MELO3C029501.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029501.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Homogentisate phytyltransferase 2
Location	chr02 : 21469863 .. 21470561 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGTTAGCTATCCTGCAGTTATGGTAGCCTCTATAGTTTGAAGTTAGTTATAGAAAAATAGTGAAAATTCAGGGGAGTAAGTTATGGATGTGAGAGAGTGAGAGACATATGTTTGTAATCAAACCTATTTATGTTTTAGGGACTTAAACGATGGATAAGGGTTGGATGAAACTTAGAAATAAGTTATCCCTTGAGTATAGACATGGAGTGACCCAATTTTTAGAATTTTCCAAATTTCACGTTGATGCTTATGGACGATTAAGGTGTCCATGCAAGAGATGTTTGAATTTAAAAATTGGAGCTCATTAGAGGGTGTGGAACGACATCTGCTGATTATTGGAATATCCCCCTACTACACATAATGGGTGTATCATGGAGAGTCATTAAGCTATAGAGGTACAGAAAACTTTGAGGAAGGAACTAGTAGTAATCCTTTTAATGAAGGAACTAGTAGTACACAATTTAATGAAGAAGGTGATATCTTTGGTATGCTAAATGATCATTTACAAGCCCCTATTGAACATGAAGAGGAAATAGAGGAATTTCATTTGGAAGATGAAATGCCGATGAATGTTGGGGTAAATATAGATGAAGATACAACAAATAATATATTTCAGGACTTATTGAATCAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTTA

mRNA sequence

GTTGTGTTAGCTATCCTGCAGTTATGGGACTTAAACGATGGATAAGGGTTGGATGAAACTTAGAAATAAGTTATCCCTTGAGTATAGACATGGAGTGACCCAATTTTTAGAATTTTCCAAATTTCACGTTGATGCTTATGGACGATTAAGGTGTCCATGCAAGAGATGTTTGAATTTAAAAATTGGAGCTCATTAGAGGGTGTGGAACGACATCTGCTGATTATTGGAATATCCCCCTACTACACATAATGGGTGTATCATGGAGAGTCATTAAGCTATAGAGGTACAGAAAACTTTGAGGAAGGAACTAGTAGTAATCCTTTTAATGAAGGAACTAGTAGTACACAATTTAATGAAGAAGGTGATATCTTTGGTATGCTAAATGATCATTTACAAGCCCCTATTGAACATGAAGAGGAAATAGAGGAATTTCATTTGGAAGATGAAATGCCGATGAATGTTGGGGTAAATATAGATGAAGATACAACAAATAATATATTTCAGGACTTATTGAATCAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTTA

Coding sequence (CDS)

ATGCTAAATGATCATTTACAAGCCCCTATTGAACATGAAGAGGAAATAGAGGAATTTCATTTGGAAGATGAAATGCCGATGAATGTTGGGGTAAATATAGATGAAGATACAACAAATAATATATTTCAGGACTTATTGAATCAAGCACGTAATGAGTTGTACCCCGGTTGTTCTGAATTTTCGTCGTTGAATTTTTTGGTTAAGTTT

Protein sequence

MLNDHLQAPIEHEEEIEEFHLEDEMPMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSEFSSLNFLVKF

Homology

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BLAST of MELO3C029501.2 vs. NCBI nr
Match: XP_008455800.1 (PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-06
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MLNDHLQAPIEHEEEIEEFH-LEDEMPMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSE 60
           +L D   + I  EE  ++    +DE+P +V    DE  T+N+F++L+N+ARN LYPGC++
Sbjct: 93  LLTDLQGSMIAREENFDDGDGFDDEVPEDV----DEINTSNVFEELMNEARNPLYPGCTK 152

Query: 61  FSSLNFLVK 69
           FSSLNFLVK
Sbjct: 153 FSSLNFLVK 157

[Close]

BLAST of MELO3C029501.2 vs. TrEMBL
Match: tr|A0A1S3C1V3|A0A1S3C1V3_CUCME (uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 33/69 (47.83%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 1   MLNDHLQAPIEHEEEIEEFH-LEDEMPMNVGVNIDEDTTNNIFQDLLNQARNELYPGCSE 60
           +L D   + I  EE  ++    +DE+P +V    DE  T+N+F++L+N+ARN LYPGC++
Sbjct: 93  LLTDLQGSMIAREENFDDGDGFDDEVPEDV----DEINTSNVFEELMNEARNPLYPGCTK 152

Query: 61  FSSLNFLVK 69
           FSSLNFLVK
Sbjct: 153 FSSLNFLVK 157

The following BLAST results are available for this feature:

BLAST of MELO3C029501.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455800.1	2.7e-06	47.83	PREDICTED: uncharacterized protein LOC103495895 [Cucumis melo]	[more]

BLAST of MELO3C029501.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029501.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029501.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C1V3\|A0A1S3C1V3_CUCME	1.8e-06	47.83	uncharacterized protein LOC103495895 OS=Cucumis melo OX=3656 GN=LOC103495895 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029501.2.1	MELO3C029501.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029501.2	Wax gourd	medwgoB313
MELO3C029501.2	Cucumber (Gy14) v2	cgybmedB338
MELO3C029501.2	Cucurbita maxima (Rimu)	cmamedB063
MELO3C029501.2	Cucurbita maxima (Rimu)	cmamedB120
MELO3C029501.2	Cucurbita moschata (Rifu)	cmomedB055
MELO3C029501.2	Cucurbita moschata (Rifu)	cmomedB108
MELO3C029501.2	Cucurbita pepo (Zucchini)	cpemedB395
MELO3C029501.2	Cucurbita pepo (Zucchini)	cpemedB737
MELO3C029501.2	Bottle gourd (USVL1VR-Ls)	lsimedB427
MELO3C029501.2	Watermelon (Charleston Gray)	medwcgB248
MELO3C029501.2	Watermelon (97103) v1	medwmB285
MELO3C029501.2	Silver-seed gourd	carmedB0038
MELO3C029501.2	Silver-seed gourd	carmedB0136
MELO3C029501.2	Watermelon (97103) v2	medwmbB249