MELO3C029604.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029604.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Vacuolar protein sorting-associated protein, putative (DUF1162)
Location	chr02 : 12073826 .. 12076523 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAAAATTACGAAGATCTATCAGTGTTTGTCAATAGACACTTAAAGTTTGTATTTGTATATATTTTCAGCCGTTTTTCCATTTACAATAATTTCTCTTATTATTATTATGATTATTATTATTATTATTACTATTATTATTATTATGTCTTCTAACATTCTTAATATTGCAGATATGTCATAAGTAATGCATGTTCCCAAGATATCTGCTACAAACAGAAGGGAACTGATTATATCATCCCTTTGGCAGTTGGAGAACATTTCCATCTTCAGTGGACTGATACAACTAGGTATACTGGCTTGTGTGATTGTAGTATTCTCATTGTCACGGTTAGGAATCTACTTGAATTGTTTTATTTATGTCAATCAGAATCCATGCTCGATAAATTTTGACATGATGAAAGAGAGAATGATAATGGTCGAGATATCTACTTATTTCATTCAGAAAGCACTTCTTTCGTTGTTAAGACTTATATAATATATTGAATAAATCAAAGTGTACATAATAACCTATTACATTGGTGAATAAATAGAGACCAAATTTCTAATAAAGGAATACTACGAATACTGGAAATGTTAAATAGGAATAACCCCAAGAAACCCTAATTTGTTGAGTTCACATTAAATATATTTTATTCAATAATTTTTTCTCTTATTAATTTTTTCTTTTTTTTAATTTCATAAAAGAAATAAGTTGCTATTGCAGCGGGACTCATTCTATAAGTACTTCAATAAAAGACTGAACATGAAATTGACAACTTGGACCAAGTTGGATTGATATTCTTTGTTGTCTCTGTTTATTCTTGATGAAGATCTTCTTTAGGCTATTTCCCAACTGGCAGTGGTGCTTACTGTGTACTACCCATCGAGTAGTTTTTTTTAAAACGGAACATATCAAATTATTAATTAATGATGAGCAAAACCTAAGGATTAGTAGGCACACTAGGACTTCTCAACTAGGTCGATACCCCCTTAGTGTCCTCAGCATGTCCAAATGCTAATAATAAAGAATGGATTACAGCCAAATACAAAACCAGAGCAAACCTTTCCCCATAGGCTAACACGATGCAGTCTAATAATAGTAATAGAAAAAATACACTTCCTATCGCTTGAGCTTTGTAGCAAATCACAGGTAGCATGTAAAGGACTCAGAAGATGAAGGCCTCCCAATTCAGTTGGATCTCTTGAAAGGAATACTCTTGGAAAGATTTGGATAAAGAACACCACGACAAGGCATTTAATTGGACGAAACTCAAGGCAATCGTTCCAGCCTGCAGATTTATCAAGGAAGACTCGTTGAGATTTCTTTCTATCTGTAATTCTATTAGAAATGCGTTGACGTTGTTGCACCATAAGAGGAGAGAATTTTTCTTAATGACTAAACCCGTCAGAATTTGCAGCACATTATTTCTGATATTATTGTTAAAAATTTCCCAAACAATATTGAATATTTGCAGCAGTCGGTTCCACCAGTTTACAGCATAAGCGACAGCCAAAAATAGGTGCTGAAGATTTTCCTGGTAATTGAGACAAAAGGGGTGGCACATGTGGGATGAAAGGTAATGGGATGGGAGCTTTTTCTGTAATACCGAAGCACAGTTCAGACTTCCAAACAGCATGTTCCAAAGACTCCTTTGCAATGCATTGTCATTAGGTGAAGCTGGGGATAGATGATAGACTAGAGATTTAATAGTGAAAGAGCCGCTTAGACAAGCAATCAAACTCTTTTATCTAAGGAGGTATTTAACATTTTTCCTTCCAGTGAACTCAACAAAGCCTGAACTCCATGAGGTCTTAATCAGATTAAAGTCGATTGTCACTTGCTTTGTTTCCTGAATCAGAACCATATCTGAATTTGAATACTTAATAATCTTTTCAAAGCCAGTGTTTCGATTTTCTTTGAAGACCTCTTGTGTTCCACTAAATTATCTTCATACTTTCTCTTTTCTCAAATTAATTCAATCTCACAAGCTATTAAGAAAGGAACCAAATCTTGATTCAAGCTTGCAGCTTCCTTTTTGCAAGATTCTTTGGATTCTGGAGAAAGAAATAACTTGGGAAAATATGGCTCAATGTAATGAAGAATCTCAGCCTCCTCTTGTTCTTTTTGATGTTCCTCCAACTCCTCTAAATTCTCAATCTCTAACTCTTCGCTGCTTGCCTTGATTATCAATGCTTCATCTTCTGAGAGTTCCTTCTCAGGACTTCTAATTTTTTAAAAATGATGTGGACTACCTTGCGTAAAGTTAATGTCTAAGCCTGGAATTTTAAAATGAGATTGGTAGAAATTCAAGTTAGAAAATGTGATCATACGGACCTGTTGCAATCAAAATTGGAGGTTTGAATCTTCATATAGCTTTCTTCTAAAAGGTCAGAGTTCATTAGGGTTGTTCAAGTATTGTGGAATGATGTTCTCCCTTCTATAAAAAATTTCTAAGCAGTCTTGAATCTTTGATGATTCTTTGTAACGGATTGAGCAAAGGGCTTCTTTGCAGAGGATTTTTCCTTTTTTATTTCAAAGAAGATGGAGTGAATCTAAGGGGAAGGAGGAAATGAAAAGCCTTTAGAAGAAACAGTTATGGACTAAGGAGAATTGGCTTTCTCAGGCTCTTCCTCTTCCCCATTTGCATACCAAAAGCCAGGTGTTACTTCATTGAGTCTTTTATGGGGTCCATTGTTTCTGAGCCAAGCCTAA

mRNA sequence

ATGAACCAAAATTACGAAGATCTATCAGTGTTTGTCAATAGACACTTAAAATATGTCATAAGTAATGCATGTTCCCAAGATATCTGCTACAAACAGAAGGGAACTGATTATATCATCCCTTTGGCAGTTGGAGAACATTTCCATCTTCAGTGGACTGATACAACTAGGTATACTGGCTTGTGTGATTGTAGTATTCTCATTGTCACGGCTATTTCCCAACTGGCAGTGGTGCTTACTGTGTACTACCCATCGAGTACAGTCGGTTCCACCAGTTTACAGCATAAGCGACAGCCAAAAATAGGTGCTGAAGATTTTCCTGGCTCTTCCTCTTCCCCATTTGCATACCAAAAGCCAGGTGTTACTTCATTGAGTCTTTTATGGGGTCCATTGTTTCTGAGCCAAGCCTAA

Coding sequence (CDS)

ATGAACCAAAATTACGAAGATCTATCAGTGTTTGTCAATAGACACTTAAAATATGTCATAAGTAATGCATGTTCCCAAGATATCTGCTACAAACAGAAGGGAACTGATTATATCATCCCTTTGGCAGTTGGAGAACATTTCCATCTTCAGTGGACTGATACAACTAGGTATACTGGCTTGTGTGATTGTAGTATTCTCATTGTCACGGCTATTTCCCAACTGGCAGTGGTGCTTACTGTGTACTACCCATCGAGTACAGTCGGTTCCACCAGTTTACAGCATAAGCGACAGCCAAAAATAGGTGCTGAAGATTTTCCTGGCTCTTCCTCTTCCCCATTTGCATACCAAAAGCCAGGTGTTACTTCATTGAGTCTTTTATGGGGTCCATTGTTTCTGAGCCAAGCCTAA

Protein sequence

MNQNYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTRYTGLCDCSILIVTAISQLAVVLTVYYPSSTVGSTSLQHKRQPKIGAEDFPGSSSSPFAYQKPGVTSLSLLWGPLFLSQA

Homology

[Close]

BLAST of MELO3C029604.2 vs. NCBI nr
Match: KGN66649.1 (hypothetical protein Csa_1G652810 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 1.8e-22
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTRYTGLCDC 63
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTRY+GLCDC
Sbjct: 2203 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTRYSGLCDC 2262

Query: 64   SILIVTAISQL 75
            SI I+T  +QL
Sbjct: 2263 SIPIITVRNQL 2273

[Close]

BLAST of MELO3C029604.2 vs. NCBI nr
Match: XP_008443665.1 (PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR
Sbjct: 1164 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 1216

[Close]

BLAST of MELO3C029604.2 vs. NCBI nr
Match: XP_008443666.1 (PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR
Sbjct: 1164 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 1216

[Close]

BLAST of MELO3C029604.2 vs. NCBI nr
Match: XP_011660209.1 (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR
Sbjct: 2547 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 2599

[Close]

BLAST of MELO3C029604.2 vs. NCBI nr
Match: XP_011660210.1 (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR
Sbjct: 2547 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 2599

[Close]

BLAST of MELO3C029604.2 vs. TAIR10
Match: AT5G24740.1 (Protein of unknown function (DUF1162))

HSP 1 Score: 64.3 bits (155), Expect = 6.5e-11
Identity = 25/40 (62.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 17   KYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            +Y+I N+CS ++CYKQKGT+ +  LAVG+H  LQWTDTTR
Sbjct: 2541 RYIICNSCSHNLCYKQKGTNLVSHLAVGQHSQLQWTDTTR 2580

[Close]

BLAST of MELO3C029604.2 vs. TrEMBL
Match: tr|A0A0A0M027|A0A0A0M027_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652810 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 51/71 (71.83%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTRYTGLCDC 63
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTRY+GLCDC
Sbjct: 2203 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTRYSGLCDC 2262

Query: 64   SILIVTAISQL 75
            SI I+T  +QL
Sbjct: 2263 SIPIITVRNQL 2273

[Close]

BLAST of MELO3C029604.2 vs. TrEMBL
Match: tr|A0A1S3B9B2|A0A1S3B9B2_CUCME (uncharacterized protein LOC103487213 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487213 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR
Sbjct: 1164 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 1216

[Close]

BLAST of MELO3C029604.2 vs. TrEMBL
Match: tr|A0A1S3B8M2|A0A1S3B8M2_CUCME (uncharacterized protein LOC103487213 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487213 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.8e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 4    NYEDLSVFVNRHLKYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            ++ +++  +    +YVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR
Sbjct: 1164 SFPEMTSIIMFQPRYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 1216

[Close]

BLAST of MELO3C029604.2 vs. TrEMBL
Match: tr|A0A2P4LIH6|A0A2P4LIH6_QUESU (Putative vacuolar protein sorting-associated protein 13e OS=Quercus suber OX=58331 GN=CFP56_67463 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 17   KYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            +YVISNACS+D+CYKQKGTD++  L VGEH HLQWTDTTR
Sbjct: 2585 RYVISNACSKDLCYKQKGTDFVFQLGVGEHAHLQWTDTTR 2624

[Close]

BLAST of MELO3C029604.2 vs. TrEMBL
Match: tr|A0A067E8M4|A0A067E8M4_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0000281mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 17   KYVISNACSQDICYKQKGTDYIIPLAVGEHFHLQWTDTTR 57
            +YVISNACS+D+CYKQKGTD+I  L VG+H HL WTDTTR
Sbjct: 2090 RYVISNACSKDLCYKQKGTDFIFHLGVGQHSHLHWTDTTR 2129

The following BLAST results are available for this feature:

BLAST of MELO3C029604.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66649.1	1.8e-22	71.83	hypothetical protein Csa_1G652810 [Cucumis sativus]	[more]
XP_008443665.1	2.8e-15	73.58	PREDICTED: uncharacterized protein LOC103487213 isoform X1 [Cucumis melo]	[more]
XP_008443666.1	2.8e-15	73.58	PREDICTED: uncharacterized protein LOC103487213 isoform X2 [Cucumis melo]	[more]
XP_011660209.1	2.8e-15	73.58	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
XP_011660210.1	2.8e-15	73.58	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]

BLAST of MELO3C029604.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24740.1	6.5e-11	62.50	Protein of unknown function (DUF1162)	[more]

BLAST of MELO3C029604.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029604.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M027\|A0A0A0M027_CUCSA	1.2e-22	71.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652810 PE=4 SV=1	[more]
tr\|A0A1S3B9B2\|A0A1S3B9B2_CUCME	1.8e-15	73.58	uncharacterized protein LOC103487213 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B8M2\|A0A1S3B8M2_CUCME	1.8e-15	73.58	uncharacterized protein LOC103487213 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A2P4LIH6\|A0A2P4LIH6_QUESU	2.7e-11	77.50	Putative vacuolar protein sorting-associated protein 13e OS=Quercus suber OX=583...	[more]
tr\|A0A067E8M4\|A0A067E8M4_CITSI	2.3e-10	75.00	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0000281...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029604.2.1	MELO3C029604.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C029604.2	Csa1G652810	Cucumber (Chinese Long) v2	cumedB035
MELO3C029604.2	Cucsa.356480	Cucumber (Gy14) v1	cgymedB575

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029604.2	Cucumber (Gy14) v2	cgybmedB034
MELO3C029604.2	Cucurbita maxima (Rimu)	cmamedB072
MELO3C029604.2	Cucurbita maxima (Rimu)	cmamedB114
MELO3C029604.2	Cucurbita moschata (Rifu)	cmomedB064
MELO3C029604.2	Cucurbita moschata (Rifu)	cmomedB107
MELO3C029604.2	Cucurbita pepo (Zucchini)	cpemedB008
MELO3C029604.2	Cucurbita pepo (Zucchini)	cpemedB390
MELO3C029604.2	Wild cucumber (PI 183967)	cpimedB038
MELO3C029604.2	Bottle gourd (USVL1VR-Ls)	lsimedB420
MELO3C029604.2	Watermelon (Charleston Gray)	medwcgB230
MELO3C029604.2	Watermelon (97103) v1	medwmB254
MELO3C029604.2	Silver-seed gourd	carmedB0545
MELO3C029604.2	Silver-seed gourd	carmedB0952
MELO3C029604.2	Cucumber (Chinese Long) v3	cucmedB041
MELO3C029604.2	Watermelon (97103) v2	medwmbB229
MELO3C029604.2	Wax gourd	medwgoB310