAGAAAAGTATTTTTTTCAATCTTCCTTATTGGTTGAGACTTTTGTTACGTCACAAACTTGATGTAATGCACATTGAGAAGAATGTTTGTGACAATTTGATTGGTACGTTATTGAACATCGAAGGGAAAACGAAGGATACCACGAATGCTAGGTTGGACTTACAAGATCTGAAGATAAGAAAGGATTTACATCTTGTAGAAGTGGGTAACCGATTGGTGAAGCCACATGCGAGCTACACGTTGACTACCAGTGAACGAGTAGAGTTTTGTAAGTTTCTGAAATCAGTTAAGTTTTCCGATGGATTTGTTTCCAATATATCGAGATGTGTGCATGAAAGAGGGGAAAATATCAGGACTAAAAACGCATGATTGTCATGTTTTATTACATCGACTGCTACCAATTGGTATTCGAGCATTCTTACCGAAGAACGTATACACTGCTATAACCGAATTATGTAATTTTTTCCGTGACTTGTGCGCCCGAACGATAAGAGTAAGTGATCTAGACAGATTGCAAGCAGATATCATAATCATACTTTGTAAGTTGGAAAGAATATTTCCACCTGCCTTTTTTAGCGTTATGGTGCACCTTGCCGTTCACTTACCATATGAAACGAAGATTACTGGTCCGGTTTCTTATAGTTGGATGTATCCGATTGAAAGGAGTCTACGAACGTTAAAGCAGTATGTTAGAAACAAAGCAGGTCCTGAGGGGTCAATTGCAGAAGGCTATGTCATGAATGAATCTAGTACCTTTTATTCACGTTACCTACGTGGTATAGAGACTCAATTCACAAGAGATGAGCGAAATGATGATACCATTGTAGAGAACGAGGTAATTGGTGACTTTGAAATTTTCAAGCAGAAAGTACGACCCTTAGGTGAATCAAGTGTTCGTGCTATATCAGAGGAAGAGAAACGACTCTTCCATTGGTACATACTGAATAATGCTGACGAAATAACAGAGTATCGCAAGTAAGCATATTCATCATCTTTGTAATTTTTAAATATTTGTTATATATTGTTCTTACAGAAATTAAACTCATCTCTATTAGGAAACATTTGA

mRNA sequence

CCTATTTCTCCACACGCCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCGTGCGAAAGACATTTCCCATCCGCTGTCTTAAGTGGGCGGACGTTGGGAGAGAATACATTGAGGTCGTCTAGGGCGACCTCCAAGTAATTAAATGCACTACACATTTATATATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGCAGCGATTGTTTGTGCTTGATTTCAATGATCAAACAATGAACAGGTTTGTTGAGCATCAGATGCTCACAACCTTTAAAGAGTTCCAGGCCGACTGTCATAGACATTTCAAAAAGTACAGCGACTCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGGCACTTCCTCTGCAACCATTATATCAGTCGTGCATTCCAGGAGCAATCACGGACAAACAAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTCCGGGAAACACACGTTCGAGCTGGGACATTCGTGTCACAGGCCGCCGAGGATGCGTATAAATTAAACTCATCTCTATTAGGAAACATTTGA

Coding sequence (CDS)

ATGATTTCATTTGAAACATATCTAACTTTAACCAATCTAATGTGTTATGTTTGTAATGTGCAGCGATTGTTTGTGCTTGATTTCAATGATCAAACAATGAACAGGTTTGTTGAGCATCAGATGCTCACAACCTTTAAAGAGTTCCAGGCCGACTGTCATAGACATTTCAAAAAGTACAGCGACTCGGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTGATGAGGATTGGCACTTCCTCTGCAACCATTATATCAGTCGTGCATTCCAGGAGCAATCACGGACAAACAAGTATGAGCTCGCTGAAAGAAGAGGGCAGCCGGTCGATCGTGTGGAATTGTTCCGGGAAACACACGTTCGAGCTGGGACATTCGTGTCACAGGCCGCCGAGGATGCGTATAAATTAAACTCATCTCTATTAGGAAACATTTGA

Protein sequence

MISFETYLTLTNLMCYVCNVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDEDWHFLCNHYISRAFQEQSRTNKYELAERRGQPVDRVELFRETHVRAGTFVSQAAEDAYKLNSSLLGNI

Homology

[Close]

BLAST of MELO3C029673.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 203.0 bits (515), Expect = 7.0e-49
Identity = 102/139 (73.38%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           ++QR FVLDFNDQ MNRFVEHQM+TTFKEFQ DCHRHFKKYSD EEARANPPNALVGRDE
Sbjct: 112 DLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDE 171

Query: 79  DWHFLCNHYISRAFQEQSRTNK---------------------YELAERRGQPVDRVELF 137
           DWHFL +HYI RAFQEQS TNK                     YELAER+G+PVD VELF
Sbjct: 172 DWHFLYDHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELF 231

[Close]

BLAST of MELO3C029673.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 2.5e-22
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 1   MISFETYLTLTNLMCYVCNVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYS 60
           ++  E Y+T    +  V    + FVLDF+DQ MN  VE+QM  TFKEF  DCH+ FKKYS
Sbjct: 107 LLELECYVTGREYIEVVKADLQFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYS 166

Query: 61  DSEEARANPPNALVGRDEDWHFLCNHYISRAFQ 94
           D EEARANPPN LVGR+EDWHFL +HY+S AFQ
Sbjct: 167 DPEEARANPPNLLVGRNEDWHFLYDHYMSHAFQ 199

[Close]

BLAST of MELO3C029673.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 9.3e-17
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           N+QR FVLDFNDQ +NRFVEHQMLTTFKEF  DCHRHFK      EARANPPN LVGR E
Sbjct: 121 NLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHE 175

Query: 79  D 80
           D
Sbjct: 181 D 175

[Close]

BLAST of MELO3C029673.2 vs. NCBI nr
Match: XP_022156286.1 (uncharacterized protein LOC111023212 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 2.9e-10
Identity = 44/145 (30.34%), Postives = 77/145 (53.10%), Query Frame = 0


Query: 21  QRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDEDW 80
           Q  F +D + + +N+F+E QM  +FK++++D H+++ ++ D  EARANPP  L    EDW
Sbjct: 18  QEHFRVDLSKRVVNKFIEQQMQISFKQYRSDLHQYYCEFEDPVEARANPPERLT-NPEDW 77

Query: 81  HFLCNHYISRAFQEQSRTNK---------------------YELAERRGQPVDRVELFRE 140
           + LC+ + +  ++E ++ NK                     +EL  + G  +  V+LF E
Sbjct: 78  NHLCDRWETPEWKEITKKNKKNRAKLPFNHRAGSKSFLQLQHELKIKEGSDIGPVDLFGE 137

Query: 141 THV-RAGTFVSQAAEDAYKLNSSLL 144
           +H       V+  AEDAY+   +L+
Sbjct: 138 SHYNEKDGLVNDNAEDAYENMQNLI 161

[Close]

BLAST of MELO3C029673.2 vs. NCBI nr
Match: XP_019078959.1 (PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera])

HSP 1 Score: 63.9 bits (154), Expect = 5.1e-07
Identity = 36/140 (25.71%), Postives = 68/140 (48.57%), Query Frame = 0


Query: 20  VQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDED 79
           ++  F LD   + + + +E Q+   F+ ++ D H+HFKK+    EA+ NP  + V   ED
Sbjct: 96  IKEKFALDLTQEHVKKSLEKQLSDRFRNWRCDLHKHFKKFPTVVEAKRNPHES-VSNQED 155

Query: 80  WHFLCNHYISRAFQEQSRTNK---------------------YELAERRGQPVDRVELFR 138
           W +LC+ + S  F+ +S  N                       +++   G+ V ++ELF+
Sbjct: 156 WDYLCDRFSSEEFKRRSAINSVNRSKMPFHHRGGSRSFIQHGLQVSTENGEMVGQIELFK 215

[Close]

BLAST of MELO3C029673.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 4.6e-49
Identity = 102/139 (73.38%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           ++QR FVLDFNDQ MNRFVEHQM+TTFKEFQ DCHRHFKKYSD EEARANPPNALVGRDE
Sbjct: 112 DLQRFFVLDFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDE 171

Query: 79  DWHFLCNHYISRAFQEQSRTNK---------------------YELAERRGQPVDRVELF 137
           DWHFL +HYI RAFQEQS TNK                     YELAER+G+PVD VELF
Sbjct: 172 DWHFLYDHYIRRAFQEQSWTNKAARQKQPYNHSSGSKSFLQRQYELAERKGEPVDCVELF 231

[Close]

BLAST of MELO3C029673.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.7e-22
Identity = 56/93 (60.22%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 1   MISFETYLTLTNLMCYVCNVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYS 60
           ++  E Y+T    +  V    + FVLDF+DQ MN  VE+QM  TFKEF  DCH+ FKKYS
Sbjct: 107 LLELECYVTGREYIEVVKADLQFFVLDFSDQAMNTSVEYQMSNTFKEFWGDCHKQFKKYS 166

Query: 61  DSEEARANPPNALVGRDEDWHFLCNHYISRAFQ 94
           D EEARANPPN LVGR+EDWHFL +HY+S AFQ
Sbjct: 167 DPEEARANPPNLLVGRNEDWHFLYDHYMSHAFQ 199

[Close]

BLAST of MELO3C029673.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.1e-17
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 19  NVQRLFVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRDE 78
           N+QR FVLDFNDQ +NRFVEHQMLTTFKEF  DCHRHFK      EARANPPN LVGR E
Sbjct: 121 NLQRFFVLDFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHE 175

Query: 79  D 80
           D
Sbjct: 181 D 175

[Close]

BLAST of MELO3C029673.2 vs. TrEMBL
Match: tr|A0A251PCN4|A0A251PCN4_PRUPE (Serine/threonine-protein phosphatase OS=Prunus persica OX=3760 GN=PRUPE_5G201300 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.8e-07
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 26  LDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRD--EDWHFL 85
           +D  +     +V   M   F++F+ + H+HFK +  +EEA ANPP  +V RD   +W  L
Sbjct: 136 IDLKNVDCGNYVNKIMARRFRDFKHELHKHFKFFPSAEEALANPPLEIVERDATHEWLVL 195

Query: 86  CNHYISRAFQEQSRTNKYELAERRGQ----PVD-RVELFRETHVRAGTFVSQAAEDAYKL 143
           C H+ S  F + SR N+   A+++ +    P D RVE  R +     TF SQ++  +   
Sbjct: 196 CTHFQSPNFLKASRANEVNQAKKKIEHLVPPADARVE--RASVAAQSTFASQSSSASPSC 255

[Close]

BLAST of MELO3C029673.2 vs. TrEMBL
Match: tr|A0A251PB03|A0A251PB03_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G199500 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.4e-06
Identity = 27/86 (31.40%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 24  FVLDFNDQTMNRFVEHQMLTTFKEFQADCHRHFKKYSDSEEARANPPNALVGRD--EDWH 83
           F +D +   +  +++  M   F++F+ + H+HF+ +S  EEA ANPP  ++ RD   +W 
Sbjct: 214 FDIDLDMVGLRGYIDLVMARRFRDFKHELHKHFQLFSSPEEALANPPLEIIERDAVHEWE 273

Query: 84  FLCNHYISRAFQEQSRTNKYELAERR 108
           +LC+H+ S+ F   S  NK   ++++
Sbjct: 274 YLCDHFQSQDFLRASNANKANRSKKK 299

The following BLAST results are available for this feature:

BLAST of MELO3C029673.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	7.0e-49	73.38	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901155.1	2.5e-22	60.22	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]
XP_016901035.1	9.3e-17	77.05	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_022156286.1	2.9e-10	30.34	uncharacterized protein LOC111023212 [Momordica charantia]	[more]
XP_019078959.1	5.1e-07	25.71	PREDICTED: uncharacterized protein LOC104881002 [Vitis vinifera]	[more]

BLAST of MELO3C029673.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029673.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029673.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	4.6e-49	73.38	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	1.7e-22	60.22	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	6.1e-17	77.05	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A251PCN4\|A0A251PCN4_PRUPE	9.8e-07	33.06	Serine/threonine-protein phosphatase OS=Prunus persica OX=3760 GN=PRUPE_5G201300...	[more]
tr\|A0A251PB03\|A0A251PB03_PRUPE	6.4e-06	31.40	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G199500 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004252	Probable_transposase_24

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029673.2.1	MELO3C029673.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004252	Probable transposase, Ptta/En/Spm, plant	PFAM	PF03004	Transposase_24	coord: 97..141 e-value: 2.3E-5 score: 24.4

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029673.2	Cucumber (Gy14) v2	cgybmedB048
MELO3C029673.2	Cucurbita maxima (Rimu)	cmamedB060
MELO3C029673.2	Cucurbita maxima (Rimu)	cmamedB115
MELO3C029673.2	Cucurbita moschata (Rifu)	cmomedB052
MELO3C029673.2	Cucurbita moschata (Rifu)	cmomedB106
MELO3C029673.2	Cucurbita pepo (Zucchini)	cpemedB392
MELO3C029673.2	Cucurbita pepo (Zucchini)	cpemedB736
MELO3C029673.2	Wild cucumber (PI 183967)	cpimedB053
MELO3C029673.2	Cucumber (Chinese Long) v2	cumedB050
MELO3C029673.2	Bottle gourd (USVL1VR-Ls)	lsimedB425
MELO3C029673.2	Watermelon (Charleston Gray)	medwcgB249
MELO3C029673.2	Watermelon (97103) v1	medwmB277
MELO3C029673.2	Watermelon (97103) v1	medwmB288
MELO3C029673.2	Silver-seed gourd	carmedB0036
MELO3C029673.2	Silver-seed gourd	carmedB0135
MELO3C029673.2	Cucumber (Chinese Long) v3	cucmedB055
MELO3C029673.2	Watermelon (97103) v2	medwmbB251
MELO3C029673.2	Wax gourd	medwgoB290