MELO3C029449.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029449.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr02 : 16427236 .. 16427438 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGCCATTCGATGGTGTGGTACGAAGTGGGTTTAGTACACCCTGCCAAAACGGGTCCTCACTATAGTGAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTAGGGATGATGTCAAGTCTGCATGGCCTTATGGGCTGGGTCAAACACGTACTACAATGGCAATGAAAATGGGAAGTAAGGCT

mRNA sequence

CAAGCCATTCGATGGTGTGGTACGAAGTGGGTTTAGTACACCCTGCCAAAACGGGTCCTCACTATAGTGAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTAGGGATGATGTCAAGTCTGCATGGCCTTATGGGCTGGGTCAAACACGTACTACAATGGCAATGAAAATGGGAAGTAAGGCT

Coding sequence (CDS)

ATGGTGTGGTACGAAGTGGGTTTAGTACACCCTGCCAAAACGGGTCCTCACTATAGTGAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTAGGGATGATGTCAAGTCTGCATGGCCTTATGGGCTGGGTCAAACACGTACTACAATGGCAATGAAAATGGGAAGTAAGGCT

Protein sequence

MVWYEVGLVHPAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLGQTRTTMAMKMGSKA

Homology

[Close]

BLAST of MELO3C029449.2 vs. NCBI nr
Match: PLY62414.1 (hypothetical protein LSAT_5X16680 [Lactuca sativa])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 1   MVWYEVGLVHPAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLG 51
           +VWY VGLV PAKT P  ++RCVPHSR TAS+ILEEG DDVKSAWP   G
Sbjct: 57  VVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAG 106

[Close]

BLAST of MELO3C029449.2 vs. NCBI nr
Match: PLY81935.1 (hypothetical protein LSAT_5X16200 [Lactuca sativa])

HSP 1 Score: 80.5 bits (197), Expect = 2.3e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 1   MVWYEVGLVHPAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLG 51
           +VWY VGLV PAKT P  ++RCVPHSR TAS+ILEEG DDVKSAWP   G
Sbjct: 53  VVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAG 102

[Close]

BLAST of MELO3C029449.2 vs. NCBI nr
Match: OAY74169.1 (hypothetical protein ACMD2_19638 [Ananas comosus])

HSP 1 Score: 68.9 bits (167), Expect = 6.9e-09
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVWYEVGLVH-PAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLGQTRTTM 57
           +VWY V +V  PA   P   +RCVPHSRGTASEILEEG DDVKSAWP  LG    TM
Sbjct: 49  VVWYVVVIVRGPA---PKQRKRCVPHSRGTASEILEEGGDDVKSAWPLWLGTHVLTM 102

[Close]

BLAST of MELO3C029449.2 vs. NCBI nr
Match: RDY14779.1 (hypothetical protein CR513_00079, partial [Mucuna pruriens])

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-07
Identity = 28/42 (66.67%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 9   VHPAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLG 51
           V PAKT P  ++RC+PHSRGT S+I EEG DDVKSAWP   G
Sbjct: 67  VRPAKTAPKQTKRCMPHSRGTTSDIQEEGGDDVKSAWPLWAG 108

[Close]

BLAST of MELO3C029449.2 vs. NCBI nr
Match: PPR89028.1 (hypothetical protein GOBAR_AA31648 [Gossypium barbadense])

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 13  KTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLG 51
           KT P  ++RCVPHSRGTAS+ILEEG DDVKSAWP   G
Sbjct: 186 KTAPKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAG 223

[Close]

BLAST of MELO3C029449.2 vs. TrEMBL
Match: tr|A0A2J6L3N0|A0A2J6L3N0_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 1   MVWYEVGLVHPAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLG 51
           +VWY VGLV PAKT P  ++RCVPHSR TAS+ILEEG DDVKSAWP   G
Sbjct: 53  VVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAG 102

[Close]

BLAST of MELO3C029449.2 vs. TrEMBL
Match: tr|A0A2J6JHW2|A0A2J6JHW2_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 1   MVWYEVGLVHPAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLG 51
           +VWY VGLV PAKT P  ++RCVPHSR TAS+ILEEG DDVKSAWP   G
Sbjct: 57  VVWYVVGLVRPAKTAPKQTKRCVPHSRRTASDILEEGGDDVKSAWPLWAG 106

[Close]

BLAST of MELO3C029449.2 vs. TrEMBL
Match: tr|A0A199VAR2|A0A199VAR2_ANACO (Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_19638 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-09
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MVWYEVGLVH-PAKTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLGQTRTTM 57
           +VWY V +V  PA   P   +RCVPHSRGTASEILEEG DDVKSAWP  LG    TM
Sbjct: 49  VVWYVVVIVRGPA---PKQRKRCVPHSRGTASEILEEGGDDVKSAWPLWLGTHVLTM 102

[Close]

BLAST of MELO3C029449.2 vs. TrEMBL
Match: tr|A0A2P5WD68|A0A2P5WD68_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31648 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 0


Query: 13  KTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLG 51
           KT P  ++RCVPHSRGTAS+ILEEG DDVKSAWP   G
Sbjct: 186 KTAPKQTKRCVPHSRGTASDILEEGGDDVKSAWPLWAG 223

[Close]

BLAST of MELO3C029449.2 vs. TrEMBL
Match: tr|A0A2I0BD14|A0A2I0BD14_9ASPA (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash013094 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.6e-07
Identity = 27/39 (69.23%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 13 KTGPHYSERCVPHSRGTASEILEEGRDDVKSAWPYGLGQ 52
          +  P   +RCVPHSRGTASEILEEG DDVKSAWP   G+
Sbjct: 41 RPAPKQRKRCVPHSRGTASEILEEGGDDVKSAWPLWAGR 79

The following BLAST results are available for this feature:

BLAST of MELO3C029449.2 vs. NCBI nr


Match Name	E-value	Identity	Description
PLY62414.1	2.3e-12	72.00	hypothetical protein LSAT_5X16680 [Lactuca sativa]	[more]
PLY81935.1	2.3e-12	72.00	hypothetical protein LSAT_5X16200 [Lactuca sativa]	[more]
OAY74169.1	6.9e-09	64.91	hypothetical protein ACMD2_19638 [Ananas comosus]	[more]
RDY14779.1	1.3e-07	66.67	hypothetical protein CR513_00079, partial [Mucuna pruriens]	[more]
PPR89028.1	2.2e-07	73.68	hypothetical protein GOBAR_AA31648 [Gossypium barbadense]	[more]

BLAST of MELO3C029449.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029449.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029449.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2J6L3N0\|A0A2J6L3N0_LACSA	1.5e-12	72.00	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X16200 PE=4 SV=1	[more]
tr\|A0A2J6JHW2\|A0A2J6JHW2_LACSA	1.5e-12	72.00	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X16680 PE=4 SV=1	[more]
tr\|A0A199VAR2\|A0A199VAR2_ANACO	4.6e-09	64.91	Uncharacterized protein OS=Ananas comosus OX=4615 GN=ACMD2_19638 PE=4 SV=1	[more]
tr\|A0A2P5WD68\|A0A2P5WD68_GOSBA	1.5e-07	73.68	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA31648 PE=4 SV...	[more]
tr\|A0A2I0BD14\|A0A2I0BD14_9ASPA	9.6e-07	69.23	Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash013094 P...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029449.2.1	MELO3C029449.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029449.2	Cucumber (Gy14) v2	cgybmedB045
MELO3C029449.2	Cucurbita maxima (Rimu)	cmamedB023
MELO3C029449.2	Cucurbita maxima (Rimu)	cmamedB060
MELO3C029449.2	Cucurbita maxima (Rimu)	cmamedB112
MELO3C029449.2	Cucurbita maxima (Rimu)	cmamedB469
MELO3C029449.2	Cucurbita moschata (Rifu)	cmomedB011
MELO3C029449.2	Cucurbita moschata (Rifu)	cmomedB052
MELO3C029449.2	Cucurbita moschata (Rifu)	cmomedB105
MELO3C029449.2	Cucurbita pepo (Zucchini)	cpemedB392
MELO3C029449.2	Cucurbita pepo (Zucchini)	cpemedB604
MELO3C029449.2	Cucurbita pepo (Zucchini)	cpemedB734
MELO3C029449.2	Cucurbita pepo (Zucchini)	cpemedB851
MELO3C029449.2	Wild cucumber (PI 183967)	cpimedB042
MELO3C029449.2	Cucumber (Chinese Long) v2	cumedB038
MELO3C029449.2	Bottle gourd (USVL1VR-Ls)	lsimedB309
MELO3C029449.2	Bottle gourd (USVL1VR-Ls)	lsimedB425
MELO3C029449.2	Watermelon (Charleston Gray)	medwcgB242
MELO3C029449.2	Watermelon (Charleston Gray)	medwcgB249
MELO3C029449.2	Watermelon (97103) v1	medwmB268
MELO3C029449.2	Watermelon (97103) v1	medwmB288
MELO3C029449.2	Silver-seed gourd	carmedB0135
MELO3C029449.2	Silver-seed gourd	carmedB0636
MELO3C029449.2	Silver-seed gourd	carmedB0675
MELO3C029449.2	Cucumber (Chinese Long) v3	cucmedB052
MELO3C029449.2	Watermelon (97103) v2	medwmbB242
MELO3C029449.2	Watermelon (97103) v2	medwmbB251
MELO3C029449.2	Wax gourd	medwgoB290