MELO3C029549.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029549.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr02 : 8235474 .. 8240901 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCCTTCACTTTTGTGCATCTCCCCCTCTCGCAAAAGGTAACCCATCGTCGATCTCTTCCATCTTTATCTTCTCCGACTGTCTCGACTTCCATCCCTTTCGTCTTCCATCTTCCACAGTCGTCTGAAGTTCCCCGTGAAATGGCTAGTCATTGCCAAGACAATTCAACAATGGAGCCACACGGTGAATTTCAGTCAAGTAAGTGTTTATCTTTTTTCTCTAAAAAAAAGAGTGATCACTTATTATCCAGTCTCTTTCTCTTCCTCGTCCTTGTAGAAATCTTTAGATCTATTTTCTTTTTCCTCACCTGTTCCATTATGGTACTCTCACTTTGATGTCGTTGCCTTTGGTAGAACATTAGTACCCCTTGATTGAAATTTTGTATGTAATGTGCATCTTTCTCCTTTCCTTCCATCTCCCTATATGATTGCGTTTGAGATTGTAGGTTTGGGGTTTTTTTTGTAGAATAGTACCAAATCCGTGTACATTAATGATTTCAATGTAAATAATATTTTGATAAATGAGATGTTTAATTTAAATAGTTACGAACAAACTTTGTTCTTATCCTGAACGACATTGCTGCTAGAATATGTAGAATAGTTTATGGAAATGAAAATTGTACTTCATTCAAGTTACCAACTAATTATGGAGTGGAGTATTTAGAATGGTTAAAGGTGGAATACAATTATATGGTTGTAAGGTAATTCTTACATTTTAGATTATAGAAACTAGAAGAGGCTGGTAGAATCGTCTCGTTTGTTTGGTTAGAATACATTAAAAATGGTCAAATGTGCCAACTTTTTACTTGGCATCCTTCAGAATTGATTCTTAGTATTTTGGAAATTTGTCATTTGCATTTCAGAAGCAGTCTCTGCATTGCTATCTTTTTGGGCTGTAAATACAAATTTTTCCCTAGTTTTGTAGTTAGAGATATTTGAAGCAGCCATTTCTTTGATCCTTTTGTTGATAGGCTAATGGTCTTTTTTGAATTTGCTTCTTTTCCATATCATGCAGTCCTCTGGAATATTTGACCCCTATTATGAATCTTCTAGGAATAAATTGCTTGTAGGTTTGCATTTATTGTTCTGAAATGCTGATGGGAAGCTTTATATTTAACTTAGCTTATAGCTTGGTACATAATGTTTCATAAATTTTCTAGCTATTAGAACTTTGGAGGATATCCAATAGTCCTACTGCCACTTTCCATCTTTTTCCCATCCCGTCAGTCTGTAGTATCCCAAAAAGAAAACTAGTTGCCTAACTTGCCTTTAACTTATTGGAGAAGCAATCCCAACAACAATGTGAATTATCATCATTCATTTTTTCATCCAAGTATTTTGTTATGTTATGTTTCATCAAGTATATTGTTGTTATTCATATAAAAAAATGAATATGTTGTTATTAATATTATCAAATTTGAACCATGGATTGGCCTAATGATGAAAAAGAAGACATAGTCTCAATAACTATTTAAGAGGTTTTGAGTTCAACCAATTGTGGCCACTTATCTAAGAATTAATTTTTTACGAGTTTCCTTAACACCTAAATGTTGTAGGGTTAGACGGATTGTATTGTGAGATTAGTCAAGGTGCACATAAGCTGGCTTGAACACTCACAAATATAAGAAAAATTAAAAATTATCAAATTCAATGAGAAGAAAACTACAATTTGAGGAGAATGAAATAATAAAAAAGGGCTCACTAATAAGGCCAAACAAAAAATGGGGGAAAAGAAAAGCATATTGAAAACTGTTAGATTTTGAAAAACCCACATTGGAAAAACCAAGGGGACTCACACTTCTTAGAAGAAGATGGATGGGTTACCTCTTAGCCAATGGTTTTGAGATGGAACCTCATACTACTAAATATGATATCAGAGTAACTCTTTTTTATATTGCATGCCTGCAAGTGAGGGAGAGTGTTAGATATATAATTAAATTTACCCTTACTCACTACCTAGACTTTTGGGTCAATAGGTGATTTAAGAAAAAGATCCCTCATTTTTATTTTCAAAAAATCGTATTCCTCCCAAGCCAAATAAAATTTAGAATGACAATGAAGATAGTCCACCATATAGCATGACTTGCTTGTAAAGAAGAACTCTGAACAACTTCCGCAGATCTTTGAACATTAAGATTCAGGCATGAATGAGTGGCCATGAACTTTAGAGGAGAAAGAGTATAACCATGGAACATGATTTTTGTGTCATTCCCTAGCCATAGAAAATCTAGCAGTTTGGGATTAGAGCTCAAGTGGTAAACTTCTAGTGTCAATCCTTCCATAGACACCCAAGCAAAGAATCAAATCTTCTTTTTGATTTTTGGACTTCCACATAAAAGAGAGAGAAAAAGTGGTACAAGGAGGAGACAAGAGGCAAATGGTGAATGGCACATATGGGGTGGCTCACTTTGTCTAGTTCATGAGGTTTCAATATAAGGTTGAATTTAAAAGAGTTGCTCCCTCTTTATTTAGGAAGTGTTTAGTTTGAGAGGTTCCAAAATAGGTCGAATTTGAAAACTTGCAAGGCTGTTCGAGATCTCATACACAAGTGATATGAAGTGCATGAAAAAAAATGTCTTATAAATCTTGTCTCTGATTGTAGTAAACAACATTCATTTGTTTCTGCCAAGATAATGAAAGAACAGTTTAGATTGTCAAAATTAAATGCTTTCTACATTGTGATGTTTGTGATTTCATGGGGCTTCATGTGGTGGGTTGGTTAAGAAATGGTTTGGTAGGAGTGATTTCATTACTGAATAAAGGCTCCTTAGGAGGAAAAGGTCATCTAGTCTTCTGTCCAACCTCATGAACACAAGGGGAAAAAGTTACCCATTTATTAGGCTTGCCAAGATGGAATGGAGGGCTGGATAAGGTGCATTGCATTTAAGTTGAAATTGGAAGAGTTTCTTTTAAAAAGACATGTTTATCTAATGTGACAGTTAACAGTTTTTTTTTTTTTGATAAGAAACAAGTATATTCATATAACAGAAGAGAACAACCTAAGGGCAAGGGACAAGAGGGCCCTCTCCAGGAGAAACTAAAAAATGATGGTCTTCCAATTGTTGAATATCATAGAAAGGCTATAATTATAAAAGTGTTTGGTGTAATTCGTACTCCACCAAGAAGTTGTGTGTTGCAACACAGACCAAAAAGAATCAAAAGAAGTATAGTTATCTTAGTTATCTTAAAAAATTCTACTATTCCTTTCTTTTCAAATGCACTACAAAAGAGACCGGATAAACTACTAGCAATTAGGATTACTTCATTATTCTAATTTGTTGTTTTTGTAGTGTCCTCTACAAGTCAGGAGCACCGAGTGTGGATACTACATCATGATTATGAGAGAAATTGTGACTAGGGAAAGCATTGTCATTTCGAATTCGATATGTTATATATCAAATTATTTCTTTTGTGGGTATAATAATTTTCATGAACATTAATTCATTTATTTTGCATGTGTACAGATTGATACACGAAAATCATACTCACATGTCGAGTTAGGTGATGTGCGGGTTGAGTTAGCTAATTTTTTGGGTTCATACATATGATTGTGACTTATTTGTGATTCTGAAGCATAAATTTTTTTATTGTGGTTGTCATTCTAAAACTTTATGTATATAGATAATATATGTGAATATTTTGAATTGTTCATATGGAGGGAGGAGGGGTTGATTGGTATACTTTTGAGATTAGATTTATTATAGATAGATATACTTTTGGGCTAAGTTAGTTAATTAGAGGATGTTGAGTTGAATTCCTGACAATTTGATGGAATTATTTATATTGGTTTTGTAAATGATATGCAATATTCATATATGTAAAGTTTTGGAAATGATATGGTACAATGTTTTATTTAAATATGTTTGAGTTTTGAAACTATATTTGATGAATATTGTCATTTATATGTATTTATGGAACAATTGCTGAACCATTATACAGGACAATCGGAGCATAATACATGAAGAAAAATATAATTGAATTACAATTTTAAAAAAAATTTGAAAAATGCTTGACAATTTTAAAATGTCATAAACAAGTGCATTCTTGACGATTTTTCAATGTCATAAACAATCACTTTCTTGACGGTTATTAAATGTCATGAAAACTCATACTCTTGACAGTTATTAAATGTCACAAACATACATATCTTTTACAATTTTTGTCATGGATACTCATATTCTTGACGGTTTTAAATTATCATGAACACTTATACTTTTGACGGTTTAAACTGTCATGAAAATTTGTATACTTGACGTTTGTAAAATGTCAACGTTCGTTATTCTTGGAGTTTTTTAAATCGTCAAGAACTTCGACTTTCTTGACACTAGCTTCAATGACAGTTTTAAAACTGTCAAGAATTATAATTCTTGACGGTTTAAAAACATTAAGAGAGTCTATTTTTGTAGTAGTGGAAAGATGACTATAAAACCTTTTACTGGAAAGTGTTATAGAGCCAAAGAGCCCCTTGAACTTATACATTCAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGTGGAGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATATTTAATGGAGCATAAGTTTGAAGCTCTTGAAAAGTTCAAGGAGTATATAAGGCTAAAGTTGAAAATCTATTAAGTAAAAAGATTAAAATACTTTGATCTGATCAAGGTGGAGAGTACATAAATTTGAGATTCTAGGACTATATGATAGAAAATGAAATCCAATCCCAACTCTTAGTAGCTGGTACACCTCAATAAAATGGTGTATCAGAAAGGAGAAATAGAACCCTATTAGACATGGTTTGTTCAATGATGAGCTATGCTTAATTGCGTAGCTCGTTTTAGGGGTTGCGATTGAGACTATAGTTCATATCTTGAACAATGTTTCCTCGAAGAGTATTTCTAAAACACCTTTCGAGTTTTGGAGAGGACGTAATCCTAGTTTAAGTCACTATAGAATCTAGAGTTGTTCAGCACACATATTAGTGACAACTCCTAAGTAGTTGAAACCTTGTTCAAGGTTATGCCAATTTGTTGGTTACCCAAAAGAAATGAGAGGTGGTCTATTCTTCGATCCACAAGAAACTAAAGTGTTTGTATCGATAAATGCTATTTTATTGCAAGAGAACCACATGAGAGATCATAAACCACGAAACAAATTAATATTAAATGAAGCTATTGATGAATCAACATGGATTGTTGATGAAGTTGGTTCGTCGTCAAAAGTTGATGAAACCAACACATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGAATGCCTCAATGCAGTAGGAGAATTGCATTACAACCTAACCGTTACTTGGGTTTAATTGAAACTCAGGTGGTCATACAAGATGATGGCGTTGAGGATTCATTCTCATATAAACAGGCAATGAATGATGTAGACAAGGATTAA

mRNA sequence

TTTCCCTTCACTTTTGTGCATCTCCCCCTCTCGCAAAAGGTAACCCATCGTCGATCTCTTCCATCTTTATCTTCTCCGACTGTCTCGACTTCCATCCCTTTCGTCTTCCATCTTCCACAGTCGTCTGAAGTTCCCCGTGAAATGGCTAGTCATTGCCAAGACAATTCAACAATGGAGCCACACGGTGAATTTCAGTCAAAAATCTTTAGATCTATTTTCTTTTTCCTCACCTGTTCCATTATGAATAGTACCAAATCCGTGTACATTAATGATTTCAATTTACGAACAAACTTTGTTCTTATCCTGAACGACATTGCTGCTAGAATATGTAGAATAGTTTATGGAAATGAAAATTGTACTTCATTCAAGTTACCAACTAATTATGGAGTGGAGTATTTAGAATGGTTAAAGGTGGAATACAATTATATGGTTGTAAGTAAACAACATTCATTTGTTTCTGCCAAGATAATGAAAGAACAGTTTAGATTGTCAAAATTAAATGCTTTCTACATTGTGATGTTTGTGATTTCATGGGGCTTCATGTGGTGGAAACAAGTATATTCATATAACAGAAGAGAACAACCTAAGGGCAAGGGACAAGAGGGCCCTCTCCAGGAGAAACTAAAAAATGATGGTCTTCCAATTGTTGAATATCATAGAAAGGCTATAATTATAAAAGTGTTTGGTGTAATTCGTACTCCACCAAGAAGTTGTGTGTTGCAACACAGACCAAAAAGAATCAAAAGAAGTATATGTCCTCTACAAGTCAGGAGCACCGAGTGTGGATACTACATCATGATTATGAGAGAAATTGTGACTAGGGAAAGCATTATTGATACACGAAAATCATACTCACATGTCGAGTTAGGTGATGTGCGGGTTGATAGTGGAAAGATGACTATAAAACCTTTTACTGGAAAGTGTTATAGAGCCAAAGAGCCCCTTGAACTTATACATTCAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGTGGAGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTTATGCCAATTTGTTGGTTACCCAAAAGAAATGAGAGGTGGTCTATTCTTCGATCCACAAGAAACTAAAGTGTTTGTATCGATAAATGCTATTTTATTGCAAGAGAACCACATGAGAGATCATAAACCACGAAACAAATTAATATTAAATGAAGCTATTGATGAATCAACATGGATTGTTGATGAAGTTGGTTCGTCGTCAAAAGTTGATGAAACCAACACATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGAATGCCTCAATGCAGTAGGAGAATTGCATTACAACCTAACCGTTACTTGGGTTTAATTGAAACTCAGGTGGTCATACAAGATGATGGCGTTGAGGATTCATTCTCATATAAACAGGCAATGAATGATGTAGACAAGGATTAA

Coding sequence (CDS)

ATGGCTAGTCATTGCCAAGACAATTCAACAATGGAGCCACACGGTGAATTTCAGTCAAAAATCTTTAGATCTATTTTCTTTTTCCTCACCTGTTCCATTATGAATAGTACCAAATCCGTGTACATTAATGATTTCAATTTACGAACAAACTTTGTTCTTATCCTGAACGACATTGCTGCTAGAATATGTAGAATAGTTTATGGAAATGAAAATTGTACTTCATTCAAGTTACCAACTAATTATGGAGTGGAGTATTTAGAATGGTTAAAGGTGGAATACAATTATATGGTTGTAAGTAAACAACATTCATTTGTTTCTGCCAAGATAATGAAAGAACAGTTTAGATTGTCAAAATTAAATGCTTTCTACATTGTGATGTTTGTGATTTCATGGGGCTTCATGTGGTGGAAACAAGTATATTCATATAACAGAAGAGAACAACCTAAGGGCAAGGGACAAGAGGGCCCTCTCCAGGAGAAACTAAAAAATGATGGTCTTCCAATTGTTGAATATCATAGAAAGGCTATAATTATAAAAGTGTTTGGTGTAATTCGTACTCCACCAAGAAGTTGTGTGTTGCAACACAGACCAAAAAGAATCAAAAGAAGTATATGTCCTCTACAAGTCAGGAGCACCGAGTGTGGATACTACATCATGATTATGAGAGAAATTGTGACTAGGGAAAGCATTATTGATACACGAAAATCATACTCACATGTCGAGTTAGGTGATGTGCGGGTTGATAGTGGAAAGATGACTATAAAACCTTTTACTGGAAAGTGTTATAGAGCCAAAGAGCCCCTTGAACTTATACATTCAGACCTCTGTGGTCCAATGAATGTAAAAGCTAGTGGAGGTTTTGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTTATGCCAATTTGTTGGTTACCCAAAAGAAATGAGAGGTGGTCTATTCTTCGATCCACAAGAAACTAAAGTGTTTGTATCGATAAATGCTATTTTATTGCAAGAGAACCACATGAGAGATCATAAACCACGAAACAAATTAATATTAAATGAAGCTATTGATGAATCAACATGGATTGTTGATGAAGTTGGTTCGTCGTCAAAAGTTGATGAAACCAACACATCAGGTCAGTCTCATCCTTCTCAATCGTTGAGAATGCCTCAATGCAGTAGGAGAATTGCATTACAACCTAACCGTTACTTGGGTTTAATTGAAACTCAGGTGGTCATACAAGATGATGGCGTTGAGGATTCATTCTCATATAAACAGGCAATGAATGATGTAGACAAGGATTAA

Protein sequence

MASHCQDNSTMEPHGEFQSKIFRSIFFFLTCSIMNSTKSVYINDFNLRTNFVLILNDIAARICRIVYGNENCTSFKLPTNYGVEYLEWLKVEYNYMVVSKQHSFVSAKIMKEQFRLSKLNAFYIVMFVISWGFMWWKQVYSYNRREQPKGKGQEGPLQEKLKNDGLPIVEYHRKAIIIKVFGVIRTPPRSCVLQHRPKRIKRSICPLQVRSTECGYYIMIMREIVTRESIIDTRKSYSHVELGDVRVDSGKMTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSRLCQFVGYPKEMRGGLFFDPQETKVFVSINAILLQENHMRDHKPRNKLILNEAIDESTWIVDEVGSSSKVDETNTSGQSHPSQSLRMPQCSRRIALQPNRYLGLIETQVVIQDDGVEDSFSYKQAMNDVDKD

Homology

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BLAST of MELO3C029549.2 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-42
Identity = 121/339 (35.69%), Postives = 145/339 (42.77%), Query Frame = 0


Query: 250 GKMTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSR---------- 309
           GKMT + FTGK  RAK PLEL+HSDLCGPMNVKA GG+EYFISFIDD+SR          
Sbjct: 483 GKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHK 542

Query: 310 ------------------------------------------------------------ 369
                                                                       
Sbjct: 543 SESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQN 602

Query: 370 ------------------------------------------------------------ 429
                                                                       
Sbjct: 603 GVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKS 662

Query: 430 ---------------------------LCQFVGYPKEMRGGLFFDPQETKVFVSINAILL 431
                                      LC FVGYPKE RGGLF+ PQE KVFVS NA  L
Sbjct: 663 SLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYPKESRGGLFYHPQENKVFVSTNATFL 722

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BLAST of MELO3C029549.2 vs. NCBI nr
Match: AMY96445.1 (gag/pol protein [Momordica dioica])

HSP 1 Score: 114.8 bits (286), Expect = 7.4e-22
Identity = 95/345 (27.54%), Postives = 126/345 (36.52%), Query Frame = 0


Query: 250 GKMTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSRL--------- 309
           GKMT +PFTGK  RA + LELIH+D+CGPM+VKA GG++YF+SF DD SR          
Sbjct: 490 GKMTKRPFTGKGLRASDLLELIHTDVCGPMSVKARGGYQYFLSFTDDLSRYGYVYLLKHK 549

Query: 310 ------------------------------------------------------------ 369
                                                                       
Sbjct: 550 SESFEKFKEFQAEVENEIGKKIKTLRSDRGGEYMSSEFGDHLREFGIVSQLSAPGTPQCN 609

Query: 370 ------------------------------------------------------------ 429
                                                                       
Sbjct: 610 GVSERRNRTLLDMVRSMMSYADLPDSFWGYARERERAILNRVPSKSVEETPYELWYGRKS 669

Query: 430 ----------------------------CQFVGYPKEMRGGLFFDPQETKVFVSINAILL 431
                                       C FVGYPKE RG  F+ PQE KVFV+ N   L
Sbjct: 670 SLSFLKIWGCPAHVKKLQPKKLEPRSEKCLFVGYPKETRGYYFYHPQENKVFVATNEAFL 729

[Close]

BLAST of MELO3C029549.2 vs. NCBI nr
Match: XP_024018875.1 (uncharacterized protein LOC112090852 [Morus notabilis])

HSP 1 Score: 105.9 bits (263), Expect = 3.4e-19
Identity = 68/221 (30.77%), Postives = 105/221 (47.51%), Query Frame = 0


Query: 252 MTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSR------------ 311
           MT +PF  K  R KE LEL+HSD+  PMN+K  GG+EY+++ IDDYSR            
Sbjct: 1   MTKRPFGYKGNRVKEVLELVHSDVYSPMNIKERGGYEYYVTIIDDYSRYGYVYPMHHKSE 60

Query: 312 --------------------------------LCQFVGYPKEMRGGLFFDPQETKVFVSI 371
                                           +  FVGYP+  + G F++P+E  V VS+
Sbjct: 61  TFEKFREFRAEVKKQLAHVLDKEVNKLEASSEVYIFVGYPRGTKMGYFYNPKENIVMVSM 120

Query: 372 NAILLQENHMRDHKPRNKLILNEAIDESTWIVDEVGSSSKVDETNTSGQSHPSQSLRMPQ 429
           NA  L E++M D  P +K++L+E +       D V  +  ++      +    Q  +  Q
Sbjct: 121 NATFLDESYMNDFMPCSKVVLDEMLS------DLVILTVPLETNRIRVEKKTQQQPKGLQ 180

[Close]

BLAST of MELO3C029549.2 vs. NCBI nr
Match: EXC18499.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis])

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-19
Identity = 84/307 (27.36%), Postives = 117/307 (38.11%), Query Frame = 0


Query: 252 MTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSR-----LCQ---- 311
           MT  PFT K  RA EPL+LIHSD+CG +NV+  G +EY+ +FIDDYSR     L Q    
Sbjct: 1   MTKMPFTAKGVRATEPLQLIHSDVCGLLNVQVRGAYEYYATFIDDYSRYGYVYLMQRKSE 60

Query: 312 ------------------------------------------------------------ 371
                                                                       
Sbjct: 61  TFGKFREFRAEVEKQLGKPIKTPRSDREGEYMDQEFRDFLIEEGVVSQLTAPGTPQQNGV 120

Query: 372 ------------------------------------------------------FVGYPK 431
                                                                 FVGYP+
Sbjct: 121 AERRNRTLLDMIRSMLSYSSLPTSFWGHALKTAIPAHVLRQKTGKLEPRSEVYIFVGYPQ 180

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BLAST of MELO3C029549.2 vs. NCBI nr
Match: XP_024043326.1 (uncharacterized protein LOC112099998 [Citrus clementina])

HSP 1 Score: 95.5 bits (236), Expect = 4.6e-16
Identity = 57/177 (32.20%), Postives = 82/177 (46.33%), Query Frame = 0


Query: 252 MTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFE---YFISFI-------------- 311
           MT +PF+ K  RA  PLEL+H+D+CGP+NV+A G  E   Y ++ +              
Sbjct: 1   MTKRPFSAKGVRATVPLELVHTDVCGPINVQARGALETAVYLLNLVPSKSVPKTPIELWS 60

Query: 312 --------------------------DDYSRLCQFVGYPKEMRGGLFFDPQETKVFVSIN 371
                                     D  S +C FVGYPK  RGGLF+ PQ+ KV VS +
Sbjct: 61  GRKPSLRHVRIWGSPAHVLKPKADKMDSRSEVCMFVGYPKGTRGGLFYSPQDRKVIVSTH 120

Query: 372 AILLQENHMRDHKPRNKLILNEAIDESTWIVDEVGSSSKVDETNTSGQSHPSQSLRM 386
              L+E++M + KP++K+IL E         D+V +   +  T    Q  P    R+
Sbjct: 121 FTSLEEDYMNNFKPKSKVILEELSG------DQVDTQLSMPVTEQEEQQQPDDQRRI 171

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BLAST of MELO3C029549.2 vs. Swiss-Prot
Match: sp|P10978|POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.5e-05
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 250 GKMTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSR 300
           GK     F     R    L+L++SD+CGPM +++ GG +YF++FIDD SR
Sbjct: 463 GKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASR 512

[Close]

BLAST of MELO3C029549.2 vs. TrEMBL
Match: tr|E2GK51|E2GK51_BRYDI (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.1e-42
Identity = 121/339 (35.69%), Postives = 145/339 (42.77%), Query Frame = 0


Query: 250 GKMTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSR---------- 309
           GKMT + FTGK  RAK PLEL+HSDLCGPMNVKA GG+EYFISFIDD+SR          
Sbjct: 483 GKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYFISFIDDFSRYGHVYLLHHK 542

Query: 310 ------------------------------------------------------------ 369
                                                                       
Sbjct: 543 SESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDYLIEFGIQSQLSAPSTPQQN 602

Query: 370 ------------------------------------------------------------ 429
                                                                       
Sbjct: 603 GVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAIHILNNVPSKSVLETPYELWKGRKS 662

Query: 430 ---------------------------LCQFVGYPKEMRGGLFFDPQETKVFVSINAILL 431
                                      LC FVGYPKE RGGLF+ PQE KVFVS NA  L
Sbjct: 663 SLRYFRIWGCPAHVLVQNPKKLEPRSKLCLFVGYPKESRGGLFYHPQENKVFVSTNATFL 722

[Close]

BLAST of MELO3C029549.2 vs. TrEMBL
Match: tr|A0A165U314|A0A165U314_9ROSI (Gag/pol protein OS=Momordica dioica OX=654836 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.9e-22
Identity = 95/345 (27.54%), Postives = 126/345 (36.52%), Query Frame = 0


Query: 250 GKMTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSRL--------- 309
           GKMT +PFTGK  RA + LELIH+D+CGPM+VKA GG++YF+SF DD SR          
Sbjct: 490 GKMTKRPFTGKGLRASDLLELIHTDVCGPMSVKARGGYQYFLSFTDDLSRYGYVYLLKHK 549

Query: 310 ------------------------------------------------------------ 369
                                                                       
Sbjct: 550 SESFEKFKEFQAEVENEIGKKIKTLRSDRGGEYMSSEFGDHLREFGIVSQLSAPGTPQCN 609

Query: 370 ------------------------------------------------------------ 429
                                                                       
Sbjct: 610 GVSERRNRTLLDMVRSMMSYADLPDSFWGYARERERAILNRVPSKSVEETPYELWYGRKS 669

Query: 430 ----------------------------CQFVGYPKEMRGGLFFDPQETKVFVSINAILL 431
                                       C FVGYPKE RG  F+ PQE KVFV+ N   L
Sbjct: 670 SLSFLKIWGCPAHVKKLQPKKLEPRSEKCLFVGYPKETRGYYFYHPQENKVFVATNEAFL 729

[Close]

BLAST of MELO3C029549.2 vs. TrEMBL
Match: tr|A0A2N9H4W1|A0A2N9H4W1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37398 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-21
Identity = 75/226 (33.19%), Postives = 105/226 (46.46%), Query Frame = 0


Query: 250 GKMTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSRL--------- 309
           GKMT  PFT K  RA + LELIH+D+CGP+   A GGF YFI+FIDD+SR+         
Sbjct: 253 GKMTKNPFTRKGVRATDVLELIHTDVCGPLTHMARGGFFYFITFIDDHSRVPTKSVPNTP 312

Query: 310 -------------------------------------CQFVGYPKEMRGGLFFDPQETKV 369
                                                C FVGYPK      F++P E K 
Sbjct: 313 YELWTSKKPSLNHIKIWGCPSHVRKSNVDKLGPRSDRCLFVGYPKMSTRFYFYNPSEQKF 372

Query: 370 FVSINAILLQENHMRDHKPRNKLILNEAIDESTWIVDEVGSSSKVDETNTSGQSHPSQSL 429
           FVS+NAI L+E++   ++ R K+ L E  D    +  E      +  T  S    P +S+
Sbjct: 373 FVSMNAIFLEEDYSL-NESRTKVTLKEQNDRPMTVPSENNEEQVIVPTEPSNMQDPRRSI 432

[Close]

BLAST of MELO3C029549.2 vs. TrEMBL
Match: tr|W9RZ97|W9RZ97_9ROSA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis OX=981085 GN=L484_018680 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-19
Identity = 84/307 (27.36%), Postives = 117/307 (38.11%), Query Frame = 0


Query: 252 MTIKPFTGKCYRAKEPLELIHSDLCGPMNVKASGGFEYFISFIDDYSR-----LCQ---- 311
           MT  PFT K  RA EPL+LIHSD+CG +NV+  G +EY+ +FIDDYSR     L Q    
Sbjct: 1   MTKMPFTAKGVRATEPLQLIHSDVCGLLNVQVRGAYEYYATFIDDYSRYGYVYLMQRKSE 60

Query: 312 ------------------------------------------------------------ 371
                                                                       
Sbjct: 61  TFGKFREFRAEVEKQLGKPIKTPRSDREGEYMDQEFRDFLIEEGVVSQLTAPGTPQQNGV 120

Query: 372 ------------------------------------------------------FVGYPK 431
                                                                 FVGYP+
Sbjct: 121 AERRNRTLLDMIRSMLSYSSLPTSFWGHALKTAIPAHVLRQKTGKLEPRSEVYIFVGYPQ 180

[Close]

BLAST of MELO3C029549.2 vs. TrEMBL
Match: tr|W9QNG0|W9QNG0_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007870 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-16
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 298 SRLCQFVGYPKEMRGGLFFDPQETKVFVSINAILLQENHMRDHKPRNKLILNEAIDESTW 357
           S LC FVGYP+  RG LF+   + KV+VS NA  L+ ++M D KPR+K++L E +     
Sbjct: 2   SELCIFVGYPQGTRGRLFYSQADQKVYVSTNATFLEHDYMIDFKPRSKIVLEELLS---- 61

Query: 358 IVDEVG-SSSKVDETNTSGQSHPSQSLRMPQCSRRIALQPNRYLGLIETQVVIQDDGVED 417
             DE+G   ++V        + P Q+ + P  S R+++ P+RY G  E Q+V  DDG ED
Sbjct: 62  --DEIGPHPTRVVGPLREKTTVPDQTPKAPHRSGRVSMLPDRYTG--EAQIVTTDDGKED 121

Query: 418 SFSYKQAMNDVDKD 431
             ++K AM+D DK+
Sbjct: 122 PSTFKDAMDDSDKE 127

The following BLAST results are available for this feature:

BLAST of MELO3C029549.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	1.7e-42	35.69	gag/pol protein, partial [Bryonia dioica]	[more]
AMY96445.1	7.4e-22	27.54	gag/pol protein [Momordica dioica]	[more]
XP_024018875.1	3.4e-19	30.77	uncharacterized protein LOC112090852 [Morus notabilis]	[more]
EXC18499.1	4.5e-19	27.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus notabilis]	[more]
XP_024043326.1	4.6e-16	32.20	uncharacterized protein LOC112099998 [Citrus clementina]	[more]

BLAST of MELO3C029549.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029549.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P10978\|POLX_TOBAC	1.5e-05	44.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of MELO3C029549.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E2GK51\|E2GK51_BRYDI	1.1e-42	35.69	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
tr\|A0A165U314\|A0A165U314_9ROSI	4.9e-22	27.54	Gag/pol protein OS=Momordica dioica OX=654836 PE=4 SV=1	[more]
tr\|A0A2N9H4W1\|A0A2N9H4W1_FAGSY	2.4e-21	33.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37398 PE=4 SV=1	[more]
tr\|W9RZ97\|W9RZ97_9ROSA	3.0e-19	27.36	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Morus notabilis O...	[more]
tr\|W9QNG0\|W9QNG0_9ROSA	4.0e-16	40.30	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_007870 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029549.2.1	MELO3C029549.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 364..385
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 261..307

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029549.2	Silver-seed gourd	carmedB0884
MELO3C029549.2	Silver-seed gourd	carmedB0953
MELO3C029549.2	Cucumber (Chinese Long) v3	cucmedB039
MELO3C029549.2	Watermelon (97103) v2	medwmbB235
MELO3C029549.2	Wax gourd	medwgoB305
MELO3C029549.2	Cucumber (Gy14) v2	cgybmedB032
MELO3C029549.2	Cucumber (Gy14) v1	cgymedB576
MELO3C029549.2	Cucurbita maxima (Rimu)	cmamedB069
MELO3C029549.2	Cucurbita maxima (Rimu)	cmamedB111
MELO3C029549.2	Cucurbita moschata (Rifu)	cmomedB061
MELO3C029549.2	Cucurbita moschata (Rifu)	cmomedB104
MELO3C029549.2	Cucurbita pepo (Zucchini)	cpemedB387
MELO3C029549.2	Cucurbita pepo (Zucchini)	cpemedB733
MELO3C029549.2	Wild cucumber (PI 183967)	cpimedB036
MELO3C029549.2	Cucumber (Chinese Long) v2	cumedB033
MELO3C029549.2	Bottle gourd (USVL1VR-Ls)	lsimedB418
MELO3C029549.2	Watermelon (Charleston Gray)	medwcgB237
MELO3C029549.2	Watermelon (97103) v1	medwmB264