MELO3C029623.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029623.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr02 : 14456407 .. 14456616 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGGTGTCAATGGGGGGATGGAAATCAAATAATGGTACGATTCGACCAGGTTACCTAGCCCAGTTGGTATGCATGATGGCGGAGAAACTACCTGGATATCAGGTCCGCGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGGACATTCCAGACCATCGTCGAAATGTGGGGGCCAGCGTGCAGTGACTTTGGGTGA

mRNA sequence

ATGGAGTTGGTGTCAATGGGGGGATGGAAATCAAATAATGGTACGATTCGACCAGGTTACCTAGCCCAGTTGGTATGCATGATGGCGGAGAAACTACCTGGATATCAGGTCCGCGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGGACATTCCAGACCATCGTCGAAATGTGGGGGCCAGCGTGCAGTGACTTTGGGTGA

Coding sequence (CDS)

ATGGAGTTGGTGTCAATGGGGGGATGGAAATCAAATAATGGTACGATTCGACCAGGTTACCTAGCCCAGTTGGTATGCATGATGGCGGAGAAACTACCTGGATATCAGGTCCGCGCAACGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGGACATTCCAGACCATCGTCGAAATGTGGGGGCCAGCGTGCAGTGACTTTGGGTGA

Protein sequence

MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEMWGPACSDFG
Homology
[Close]
BLAST of MELO3C029623.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 60/69 (86.96%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1   MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
           MELVSMGGWKS+NGT RPGYLAQLV MMAEKL G QVRATTVIDCRIKTLKRTFQ I EM
Sbjct: 342 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEM 401

Query: 61  WGPACSDFG 70
            GPACS FG
Sbjct: 402 LGPACSGFG 410

[Close]
BLAST of MELO3C029623.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 99.0 bits (245), Expect = 6.7e-18
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 1  MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
          +ELVS GGW+S+NGT +PGYLAQL  MMAEKLPG  ++ ++ IDC +K+LK+T+  I EM
Sbjct: 25 VELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEM 84

Query: 61 WGPACSDFG 70
           GP+CS FG
Sbjct: 85 RGPSCSGFG 93

[Close]
BLAST of MELO3C029623.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 88.6 bits (218), Expect = 9.1e-15
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1  MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
          +ELV++GGW+S+NGT RPGYL QL  MMA K+PG  + A+T ID RIK +KR F  + EM
Sbjct: 21 VELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 80

Query: 61 WGPACSDFG 70
           GP CS FG
Sbjct: 81 RGPNCSGFG 88

[Close]
BLAST of MELO3C029623.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 87.8 bits (216), Expect = 1.6e-14
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 1   MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
           +ELV+ GGW+S+NGT RPGYL QL  MMA K+PG  + A+T ID RIK +KR F  + EM
Sbjct: 380 VELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 439

Query: 61  WGPACSDFG 70
            GP CS FG
Sbjct: 440 RGPNCSGFG 447

[Close]
BLAST of MELO3C029623.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.5e-14
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 1  MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
          +ELV+ GGW+S+NGT  PGYL QL  MMA K+PG  + A+T ID RIK LKR F  + EM
Sbjct: 21 VELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCNIHAST-IDSRIKLLKRMFHALAEM 80

Query: 61 WGPACSDFG 70
           GP CS FG
Sbjct: 81 RGPNCSGFG 88

[Close]
BLAST of MELO3C029623.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 7.6e-26
Identity = 60/69 (86.96%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1   MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
           MELVSMGGWKS+NGT RPGYLAQLV MMAEKL G QVRATTVIDCRIKTLKRTFQ I EM
Sbjct: 342 MELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEM 401

Query: 61  WGPACSDFG 70
            GPACS FG
Sbjct: 402 LGPACSGFG 410

[Close]
BLAST of MELO3C029623.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.5e-18
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 0 

Query: 1  MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
          +ELVS GGW+S+NGT +PGYLAQL  MMAEKLPG  ++ ++ IDC +K+LK+T+  I EM
Sbjct: 25 VELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEM 84

Query: 61 WGPACSDFG 70
           GP+CS FG
Sbjct: 85 RGPSCSGFG 93

[Close]
BLAST of MELO3C029623.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-15
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 0 

Query: 1  MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
          +ELV++GGW+S+NGT RPGYL QL  MMA K+PG  + A+T ID RIK +KR F  + EM
Sbjct: 21 VELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 80

Query: 61 WGPACSDFG 70
           GP CS FG
Sbjct: 81 RGPNCSGFG 88

[Close]
BLAST of MELO3C029623.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0 

Query: 1   MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
           +ELV+ GGW+S+NGT RPGYL QL  MMA K+PG  + A+T ID RIK +KR F  + EM
Sbjct: 380 VELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHAST-IDSRIKLMKRMFHALAEM 439

Query: 61  WGPACSDFG 70
            GP CS FG
Sbjct: 440 RGPNCSGFG 447

[Close]
BLAST of MELO3C029623.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-14
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 0 

Query: 1  MELVSMGGWKSNNGTIRPGYLAQLVCMMAEKLPGYQVRATTVIDCRIKTLKRTFQTIVEM 60
          +ELV+ GGW+S+NGT  PGYL QL  MMA K+PG  + A+T ID RIK LKR F  + EM
Sbjct: 21 VELVNAGGWRSDNGTFHPGYLNQLARMMAFKIPGCNIHAST-IDSRIKLLKRMFHALAEM 80

Query: 61 WGPACSDFG 70
           GP CS FG
Sbjct: 81 RGPNCSGFG 88

The following BLAST results are available for this feature:
BLAST of MELO3C029623.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33754.11.1e-2586.96retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.16.7e-1860.87PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
XP_008466949.19.1e-1559.42PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
ADN34114.11.6e-1459.42retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008459131.13.5e-1459.42PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
BLAST of MELO3C029623.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C029623.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C029623.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|E5GBB2|E5GBB2_CUCME7.6e-2686.96Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME4.5e-1860.87uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME6.0e-1559.42uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME1.0e-1459.42Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME2.3e-1459.42uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029623.2.1MELO3C029623.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029623.2Silver-seed gourdcarmedB0906
MELO3C029623.2Cucumber (Chinese Long) v3cucmedB041
MELO3C029623.2Wax gourdmedwgoB310
MELO3C029623.2Cucumber (Gy14) v2cgybmedB034
MELO3C029623.2Cucumber (Gy14) v1cgymedB646
MELO3C029623.2Cucurbita maxima (Rimu)cmamedB075
MELO3C029623.2Cucurbita maxima (Rimu)cmamedB114
MELO3C029623.2Cucurbita moschata (Rifu)cmomedB068
MELO3C029623.2Cucurbita moschata (Rifu)cmomedB107
MELO3C029623.2Wild cucumber (PI 183967)cpimedB038
MELO3C029623.2Cucumber (Chinese Long) v2cumedB035
MELO3C029623.2Bottle gourd (USVL1VR-Ls)lsimedB420
MELO3C029623.2Watermelon (Charleston Gray)medwcgB230
MELO3C029623.2Watermelon (97103) v1medwmB261