MELO3C029626.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029626.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	CASP-like protein
Location	chr02 : 14681227 .. 14684955 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTTGGGGATTTGATGATGAAATAGTGGAAGAGAGAGTAAATAGAAAGGAGGGGTTAGGTTTGGAAGAAATTGCAACACGTGAAGAAGCGGATAATTTATTTAAATATAtTATGATAACAATGTTATTCTAAAACAATTTACTAAAATACTTTTTTTTTCTTTCCTTTTTTTAATCCTTCCAGTAGAGCGAGTTCCTAAAACTTGCCCAATTTAATTTTTTTTTTAAAAATAAGAAAACACAAAGGGGTTGTTTGGTGTCCAGGTTCAGAATCAAATGCTTGGGAATTAAATGCCTGTGGACTTATCTGATGGGCTTTTGATGTCTGGGAATTAGAAATGATTGTGTTTGGAGTGCAGGATTTGAAAATCTGGGTGTGTGCTGGATTTGTAAATTAAATCTTGTTTTCGTTTGAATGTTGGTTTTACATTCCTGGGTTTAACTTGCTTAGTTTTTTTTTGCGAATTATACATCCTAAAATTTATCATGTATCAATTATTAAATTGAAATATTTTTTATTTTAAATTATATACCTCTAATTCAATTTCTTTACTCTACTGATTTTTCATGACAATAATATGAAAACGAGAAATTTTAACATTCAATAATAATAATTTTGATCTAAATTGCATTAACATGATTGCTCTAATTAGGAATATTACAATCCATCTACAAAATATACCAAGTCATTTAATTTGATGGGGTTTACAAAAGTTATAGTTAAGCAAGGGGTCTAGTTTGTTTCAAAAGTAAGCAACCAAAGGCTCAAACAAAAGTGAAAGTTAAGTAATTATTAGTTACTTTAGTTATGGTTATGGTTGTCTTTCTAAGATACACATGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCTCTTTTTCGATAGCTGCTCAATCTCATCACTTTCCGACCGGCTCTACCACTTACTTGAACTACTTGACCACCGCAACCACCGGCACAGCCCATGTCGAACTTCCGTCTTCACTATCGCTTCTTTTCAGTTACTCTTTATCTTCTTCTCCTTTCATTTTTTCTCTCTCTTTCAGCCATTCGCAGGACGTTGATGATGAATCCGATCAAGATTCTCTGGTCTCTCGCTTTCAACGCTACCTCAGAATCTAAACCGCACATCCAGATCCCGATTACGCCTCCGCCGTCGCCTTCCTCAGATCTCAAGCACAAGAAATCGGTCTCCATACGCAGGCACTCGAGTTCGGTCCAGGTAAGCCTCTTCTTCTTGTGACTTGGTATGGGTCATACGTAGGCACAGAAGTCGCCTCCGCTAATCCTCCATCTCCCAGACCTGTAGCAGCCAACCGCGCGCAGCCATCTGAGCCGATTGTTGTGACGAAGGTGGATACTGAAATACAGCTGGTGCGGAAGGTGGAAGAGGTTAGCGATAGTGATGGCGATGGCGATGTAGAGAGTGCCGATGGCGGTAAGGTTGGGCGAGGACGGAAGTTGATGGAGAGAGTATGA

mRNA sequence

ATGGAAATTTGGGGATTTGATGATGAAATAGTGGAAGAGAGAGTAAATAGAAAGGAGGGGTTAGGTTTGGAAGAAATTGCAACACCCATTCGCAGGACGTTGATGATGAATCCGATCAAGATTCTCTGGTCTCTCGCTTTCAACGCTACCTCAGAATCTAAACCGCACATCCAGATCCCGATTACGCCTCCGCCGTCGCCTTCCTCAGATCTCAAGCACAAGAAATCGGCACTCGAGTTCGGTCCAGGTAAGCCTCTTCTTCTTGTGACTTGGTATGGGTCATACGTAGGCACAGAAGTCGCCTCCGCTAATCCTCCATCTCCCAGACCTGTAGCAGCCAACCGCGCGCAGCCATCTGAGCCGATTGTTGTGACGAAGGTGGATACTGAAATACAGCTGGTGCGGAAGGTGGAAGAGGTTAGCGATAGTGATGGCGATGGCGATGTAGAGAGTGCCGATGGCGGTAAGGTTGGGCGAGGACGGAAGTTGATGGAGAGAGTATGA

Coding sequence (CDS)

ATGGAAATTTGGGGATTTGATGATGAAATAGTGGAAGAGAGAGTAAATAGAAAGGAGGGGTTAGGTTTGGAAGAAATTGCAACACCCATTCGCAGGACGTTGATGATGAATCCGATCAAGATTCTCTGGTCTCTCGCTTTCAACGCTACCTCAGAATCTAAACCGCACATCCAGATCCCGATTACGCCTCCGCCGTCGCCTTCCTCAGATCTCAAGCACAAGAAATCGGCACTCGAGTTCGGTCCAGGTAAGCCTCTTCTTCTTGTGACTTGGTATGGGTCATACGTAGGCACAGAAGTCGCCTCCGCTAATCCTCCATCTCCCAGACCTGTAGCAGCCAACCGCGCGCAGCCATCTGAGCCGATTGTTGTGACGAAGGTGGATACTGAAATACAGCTGGTGCGGAAGGTGGAAGAGGTTAGCGATAGTGATGGCGATGGCGATGTAGAGAGTGCCGATGGCGGTAAGGTTGGGCGAGGACGGAAGTTGATGGAGAGAGTATGA

Protein sequence

MEIWGFDDEIVEERVNRKEGLGLEEIATPIRRTLMMNPIKILWSLAFNATSESKPHIQIPITPPPSPSSDLKHKKSALEFGPGKPLLLVTWYGSYVGTEVASANPPSPRPVAANRAQPSEPIVVTKVDTEIQLVRKVEEVSDSDGDGDVESADGGKVGRGRKLMERV

Homology

[Close]

BLAST of MELO3C029626.2 vs. NCBI nr
Match: XP_008458753.1 (PREDICTED: CASP-like protein 4A1 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 4.2e-21
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 102 SANPPSPRPVAANRAQPSEPIVVTKVDTEIQLVRKVEEVSDSDGDGDVESADGGKVGRGR 161
           SANPPSPRPVAANRAQPSEPIVVTKVDTEIQ VRKVEEVSDS  DGDVESADGGKVGRGR
Sbjct: 101 SANPPSPRPVAANRAQPSEPIVVTKVDTEIQGVRKVEEVSDS--DGDVESADGGKVGRGR 160

Query: 162 KLME 166
           KLME
Sbjct: 161 KLME 162

[Close]

BLAST of MELO3C029626.2 vs. NCBI nr
Match: XP_022133823.1 (CASP-like protein 4A1 [Momordica charantia] >XP_022133824.1 CASP-like protein 4A1 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 104 NPPSPRPVAANRAQPSEPIVVTKVDTEIQLVRKVEEVSDSDGDGDVESADGGKVGRGRKL 163
           NPPSPRPVAANRAQP+EPIVVT+VD EIQ VRKV++VSD+    DVES DGG VGRGRKL
Sbjct: 93  NPPSPRPVAANRAQPTEPIVVTEVDAEIQGVRKVQDVSDA----DVESGDGGAVGRGRKL 149

Query: 164 M 165
           M
Sbjct: 153 M 149

[Close]

BLAST of MELO3C029626.2 vs. NCBI nr
Match: XP_004142358.1 (PREDICTED: CASP-like protein 4A3 [Cucumis sativus] >KGN52378.1 hypothetical protein Csa_5G630810 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 8.4e-14
Identity = 53/69 (76.81%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 102 SANPPSPRPVAANRAQPSEPIVVTKVDTEIQLVRKVEEVSDSDGDGDVES-----ADGGK 161
           SAN PSPRPVAANRAQPSEPIVVTKVDTEIQ +RKVEEV DS  DGDVES          
Sbjct: 109 SANSPSPRPVAANRAQPSEPIVVTKVDTEIQGIRKVEEVIDS--DGDVESXXXXXXXXXX 168

Query: 162 VGRGRKLME 166
           VGRGRKLME
Sbjct: 169 VGRGRKLME 175

[Close]

BLAST of MELO3C029626.2 vs. NCBI nr
Match: XP_008456226.1 (PREDICTED: aminoacylase-1-like [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 8.4e-14
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 25 EIATPIRRTLMMNPIKILWSLAFNATSESKPHIQIPITPPPSPSSDLKHKKS 77
          ++   IR  LMMNPIKIL SLAFNATSESKPHIQIPI PPPSPSSDLKHKKS
Sbjct: 28 DLGISIRSMLMMNPIKILRSLAFNATSESKPHIQIPIMPPPSPSSDLKHKKS 79

[Close]

BLAST of MELO3C029626.2 vs. NCBI nr
Match: XP_008460512.2 (PREDICTED: coatomer subunit beta'-1-like [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 35 MMNPIKILWSLAFNATSESKPHIQIPITPPPSPSSDLKHKKS 77
          MMNPIKILWSLAFNATSESKPHIQIPITPPPS SSDLKHKKS
Sbjct: 1  MMNPIKILWSLAFNATSESKPHIQIPITPPPSSSSDLKHKKS 42

[Close]

BLAST of MELO3C029626.2 vs. TrEMBL
Match: tr|A0A1S3C844|A0A1S3C844_CUCME (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498066 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 61/64 (95.31%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 102 SANPPSPRPVAANRAQPSEPIVVTKVDTEIQLVRKVEEVSDSDGDGDVESADGGKVGRGR 161
           SANPPSPRPVAANRAQPSEPIVVTKVDTEIQ VRKVEEVSDS  DGDVESADGGKVGRGR
Sbjct: 101 SANPPSPRPVAANRAQPSEPIVVTKVDTEIQGVRKVEEVSDS--DGDVESADGGKVGRGR 160

Query: 162 KLME 166
           KLME
Sbjct: 161 KLME 162

[Close]

BLAST of MELO3C029626.2 vs. TrEMBL
Match: tr|A0A1S3C3E8|A0A1S3C3E8_CUCME (aminoacylase-1-like OS=Cucumis melo OX=3656 GN=LOC103496230 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.5e-14
Identity = 43/52 (82.69%), Postives = 45/52 (86.54%), Query Frame = 0


Query: 25 EIATPIRRTLMMNPIKILWSLAFNATSESKPHIQIPITPPPSPSSDLKHKKS 77
          ++   IR  LMMNPIKIL SLAFNATSESKPHIQIPI PPPSPSSDLKHKKS
Sbjct: 28 DLGISIRSMLMMNPIKILRSLAFNATSESKPHIQIPIMPPPSPSSDLKHKKS 79

[Close]

BLAST of MELO3C029626.2 vs. TrEMBL
Match: tr|A0A0A0KS01|A0A0A0KS01_CUCSA (CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G630810 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.5e-14
Identity = 53/69 (76.81%), Postives = 54/69 (78.26%), Query Frame = 0


Query: 102 SANPPSPRPVAANRAQPSEPIVVTKVDTEIQLVRKVEEVSDSDGDGDVES-----ADGGK 161
           SAN PSPRPVAANRAQPSEPIVVTKVDTEIQ +RKVEEV DS  DGDVES          
Sbjct: 109 SANSPSPRPVAANRAQPSEPIVVTKVDTEIQGIRKVEEVIDS--DGDVESXXXXXXXXXX 168

Query: 162 VGRGRKLME 166
           VGRGRKLME
Sbjct: 169 VGRGRKLME 175

[Close]

BLAST of MELO3C029626.2 vs. TrEMBL
Match: tr|A0A1S3CDW5|A0A1S3CDW5_CUCME (coatomer subunit beta'-1-like OS=Cucumis melo OX=3656 GN=LOC103499311 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.2e-14
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 0


Query: 35 MMNPIKILWSLAFNATSESKPHIQIPITPPPSPSSDLKHKKS 77
          MMNPIKILWSLAFNATSESKPHIQIPITPPPS SSDLKHKKS
Sbjct: 1  MMNPIKILWSLAFNATSESKPHIQIPITPPPSSSSDLKHKKS 42

The following BLAST results are available for this feature:

BLAST of MELO3C029626.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008458753.1	4.2e-21	95.31	PREDICTED: CASP-like protein 4A1 [Cucumis melo]	[more]
XP_022133823.1	1.3e-14	78.69	CASP-like protein 4A1 [Momordica charantia] >XP_022133824.1 CASP-like protein 4A...	[more]
XP_004142358.1	8.4e-14	76.81	PREDICTED: CASP-like protein 4A3 [Cucumis sativus] >KGN52378.1 hypothetical prot...	[more]
XP_008456226.1	8.4e-14	82.69	PREDICTED: aminoacylase-1-like [Cucumis melo]	[more]
XP_008460512.2	1.1e-13	97.62	PREDICTED: coatomer subunit beta'-1-like [Cucumis melo]	[more]

BLAST of MELO3C029626.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029626.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029626.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C844\|A0A1S3C844_CUCME	2.7e-21	95.31	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103498066 PE=3 SV=1	[more]
tr\|A0A1S3C3E8\|A0A1S3C3E8_CUCME	5.5e-14	82.69	aminoacylase-1-like OS=Cucumis melo OX=3656 GN=LOC103496230 PE=4 SV=1	[more]
tr\|A0A0A0KS01\|A0A0A0KS01_CUCSA	5.5e-14	76.81	CASP-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G630810 PE=3 SV=1	[more]
tr\|A0A1S3CDW5\|A0A1S3CDW5_CUCME	7.2e-14	97.62	coatomer subunit beta'-1-like OS=Cucumis melo OX=3656 GN=LOC103499311 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029626.2.1	MELO3C029626.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..167

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029626.2	Silver-seed gourd	carmedB0515
MELO3C029626.2	Silver-seed gourd	carmedB0906
MELO3C029626.2	Cucumber (Chinese Long) v3	cucmedB041
MELO3C029626.2	Cucumber (Gy14) v2	cgybmedB034
MELO3C029626.2	Cucumber (Gy14) v1	cgymedB646
MELO3C029626.2	Cucurbita maxima (Rimu)	cmamedB114
MELO3C029626.2	Cucurbita moschata (Rifu)	cmomedB107
MELO3C029626.2	Wild cucumber (PI 183967)	cpimedB038
MELO3C029626.2	Cucumber (Chinese Long) v2	cumedB035
MELO3C029626.2	Bottle gourd (USVL1VR-Ls)	lsimedB420