MELO3C029625.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029625.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr02 : 14535079 .. 14535303 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGTTCGTCACGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGAGTGCTTGGTGGAATTGGTTTCAGCTAGGGGATGGAGGTTTGATAATGGGACATTTCGATTTGGGTACCTGGCCCAATTGCAACGAATGATGGTAGAGAAGTTGCCCGACACTAATATCCAAGGATCGCCGACAATAGATTGTCGTGTGAAATCTCTTTAA

mRNA sequence

ATGGTAAGTTCGTCACGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGAGTGCTTGGTGGAATTGGTTTCAGCTAGGGGATGGAGGTTTGATAATGGGACATTTCGATTTGGGTACCTGGCCCAATTGCAACGAATGATGGTAGAGAAGTTGCCCGACACTAATATCCAAGGATCGCCGACAATAGATTGTCGTGTGAAATCTCTTTAA

Coding sequence (CDS)

ATGGTAAGTTCGTCACGAGCACCGAAACACACATGGACTAAAGAGGAAGAAGCAAAACTTGTTGAGTGCTTGGTGGAATTGGTTTCAGCTAGGGGATGGAGGTTTGATAATGGGACATTTCGATTTGGGTACCTGGCCCAATTGCAACGAATGATGGTAGAGAAGTTGCCCGACACTAATATCCAAGGATCGCCGACAATAGATTGTCGTGTGAAATCTCTTTAA

Protein sequence

MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTNIQGSPTIDCRVKSL
Homology
[Close]
BLAST of MELO3C029625.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 7.2e-26
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M S SRAPKHTWTKEEE K VECLVELVS+ GWR DNGTF+ GYLAQLQRMM EKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQGSPTIDCRVKSL 75
          IQ S TIDC VKSL
Sbjct: 61 IQESSTIDCHVKSL 74

[Close]
BLAST of MELO3C029625.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 107.1 bits (266), Expect = 2.7e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 1   MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
           M SSSR PKHTWTKEEEA LVECLVELV+A GWR DNGTFR GYL QL RMM  K+P +N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IQGSPTIDCRVK 73
           I  S TID R+K
Sbjct: 416 IHAS-TIDSRIK 426

[Close]
BLAST of MELO3C029625.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/74 (66.22%), Postives = 52/74 (70.27%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M SSSR PKHTWTKEEEA     LVELV+A GWR DNGTF  GYL QL RMM  K+P  N
Sbjct: 1  MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61 IQGSPTIDCRVKSL 75
          I  S TID R+K L
Sbjct: 61 IHAS-TIDSRIKLL 69

[Close]
BLAST of MELO3C029625.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M SSSR PKHTWTKEEEA     LVELV+  GWR DNGTFR GYL QL RMM  K+P +N
Sbjct: 1  MTSSSRLPKHTWTKEEEAG----LVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 IQGSPTIDCRVK 73
          I  S TID R+K
Sbjct: 61 IHAS-TIDSRIK 67

[Close]
BLAST of MELO3C029625.2 vs. NCBI nr
Match: ADN33917.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 85.9 bits (211), Expect = 6.3e-14
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M SSSR  KH W KE++A LVECLV+LV++ GW  DNGTF  GY +QL RMM +K+   N
Sbjct: 1  MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61 IQGSPTIDCRVKSL 75
          IQ + TID  +K++
Sbjct: 61 IQAT-TIDSCIKTM 73

[Close]
BLAST of MELO3C029625.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.8e-26
Identity = 60/74 (81.08%), Postives = 62/74 (83.78%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M S SRAPKHTWTKEEE K VECLVELVS+ GWR DNGTF+ GYLAQLQRMM EKLP TN
Sbjct: 1  MASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTN 60

Query: 61 IQGSPTIDCRVKSL 75
          IQ S TIDC VKSL
Sbjct: 61 IQESSTIDCHVKSL 74

[Close]
BLAST of MELO3C029625.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.8e-20
Identity = 53/72 (73.61%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 1   MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
           M SSSR PKHTWTKEEEA LVECLVELV+A GWR DNGTFR GYL QL RMM  K+P +N
Sbjct: 356 MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 415

Query: 61  IQGSPTIDCRVK 73
           I  S TID R+K
Sbjct: 416 IHAS-TIDSRIK 426

[Close]
BLAST of MELO3C029625.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-16
Identity = 49/74 (66.22%), Postives = 52/74 (70.27%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M SSSR PKHTWTKEEEA     LVELV+A GWR DNGTF  GYL QL RMM  K+P  N
Sbjct: 1  MTSSSRLPKHTWTKEEEAS----LVELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCN 60

Query: 61 IQGSPTIDCRVKSL 75
          I  S TID R+K L
Sbjct: 61 IHAS-TIDSRIKLL 69

[Close]
BLAST of MELO3C029625.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 48/72 (66.67%), Postives = 52/72 (72.22%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M SSSR PKHTWTKEEEA     LVELV+  GWR DNGTFR GYL QL RMM  K+P +N
Sbjct: 1  MTSSSRLPKHTWTKEEEAG----LVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSN 60

Query: 61 IQGSPTIDCRVK 73
          I  S TID R+K
Sbjct: 61 IHAS-TIDSRIK 67

[Close]
BLAST of MELO3C029625.2 vs. TrEMBL
Match: tr|E5GBS5|E5GBS5_CUCME (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-14
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0 

Query: 1  MVSSSRAPKHTWTKEEEAKLVECLVELVSARGWRFDNGTFRFGYLAQLQRMMVEKLPDTN 60
          M SSSR  KH W KE++A LVECLV+LV++ GW  DNGTF  GY +QL RMM +K+   N
Sbjct: 1  MASSSRDLKHLWIKEKDATLVECLVKLVNSSGWWSDNGTFGLGYYSQLTRMMAQKMSGPN 60

Query: 61 IQGSPTIDCRVKSL 75
          IQ + TID  +K++
Sbjct: 61 IQAT-TIDSCIKTM 73

The following BLAST results are available for this feature:
BLAST of MELO3C029625.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441954.17.2e-2681.08PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
ADN34114.12.7e-2073.61retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008459131.11.2e-1566.22PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
XP_008466949.12.0e-1566.67PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
ADN33917.16.3e-1455.41hypothetical protein [Cucumis melo subsp. melo][more]
BLAST of MELO3C029625.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029625.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029625.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME4.8e-2681.08uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME1.8e-2073.61Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME7.6e-1666.22uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME1.3e-1566.67uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|E5GBS5|E5GBS5_CUCME4.2e-1455.41Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029625.2.1MELO3C029625.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704:SF62SUBFAMILY NOT NAMEDcoord: 7..74
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 7..74

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029625.2Cucumber (Gy14) v2cgybmedB034
MELO3C029625.2Cucumber (Gy14) v1cgymedB646
MELO3C029625.2Cucurbita maxima (Rimu)cmamedB075
MELO3C029625.2Cucurbita maxima (Rimu)cmamedB114
MELO3C029625.2Cucurbita moschata (Rifu)cmomedB068
MELO3C029625.2Cucurbita moschata (Rifu)cmomedB107
MELO3C029625.2Wild cucumber (PI 183967)cpimedB038
MELO3C029625.2Cucumber (Chinese Long) v2cumedB035
MELO3C029625.2Bottle gourd (USVL1VR-Ls)lsimedB420
MELO3C029625.2Watermelon (97103) v1medwmB261
MELO3C029625.2Silver-seed gourdcarmedB0906
MELO3C029625.2Cucumber (Chinese Long) v3cucmedB041